Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08975

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08965 and ABZR87_RS08970 overlap by 4 nucleotidesABZR87_RS08970 and ABZR87_RS08975 are separated by 12 nucleotidesABZR87_RS08975 and ABZR87_RS08980 are separated by 37 nucleotides ABZR87_RS08965: ABZR87_RS08965 - tol-pal system-associated acyl-CoA thioesterase, at 1,903,672 to 1,904,076 _RS08965 ABZR87_RS08970: ABZR87_RS08970 - protein TolQ, at 1,904,073 to 1,904,765 _RS08970 ABZR87_RS08975: ABZR87_RS08975 - protein TolR, at 1,904,778 to 1,905,212 _RS08975 ABZR87_RS08980: ABZR87_RS08980 - cell envelope integrity protein TolA, at 1,905,250 to 1,906,278 _RS08980 Position (kb) 1904 1905 1906Strain fitness (log2 ratio) -1 0 1 2 3 4at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.190 kb on + strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.191 kb on - strand, within ABZR87_RS08970at 1904.287 kb on - strand, within ABZR87_RS08970at 1904.287 kb on - strand, within ABZR87_RS08970at 1904.429 kb on + strand, within ABZR87_RS08970at 1904.429 kb on + strand, within ABZR87_RS08970at 1904.429 kb on + strand, within ABZR87_RS08970at 1904.430 kb on - strand, within ABZR87_RS08970at 1904.430 kb on - strand, within ABZR87_RS08970at 1904.430 kb on - strand, within ABZR87_RS08970at 1904.430 kb on - strand, within ABZR87_RS08970at 1904.442 kb on + strand, within ABZR87_RS08970at 1904.442 kb on + strand, within ABZR87_RS08970at 1904.443 kb on - strand, within ABZR87_RS08970at 1904.511 kb on + strand, within ABZR87_RS08970at 1904.511 kb on + strand, within ABZR87_RS08970at 1904.511 kb on + strand, within ABZR87_RS08970at 1904.512 kb on - strand, within ABZR87_RS08970at 1904.512 kb on - strand, within ABZR87_RS08970at 1904.512 kb on - strand, within ABZR87_RS08970at 1904.670 kb on + strand, within ABZR87_RS08970at 1904.671 kb on - strand, within ABZR87_RS08970at 1904.671 kb on - strand, within ABZR87_RS08970at 1904.671 kb on - strand, within ABZR87_RS08970at 1904.680 kb on - strand, within ABZR87_RS08970at 1904.783 kb on + strandat 1905.133 kb on - strand, within ABZR87_RS08975at 1905.256 kb on - strandat 1905.256 kb on - strandat 1905.274 kb on + strandat 1905.274 kb on + strandat 1905.275 kb on - strandat 1905.867 kb on + strand, within ABZR87_RS08980at 1905.868 kb on - strand, within ABZR87_RS08980at 1905.868 kb on - strand, within ABZR87_RS08980at 1906.171 kb on + strand, within ABZR87_RS08980at 1906.171 kb on + strand, within ABZR87_RS08980at 1906.172 kb on - strand, within ABZR87_RS08980at 1906.172 kb on - strand, within ABZR87_RS08980at 1906.172 kb on - strand, within ABZR87_RS08980at 1906.172 kb on - strand, within ABZR87_RS08980

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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1,904,190 + ABZR87_RS08970 0.17 +1.1
1,904,190 + ABZR87_RS08970 0.17 +0.1
1,904,190 + ABZR87_RS08970 0.17 +1.6
1,904,190 + ABZR87_RS08970 0.17 +2.2
1,904,190 + ABZR87_RS08970 0.17 -0.1
1,904,190 + ABZR87_RS08970 0.17 -1.2
1,904,191 - ABZR87_RS08970 0.17 +2.1
1,904,191 - ABZR87_RS08970 0.17 +1.6
1,904,191 - ABZR87_RS08970 0.17 +0.1
1,904,191 - ABZR87_RS08970 0.17 -0.5
1,904,191 - ABZR87_RS08970 0.17 -0.7
1,904,191 - ABZR87_RS08970 0.17 +3.0
1,904,191 - ABZR87_RS08970 0.17 -1.5
1,904,191 - ABZR87_RS08970 0.17 +4.0
1,904,191 - ABZR87_RS08970 0.17 +1.1
1,904,191 - ABZR87_RS08970 0.17 -1.3
1,904,191 - ABZR87_RS08970 0.17 -0.7
1,904,191 - ABZR87_RS08970 0.17 +0.4
1,904,191 - ABZR87_RS08970 0.17 -1.2
1,904,287 - ABZR87_RS08970 0.31 +1.2
1,904,287 - ABZR87_RS08970 0.31 +0.2
1,904,429 + ABZR87_RS08970 0.51 -0.9
1,904,429 + ABZR87_RS08970 0.51 +1.3
1,904,429 + ABZR87_RS08970 0.51 +1.3
1,904,430 - ABZR87_RS08970 0.52 +0.8
1,904,430 - ABZR87_RS08970 0.52 +1.6
1,904,430 - ABZR87_RS08970 0.52 +0.7
1,904,430 - ABZR87_RS08970 0.52 -1.5
1,904,442 + ABZR87_RS08970 0.53 -1.2
1,904,442 + ABZR87_RS08970 0.53 -0.5
1,904,443 - ABZR87_RS08970 0.53 +0.3
1,904,511 + ABZR87_RS08970 0.63 +0.1
1,904,511 + ABZR87_RS08970 0.63 +0.4
1,904,511 + ABZR87_RS08970 0.63 +0.6
1,904,512 - ABZR87_RS08970 0.63 +2.2
1,904,512 - ABZR87_RS08970 0.63 +0.5
1,904,512 - ABZR87_RS08970 0.63 +0.5
1,904,670 + ABZR87_RS08970 0.86 +1.1
1,904,671 - ABZR87_RS08970 0.86 +0.6
1,904,671 - ABZR87_RS08970 0.86 +2.2
1,904,671 - ABZR87_RS08970 0.86 +0.4
1,904,680 - ABZR87_RS08970 0.88 +0.6
1,904,783 + -0.5
1,905,133 - ABZR87_RS08975 0.82 +1.1
1,905,256 - +2.2
1,905,256 - +0.6
1,905,274 + +4.0
1,905,274 + -0.2
1,905,275 - +0.1
1,905,867 + ABZR87_RS08980 0.60 +0.1
1,905,868 - ABZR87_RS08980 0.60 +0.1
1,905,868 - ABZR87_RS08980 0.60 -0.3
1,906,171 + ABZR87_RS08980 0.90 -1.4
1,906,171 + ABZR87_RS08980 0.90 +0.6
1,906,172 - ABZR87_RS08980 0.90 -1.2
1,906,172 - ABZR87_RS08980 0.90 +0.1
1,906,172 - ABZR87_RS08980 0.90 -0.7
1,906,172 - ABZR87_RS08980 0.90 +0.9

Or see this region's nucleotide sequence