Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09170 and ABZR87_RS09175 are separated by 81 nucleotides ABZR87_RS09175 and ABZR87_RS09180 are separated by 12 nucleotides ABZR87_RS09180 and ABZR87_RS09185 are separated by 97 nucleotides ABZR87_RS09185 and ABZR87_RS09190 are separated by 81 nucleotides
ABZR87_RS09170: ABZR87_RS09170 - AsmA family protein, at 1,940,504 to 1,942,801
_RS09170
ABZR87_RS09175: ABZR87_RS09175 - tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA, at 1,942,883 to 1,943,785
_RS09175
ABZR87_RS09180: ABZR87_RS09180 - thioredoxin domain-containing protein, at 1,943,798 to 1,944,121
_RS09180
ABZR87_RS09185: ABZR87_RS09185 - bacteriohemerythrin, at 1,944,219 to 1,944,635
_RS09185
ABZR87_RS09190: ABZR87_RS09190 - DsbA family protein, at 1,944,717 to 1,945,382
_RS09190
Position (kb) 1942
1943
1944 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1941.887 kb on + strand, within ABZR87_RS09170 at 1942.062 kb on + strand, within ABZR87_RS09170 at 1942.062 kb on + strand, within ABZR87_RS09170 at 1942.062 kb on + strand, within ABZR87_RS09170 at 1942.062 kb on + strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.063 kb on - strand, within ABZR87_RS09170 at 1942.093 kb on - strand, within ABZR87_RS09170 at 1942.093 kb on - strand, within ABZR87_RS09170 at 1942.218 kb on + strand, within ABZR87_RS09170 at 1942.219 kb on - strand, within ABZR87_RS09170 at 1942.219 kb on - strand, within ABZR87_RS09170 at 1942.219 kb on - strand, within ABZR87_RS09170 at 1942.219 kb on - strand, within ABZR87_RS09170 at 1942.319 kb on + strand, within ABZR87_RS09170 at 1942.320 kb on - strand, within ABZR87_RS09170 at 1942.587 kb on + strand at 1942.587 kb on + strand at 1942.587 kb on + strand at 1942.587 kb on + strand at 1942.587 kb on + strand at 1942.588 kb on - strand at 1942.588 kb on - strand at 1942.588 kb on - strand at 1942.588 kb on - strand at 1942.692 kb on + strand at 1942.692 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.795 kb on + strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.796 kb on - strand at 1942.817 kb on - strand at 1942.817 kb on - strand at 1942.819 kb on - strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.848 kb on + strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.849 kb on - strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.850 kb on + strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.851 kb on - strand at 1942.852 kb on + strand at 1942.852 kb on + strand at 1942.852 kb on + strand at 1942.852 kb on + strand at 1942.852 kb on + strand at 1942.853 kb on - strand at 1942.853 kb on - strand at 1942.853 kb on - strand at 1942.853 kb on - strand at 1942.853 kb on - strand at 1942.893 kb on + strand at 1942.893 kb on + strand at 1942.893 kb on + strand at 1942.893 kb on + strand at 1942.894 kb on - strand at 1942.937 kb on + strand at 1942.937 kb on + strand at 1942.937 kb on + strand at 1942.937 kb on + strand at 1942.938 kb on - strand at 1942.970 kb on + strand at 1942.971 kb on - strand at 1942.971 kb on - strand at 1943.153 kb on + strand, within ABZR87_RS09175 at 1943.153 kb on + strand, within ABZR87_RS09175 at 1943.282 kb on + strand, within ABZR87_RS09175 at 1943.283 kb on - strand, within ABZR87_RS09175 at 1943.718 kb on + strand at 1943.718 kb on + strand at 1943.718 kb on + strand at 1943.718 kb on + strand at 1943.719 kb on - strand at 1943.719 kb on - strand at 1943.844 kb on + strand, within ABZR87_RS09180 at 1943.844 kb on + strand, within ABZR87_RS09180 at 1943.844 kb on + strand, within ABZR87_RS09180 at 1943.845 kb on - strand, within ABZR87_RS09180 at 1943.845 kb on - strand, within ABZR87_RS09180 at 1944.187 kb on + strand at 1944.187 kb on + strand at 1944.188 kb on - strand at 1944.188 kb on - strand at 1944.236 kb on + strand at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.268 kb on + strand, within ABZR87_RS09185 at 1944.269 kb on - strand, within ABZR87_RS09185 at 1944.269 kb on - strand, within ABZR87_RS09185 at 1944.269 kb on - strand, within ABZR87_RS09185 at 1944.269 kb on - strand, within ABZR87_RS09185 at 1944.673 kb on + strand at 1944.673 kb on + strand at 1944.673 kb on + strand at 1944.674 kb on - strand at 1944.719 kb on - strand at 1944.719 kb on - strand at 1944.769 kb on + strand at 1944.769 kb on + strand at 1944.769 kb on + strand at 1944.770 kb on - strand at 1944.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 1,941,887 + ABZR87_RS09170 0.60 +0.8 1,942,062 + ABZR87_RS09170 0.68 +1.6 1,942,062 + ABZR87_RS09170 0.68 -0.5 1,942,062 + ABZR87_RS09170 0.68 -0.7 1,942,062 + ABZR87_RS09170 0.68 -1.1 1,942,063 - ABZR87_RS09170 0.68 -0.5 1,942,063 - ABZR87_RS09170 0.68 +1.1 1,942,063 - ABZR87_RS09170 0.68 -0.4 1,942,063 - ABZR87_RS09170 0.68 +1.0 1,942,063 - ABZR87_RS09170 0.68 -0.7 1,942,063 - ABZR87_RS09170 0.68 -0.1 1,942,063 - ABZR87_RS09170 0.68 -1.4 1,942,093 - ABZR87_RS09170 0.69 +0.0 1,942,093 - ABZR87_RS09170 0.69 -0.2 1,942,218 + ABZR87_RS09170 0.75 +0.6 1,942,219 - ABZR87_RS09170 0.75 -0.5 1,942,219 - ABZR87_RS09170 0.75 -0.2 1,942,219 - ABZR87_RS09170 0.75 -0.4 1,942,219 - ABZR87_RS09170 0.75 +0.1 1,942,319 + ABZR87_RS09170 0.79 +0.1 1,942,320 - ABZR87_RS09170 0.79 +0.4 1,942,587 + -0.1 1,942,587 + +0.3 1,942,587 + -0.2 1,942,587 + -0.7 1,942,587 + +0.1 1,942,588 - -0.2 1,942,588 - -0.2 1,942,588 - -0.2 1,942,588 - +0.1 1,942,692 + +0.3 1,942,692 + -0.1 1,942,795 + -0.0 1,942,795 + +0.2 1,942,795 + -0.5 1,942,795 + -0.2 1,942,795 + -3.2 1,942,795 + -0.1 1,942,795 + +0.7 1,942,795 + +0.9 1,942,796 - +0.1 1,942,796 - +0.0 1,942,796 - +0.0 1,942,796 - -0.4 1,942,796 - +1.6 1,942,796 - +0.1 1,942,817 - +0.5 1,942,817 - +0.3 1,942,819 - +0.2 1,942,848 + +1.4 1,942,848 + -0.0 1,942,848 + -0.2 1,942,848 + -0.2 1,942,848 + -1.5 1,942,848 + +1.5 1,942,848 + -0.2 1,942,848 + +0.2 1,942,848 + +0.2 1,942,848 + -0.2 1,942,848 + -0.4 1,942,849 - +0.4 1,942,849 - -0.3 1,942,849 - +0.8 1,942,849 - +0.1 1,942,849 - -1.4 1,942,849 - +0.3 1,942,849 - +0.2 1,942,849 - -0.2 1,942,849 - -0.8 1,942,850 + +0.0 1,942,850 + -0.4 1,942,850 + +0.6 1,942,850 + -0.9 1,942,850 + +0.5 1,942,850 + +0.2 1,942,850 + -0.0 1,942,850 + +0.2 1,942,850 + +0.7 1,942,851 - -0.1 1,942,851 - -0.2 1,942,851 - +0.9 1,942,851 - -1.3 1,942,851 - +0.2 1,942,851 - -0.4 1,942,851 - -0.7 1,942,852 + +0.9 1,942,852 + -0.1 1,942,852 + -1.0 1,942,852 + -0.4 1,942,852 + +0.6 1,942,853 - +0.6 1,942,853 - +0.2 1,942,853 - -0.9 1,942,853 - -0.3 1,942,853 - +0.4 1,942,893 + +0.8 1,942,893 + +0.4 1,942,893 + +0.6 1,942,893 + -0.1 1,942,894 - +0.9 1,942,937 + -0.2 1,942,937 + +0.0 1,942,937 + +0.8 1,942,937 + +0.2 1,942,938 - +0.1 1,942,970 + -0.2 1,942,971 - +0.6 1,942,971 - +0.0 1,943,153 + ABZR87_RS09175 0.30 +0.3 1,943,153 + ABZR87_RS09175 0.30 +1.9 1,943,282 + ABZR87_RS09175 0.44 +0.2 1,943,283 - ABZR87_RS09175 0.44 +0.3 1,943,718 + +0.6 1,943,718 + +0.3 1,943,718 + +1.0 1,943,718 + +1.8 1,943,719 - -0.5 1,943,719 - -2.0 1,943,844 + ABZR87_RS09180 0.14 -0.7 1,943,844 + ABZR87_RS09180 0.14 -0.9 1,943,844 + ABZR87_RS09180 0.14 -1.0 1,943,845 - ABZR87_RS09180 0.15 +0.1 1,943,845 - ABZR87_RS09180 0.15 +1.1 1,944,187 + -0.8 1,944,187 + +0.2 1,944,188 - +0.2 1,944,188 - +0.2 1,944,236 + +0.2 1,944,268 + ABZR87_RS09185 0.12 +0.3 1,944,268 + ABZR87_RS09185 0.12 +0.5 1,944,268 + ABZR87_RS09185 0.12 +0.5 1,944,268 + ABZR87_RS09185 0.12 -0.4 1,944,268 + ABZR87_RS09185 0.12 -0.0 1,944,268 + ABZR87_RS09185 0.12 -0.3 1,944,268 + ABZR87_RS09185 0.12 +0.2 1,944,268 + ABZR87_RS09185 0.12 +1.6 1,944,268 + ABZR87_RS09185 0.12 -0.7 1,944,269 - ABZR87_RS09185 0.12 -0.5 1,944,269 - ABZR87_RS09185 0.12 +0.8 1,944,269 - ABZR87_RS09185 0.12 -0.7 1,944,269 - ABZR87_RS09185 0.12 +0.1 1,944,673 + +0.2 1,944,673 + -0.7 1,944,673 + -0.0 1,944,674 - +0.1 1,944,719 - +0.3 1,944,719 - +0.1 1,944,769 + +0.4 1,944,769 + +0.6 1,944,769 + -0.0 1,944,770 - -1.1 1,944,770 - -0.7
Or see this region's nucleotide sequence