Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS11415 and ABZR87_RS11420 are separated by 7 nucleotides ABZR87_RS11420 and ABZR87_RS11425 are separated by 40 nucleotides ABZR87_RS11425 and ABZR87_RS11430 are separated by 126 nucleotides
ABZR87_RS11410: ABZR87_RS11410 - formyltransferase, at 2,418,441 to 2,419,382
_RS11410
ABZR87_RS11415: ABZR87_RS11415 - glycosyltransferase, at 2,419,379 to 2,420,374
_RS11415
ABZR87_RS11420: ABZR87_RS11420 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 2,420,382 to 2,421,542
_RS11420
ABZR87_RS11425: ABZR87_RS11425 - SMR family transporter, at 2,421,583 to 2,421,954
_RS11425
ABZR87_RS11430: ABZR87_RS11430 - glycosyltransferase family 39 protein, at 2,422,081 to 2,423,751
_RS11430
Position (kb)
2420
2421
2422 Strain fitness (log2 ratio)
-2
-1
0
1 at 2420.376 kb on - strand at 2420.384 kb on - strand at 2420.384 kb on - strand at 2420.384 kb on - strand at 2420.390 kb on - strand at 2420.670 kb on - strand, within ABZR87_RS11420 at 2420.670 kb on - strand, within ABZR87_RS11420 at 2420.676 kb on - strand, within ABZR87_RS11420 at 2421.098 kb on - strand, within ABZR87_RS11420 at 2421.098 kb on - strand, within ABZR87_RS11420 at 2421.098 kb on - strand, within ABZR87_RS11420 at 2421.386 kb on - strand, within ABZR87_RS11420 at 2421.386 kb on - strand, within ABZR87_RS11420 at 2421.996 kb on - strand at 2422.082 kb on + strand at 2422.082 kb on + strand at 2422.083 kb on + strand at 2422.083 kb on - strand at 2422.083 kb on - strand at 2422.083 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 2,420,376 - -0.4 2,420,384 - +0.1 2,420,384 - -0.9 2,420,384 - -0.4 2,420,390 - +0.5 2,420,670 - ABZR87_RS11420 0.25 -0.7 2,420,670 - ABZR87_RS11420 0.25 +0.0 2,420,676 - ABZR87_RS11420 0.25 -1.4 2,421,098 - ABZR87_RS11420 0.62 +0.0 2,421,098 - ABZR87_RS11420 0.62 -1.9 2,421,098 - ABZR87_RS11420 0.62 -1.7 2,421,386 - ABZR87_RS11420 0.86 +0.6 2,421,386 - ABZR87_RS11420 0.86 -1.4 2,421,996 - -0.1 2,422,082 + +0.0 2,422,082 + -0.4 2,422,083 + +0.0 2,422,083 - -0.2 2,422,083 - +0.0 2,422,083 - +0.2
Or see this region's nucleotide sequence