Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08775

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08765 and ABZR87_RS08770 are separated by 145 nucleotidesABZR87_RS08770 and ABZR87_RS08775 are separated by 23 nucleotidesABZR87_RS08775 and ABZR87_RS08780 are separated by 95 nucleotides ABZR87_RS08765: ABZR87_RS08765 - TolC family outer membrane protein, at 1,863,625 to 1,865,061 _RS08765 ABZR87_RS08770: ABZR87_RS08770 - rhodanese-like domain-containing protein, at 1,865,207 to 1,865,539 _RS08770 ABZR87_RS08775: ABZR87_RS08775 - protein-L-isoaspartate O-methyltransferase, at 1,865,563 to 1,866,213 _RS08775 ABZR87_RS08780: ABZR87_RS08780 - TetR/AcrR family transcriptional regulator, at 1,866,309 to 1,867,076 _RS08780 Position (kb) 1865 1866 1867Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1864.625 kb on + strand, within ABZR87_RS08765at 1864.712 kb on + strand, within ABZR87_RS08765at 1864.712 kb on + strand, within ABZR87_RS08765at 1864.712 kb on + strand, within ABZR87_RS08765at 1864.712 kb on + strand, within ABZR87_RS08765at 1864.712 kb on + strand, within ABZR87_RS08765at 1864.712 kb on + strand, within ABZR87_RS08765at 1864.713 kb on - strand, within ABZR87_RS08765at 1864.713 kb on - strand, within ABZR87_RS08765at 1864.713 kb on - strand, within ABZR87_RS08765at 1864.713 kb on - strand, within ABZR87_RS08765at 1864.713 kb on - strand, within ABZR87_RS08765at 1865.067 kb on + strandat 1865.091 kb on + strandat 1865.091 kb on + strandat 1865.092 kb on - strandat 1865.092 kb on - strandat 1865.211 kb on + strandat 1865.211 kb on + strandat 1865.211 kb on + strandat 1865.211 kb on + strandat 1865.212 kb on - strandat 1865.212 kb on - strandat 1865.212 kb on - strandat 1865.271 kb on + strand, within ABZR87_RS08770at 1865.271 kb on + strand, within ABZR87_RS08770at 1865.271 kb on + strand, within ABZR87_RS08770at 1865.271 kb on + strand, within ABZR87_RS08770at 1865.271 kb on + strand, within ABZR87_RS08770at 1865.271 kb on + strand, within ABZR87_RS08770at 1865.272 kb on - strand, within ABZR87_RS08770at 1865.272 kb on - strand, within ABZR87_RS08770at 1865.272 kb on - strand, within ABZR87_RS08770at 1865.272 kb on - strand, within ABZR87_RS08770at 1865.438 kb on + strand, within ABZR87_RS08770at 1865.596 kb on + strandat 1865.596 kb on + strandat 1865.596 kb on + strandat 1865.597 kb on - strandat 1865.597 kb on - strandat 1865.612 kb on + strandat 1865.612 kb on + strandat 1865.612 kb on + strandat 1865.612 kb on + strandat 1865.612 kb on + strandat 1865.612 kb on + strandat 1865.613 kb on - strandat 1865.613 kb on - strandat 1865.613 kb on - strandat 1865.613 kb on - strandat 1865.613 kb on - strandat 1865.639 kb on + strand, within ABZR87_RS08775at 1865.640 kb on - strand, within ABZR87_RS08775at 1865.698 kb on + strand, within ABZR87_RS08775at 1865.786 kb on + strand, within ABZR87_RS08775at 1865.786 kb on + strand, within ABZR87_RS08775at 1865.787 kb on - strand, within ABZR87_RS08775at 1865.787 kb on - strand, within ABZR87_RS08775at 1865.946 kb on - strand, within ABZR87_RS08775at 1866.090 kb on - strand, within ABZR87_RS08775at 1866.090 kb on - strand, within ABZR87_RS08775at 1866.104 kb on + strand, within ABZR87_RS08775at 1866.104 kb on + strand, within ABZR87_RS08775at 1866.104 kb on + strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.105 kb on - strand, within ABZR87_RS08775at 1866.276 kb on + strandat 1866.276 kb on + strandat 1866.277 kb on - strandat 1866.277 kb on - strandat 1866.277 kb on - strandat 1866.277 kb on - strandat 1866.444 kb on + strand, within ABZR87_RS08780at 1866.444 kb on + strand, within ABZR87_RS08780at 1866.652 kb on + strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.653 kb on - strand, within ABZR87_RS08780at 1866.655 kb on + strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.656 kb on - strand, within ABZR87_RS08780at 1866.877 kb on + strand, within ABZR87_RS08780at 1866.877 kb on + strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.878 kb on - strand, within ABZR87_RS08780at 1866.883 kb on + strand, within ABZR87_RS08780at 1866.884 kb on - strand, within ABZR87_RS08780at 1866.884 kb on - strand, within ABZR87_RS08780at 1866.943 kb on + strand, within ABZR87_RS08780at 1867.058 kb on + strandat 1867.097 kb on - strandat 1867.097 kb on - strandat 1867.115 kb on + strandat 1867.116 kb on - strandat 1867.121 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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1,864,625 + ABZR87_RS08765 0.70 +0.8
1,864,712 + ABZR87_RS08765 0.76 +0.5
1,864,712 + ABZR87_RS08765 0.76 +0.3
1,864,712 + ABZR87_RS08765 0.76 -1.0
1,864,712 + ABZR87_RS08765 0.76 +0.5
1,864,712 + ABZR87_RS08765 0.76 -0.4
1,864,712 + ABZR87_RS08765 0.76 -0.5
1,864,713 - ABZR87_RS08765 0.76 +0.4
1,864,713 - ABZR87_RS08765 0.76 -1.7
1,864,713 - ABZR87_RS08765 0.76 -1.0
1,864,713 - ABZR87_RS08765 0.76 -0.8
1,864,713 - ABZR87_RS08765 0.76 -0.6
1,865,067 + -0.3
1,865,091 + +0.2
1,865,091 + -1.0
1,865,092 - +0.8
1,865,092 - -0.4
1,865,211 + +0.3
1,865,211 + -1.3
1,865,211 + -1.0
1,865,211 + +0.3
1,865,212 - -0.1
1,865,212 - -1.0
1,865,212 - -0.0
1,865,271 + ABZR87_RS08770 0.19 -0.3
1,865,271 + ABZR87_RS08770 0.19 -0.8
1,865,271 + ABZR87_RS08770 0.19 -0.3
1,865,271 + ABZR87_RS08770 0.19 +0.1
1,865,271 + ABZR87_RS08770 0.19 -0.2
1,865,271 + ABZR87_RS08770 0.19 -0.2
1,865,272 - ABZR87_RS08770 0.20 -1.3
1,865,272 - ABZR87_RS08770 0.20 +1.0
1,865,272 - ABZR87_RS08770 0.20 -0.9
1,865,272 - ABZR87_RS08770 0.20 -0.6
1,865,438 + ABZR87_RS08770 0.69 -0.4
1,865,596 + +1.6
1,865,596 + -0.2
1,865,596 + +0.8
1,865,597 - -0.9
1,865,597 - +1.3
1,865,612 + -0.2
1,865,612 + -0.9
1,865,612 + +0.6
1,865,612 + -0.3
1,865,612 + -0.7
1,865,612 + -0.2
1,865,613 - -0.8
1,865,613 - -0.6
1,865,613 - -0.3
1,865,613 - -1.8
1,865,613 - -0.4
1,865,639 + ABZR87_RS08775 0.12 +2.3
1,865,640 - ABZR87_RS08775 0.12 -1.0
1,865,698 + ABZR87_RS08775 0.21 -0.6
1,865,786 + ABZR87_RS08775 0.34 -1.5
1,865,786 + ABZR87_RS08775 0.34 +1.6
1,865,787 - ABZR87_RS08775 0.34 -0.6
1,865,787 - ABZR87_RS08775 0.34 +1.4
1,865,946 - ABZR87_RS08775 0.59 -0.1
1,866,090 - ABZR87_RS08775 0.81 +0.0
1,866,090 - ABZR87_RS08775 0.81 -0.5
1,866,104 + ABZR87_RS08775 0.83 +0.2
1,866,104 + ABZR87_RS08775 0.83 -0.5
1,866,104 + ABZR87_RS08775 0.83 -0.3
1,866,105 - ABZR87_RS08775 0.83 -1.2
1,866,105 - ABZR87_RS08775 0.83 +2.2
1,866,105 - ABZR87_RS08775 0.83 +0.3
1,866,105 - ABZR87_RS08775 0.83 -0.5
1,866,105 - ABZR87_RS08775 0.83 +0.2
1,866,105 - ABZR87_RS08775 0.83 -1.1
1,866,105 - ABZR87_RS08775 0.83 -0.8
1,866,105 - ABZR87_RS08775 0.83 +0.4
1,866,105 - ABZR87_RS08775 0.83 +0.3
1,866,105 - ABZR87_RS08775 0.83 +1.5
1,866,105 - ABZR87_RS08775 0.83 -0.9
1,866,276 + +0.3
1,866,276 + -1.4
1,866,277 - +1.6
1,866,277 - +0.1
1,866,277 - +0.8
1,866,277 - -0.3
1,866,444 + ABZR87_RS08780 0.18 +0.2
1,866,444 + ABZR87_RS08780 0.18 -1.2
1,866,652 + ABZR87_RS08780 0.45 -0.1
1,866,653 - ABZR87_RS08780 0.45 +0.2
1,866,653 - ABZR87_RS08780 0.45 +0.2
1,866,653 - ABZR87_RS08780 0.45 -0.0
1,866,653 - ABZR87_RS08780 0.45 +0.4
1,866,653 - ABZR87_RS08780 0.45 -1.7
1,866,653 - ABZR87_RS08780 0.45 -0.7
1,866,653 - ABZR87_RS08780 0.45 +0.9
1,866,653 - ABZR87_RS08780 0.45 +0.1
1,866,653 - ABZR87_RS08780 0.45 -0.4
1,866,655 + ABZR87_RS08780 0.45 -0.4
1,866,656 - ABZR87_RS08780 0.45 +0.7
1,866,656 - ABZR87_RS08780 0.45 -0.6
1,866,656 - ABZR87_RS08780 0.45 -0.2
1,866,656 - ABZR87_RS08780 0.45 +0.1
1,866,656 - ABZR87_RS08780 0.45 -0.3
1,866,656 - ABZR87_RS08780 0.45 -0.2
1,866,877 + ABZR87_RS08780 0.74 +1.2
1,866,877 + ABZR87_RS08780 0.74 -3.1
1,866,878 - ABZR87_RS08780 0.74 -0.1
1,866,878 - ABZR87_RS08780 0.74 +0.8
1,866,878 - ABZR87_RS08780 0.74 -0.8
1,866,878 - ABZR87_RS08780 0.74 -0.4
1,866,878 - ABZR87_RS08780 0.74 +0.4
1,866,883 + ABZR87_RS08780 0.75 -0.2
1,866,884 - ABZR87_RS08780 0.75 -0.9
1,866,884 - ABZR87_RS08780 0.75 -0.2
1,866,943 + ABZR87_RS08780 0.83 -0.2
1,867,058 + -0.8
1,867,097 - -0.0
1,867,097 - +1.6
1,867,115 + -0.5
1,867,116 - -0.8
1,867,121 - -1.0

Or see this region's nucleotide sequence