Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08270

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08260 and ABZR87_RS08265 overlap by 4 nucleotidesABZR87_RS08265 and ABZR87_RS08270 overlap by 4 nucleotidesABZR87_RS08270 and ABZR87_RS08275 are separated by 237 nucleotidesABZR87_RS08275 and ABZR87_RS08280 are separated by 18 nucleotides ABZR87_RS08260: ABZR87_RS08260 - intermembrane transport protein PqiB, at 1,754,172 to 1,755,815 _RS08260 ABZR87_RS08265: ABZR87_RS08265 - paraquat-inducible protein A, at 1,755,812 to 1,756,549 _RS08265 ABZR87_RS08270: ABZR87_RS08270 - paraquat-inducible protein A, at 1,756,546 to 1,757,325 _RS08270 ABZR87_RS08275: ABZR87_RS08275 - hypothetical protein, at 1,757,563 to 1,758,087 _RS08275 ABZR87_RS08280: ABZR87_RS08280 - S-formylglutathione hydrolase, at 1,758,106 to 1,758,969 _RS08280 Position (kb) 1756 1757 1758Strain fitness (log2 ratio) -2 -1 0 1 2at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.604 kb on + strand, within ABZR87_RS08260at 1755.605 kb on - strand, within ABZR87_RS08260at 1755.815 kb on + strandat 1756.038 kb on + strand, within ABZR87_RS08265at 1756.039 kb on - strand, within ABZR87_RS08265at 1756.039 kb on - strand, within ABZR87_RS08265at 1756.189 kb on - strand, within ABZR87_RS08265at 1756.241 kb on - strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.272 kb on + strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.273 kb on - strand, within ABZR87_RS08265at 1756.582 kb on + strandat 1756.582 kb on + strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.583 kb on - strandat 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.892 kb on + strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.893 kb on - strand, within ABZR87_RS08270at 1756.952 kb on + strand, within ABZR87_RS08270at 1756.953 kb on - strand, within ABZR87_RS08270at 1756.953 kb on - strand, within ABZR87_RS08270at 1756.953 kb on - strand, within ABZR87_RS08270at 1756.958 kb on + strand, within ABZR87_RS08270at 1756.958 kb on + strand, within ABZR87_RS08270at 1756.958 kb on + strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1756.959 kb on - strand, within ABZR87_RS08270at 1757.048 kb on + strand, within ABZR87_RS08270at 1757.049 kb on - strand, within ABZR87_RS08270at 1757.112 kb on - strand, within ABZR87_RS08270at 1757.397 kb on - strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.398 kb on + strandat 1757.399 kb on - strandat 1757.399 kb on - strandat 1757.399 kb on - strandat 1757.399 kb on - strandat 1757.402 kb on + strandat 1757.403 kb on - strandat 1757.403 kb on - strandat 1757.403 kb on - strandat 1757.416 kb on + strandat 1757.416 kb on + strandat 1757.416 kb on + strandat 1757.416 kb on + strandat 1757.417 kb on - strandat 1757.417 kb on - strandat 1757.417 kb on - strandat 1757.418 kb on + strandat 1757.418 kb on + strandat 1757.464 kb on + strandat 1757.464 kb on + strandat 1757.464 kb on + strandat 1757.464 kb on + strandat 1757.465 kb on - strandat 1757.465 kb on - strandat 1757.465 kb on - strandat 1757.569 kb on + strandat 1757.570 kb on - strandat 1757.570 kb on - strandat 1757.570 kb on - strandat 1757.570 kb on - strandat 1757.570 kb on - strandat 1757.629 kb on + strand, within ABZR87_RS08275at 1757.629 kb on + strand, within ABZR87_RS08275at 1757.629 kb on + strand, within ABZR87_RS08275at 1757.630 kb on - strand, within ABZR87_RS08275at 1757.698 kb on - strand, within ABZR87_RS08275at 1757.781 kb on + strand, within ABZR87_RS08275at 1757.781 kb on + strand, within ABZR87_RS08275at 1757.781 kb on + strand, within ABZR87_RS08275at 1757.781 kb on + strand, within ABZR87_RS08275at 1757.821 kb on - strand, within ABZR87_RS08275at 1757.821 kb on - strand, within ABZR87_RS08275at 1757.821 kb on - strand, within ABZR87_RS08275at 1757.821 kb on - strand, within ABZR87_RS08275at 1757.851 kb on + strand, within ABZR87_RS08275at 1757.962 kb on - strand, within ABZR87_RS08275at 1757.973 kb on + strand, within ABZR87_RS08275at 1758.107 kb on + strandat 1758.108 kb on - strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.164 kb on + strandat 1758.165 kb on - strandat 1758.165 kb on - strandat 1758.167 kb on + strandat 1758.168 kb on - strandat 1758.168 kb on - strandat 1758.179 kb on + strandat 1758.248 kb on + strand, within ABZR87_RS08280at 1758.248 kb on + strand, within ABZR87_RS08280at 1758.249 kb on - strand, within ABZR87_RS08280at 1758.249 kb on - strand, within ABZR87_RS08280

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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1,755,604 + ABZR87_RS08260 0.87 +1.0
1,755,604 + ABZR87_RS08260 0.87 -0.5
1,755,604 + ABZR87_RS08260 0.87 -1.9
1,755,604 + ABZR87_RS08260 0.87 +0.6
1,755,604 + ABZR87_RS08260 0.87 +0.1
1,755,605 - ABZR87_RS08260 0.87 -0.3
1,755,815 + -0.2
1,756,038 + ABZR87_RS08265 0.31 +0.5
1,756,039 - ABZR87_RS08265 0.31 +2.2
1,756,039 - ABZR87_RS08265 0.31 -0.2
1,756,189 - ABZR87_RS08265 0.51 +0.1
1,756,241 - ABZR87_RS08265 0.58 +0.6
1,756,272 + ABZR87_RS08265 0.62 +1.0
1,756,272 + ABZR87_RS08265 0.62 -0.4
1,756,272 + ABZR87_RS08265 0.62 -0.2
1,756,272 + ABZR87_RS08265 0.62 +0.1
1,756,272 + ABZR87_RS08265 0.62 -0.4
1,756,272 + ABZR87_RS08265 0.62 -1.1
1,756,273 - ABZR87_RS08265 0.62 -0.4
1,756,273 - ABZR87_RS08265 0.62 +0.5
1,756,273 - ABZR87_RS08265 0.62 +1.4
1,756,273 - ABZR87_RS08265 0.62 +0.1
1,756,273 - ABZR87_RS08265 0.62 +0.7
1,756,273 - ABZR87_RS08265 0.62 -0.8
1,756,273 - ABZR87_RS08265 0.62 +0.6
1,756,273 - ABZR87_RS08265 0.62 +0.6
1,756,582 + +0.6
1,756,582 + +0.3
1,756,583 - -0.2
1,756,583 - -0.7
1,756,583 - -0.2
1,756,583 - +0.5
1,756,892 + ABZR87_RS08270 0.44 +1.1
1,756,892 + ABZR87_RS08270 0.44 +0.2
1,756,892 + ABZR87_RS08270 0.44 +0.2
1,756,892 + ABZR87_RS08270 0.44 +0.1
1,756,892 + ABZR87_RS08270 0.44 +2.0
1,756,892 + ABZR87_RS08270 0.44 +0.4
1,756,892 + ABZR87_RS08270 0.44 -0.1
1,756,893 - ABZR87_RS08270 0.44 +2.6
1,756,893 - ABZR87_RS08270 0.44 +0.4
1,756,893 - ABZR87_RS08270 0.44 +0.9
1,756,893 - ABZR87_RS08270 0.44 -1.0
1,756,893 - ABZR87_RS08270 0.44 +0.1
1,756,893 - ABZR87_RS08270 0.44 -0.2
1,756,893 - ABZR87_RS08270 0.44 +0.8
1,756,893 - ABZR87_RS08270 0.44 -1.4
1,756,952 + ABZR87_RS08270 0.52 +0.1
1,756,953 - ABZR87_RS08270 0.52 +0.4
1,756,953 - ABZR87_RS08270 0.52 +0.2
1,756,953 - ABZR87_RS08270 0.52 +0.6
1,756,958 + ABZR87_RS08270 0.53 -0.1
1,756,958 + ABZR87_RS08270 0.53 +1.0
1,756,958 + ABZR87_RS08270 0.53 +0.3
1,756,959 - ABZR87_RS08270 0.53 +0.4
1,756,959 - ABZR87_RS08270 0.53 -0.6
1,756,959 - ABZR87_RS08270 0.53 +0.6
1,756,959 - ABZR87_RS08270 0.53 +1.6
1,757,048 + ABZR87_RS08270 0.64 +0.7
1,757,049 - ABZR87_RS08270 0.64 +0.8
1,757,112 - ABZR87_RS08270 0.73 +0.4
1,757,397 - +0.1
1,757,398 + -0.0
1,757,398 + -0.5
1,757,398 + +0.1
1,757,398 + +0.0
1,757,398 + -0.4
1,757,399 - -0.1
1,757,399 - -0.6
1,757,399 - +0.1
1,757,399 - +0.1
1,757,402 + +0.1
1,757,403 - -0.0
1,757,403 - +0.5
1,757,403 - +0.2
1,757,416 + +0.1
1,757,416 + +0.6
1,757,416 + +0.2
1,757,416 + -0.7
1,757,417 - +1.4
1,757,417 - +1.3
1,757,417 - +1.6
1,757,418 + -0.3
1,757,418 + +0.4
1,757,464 + -0.6
1,757,464 + +0.2
1,757,464 + -0.2
1,757,464 + -0.1
1,757,465 - -0.6
1,757,465 - +0.2
1,757,465 - -0.9
1,757,569 + -0.1
1,757,570 - +1.1
1,757,570 - +0.3
1,757,570 - +1.3
1,757,570 - -0.7
1,757,570 - +0.5
1,757,629 + ABZR87_RS08275 0.13 -0.0
1,757,629 + ABZR87_RS08275 0.13 +0.2
1,757,629 + ABZR87_RS08275 0.13 -0.2
1,757,630 - ABZR87_RS08275 0.13 -0.1
1,757,698 - ABZR87_RS08275 0.26 +0.1
1,757,781 + ABZR87_RS08275 0.42 -0.8
1,757,781 + ABZR87_RS08275 0.42 -1.0
1,757,781 + ABZR87_RS08275 0.42 -0.3
1,757,781 + ABZR87_RS08275 0.42 +0.5
1,757,821 - ABZR87_RS08275 0.49 +0.1
1,757,821 - ABZR87_RS08275 0.49 +0.5
1,757,821 - ABZR87_RS08275 0.49 -1.0
1,757,821 - ABZR87_RS08275 0.49 -0.6
1,757,851 + ABZR87_RS08275 0.55 -0.7
1,757,962 - ABZR87_RS08275 0.76 -0.7
1,757,973 + ABZR87_RS08275 0.78 -0.1
1,758,107 + -1.7
1,758,108 - +1.1
1,758,164 + -0.1
1,758,164 + +1.1
1,758,164 + -1.1
1,758,164 + +0.5
1,758,164 + +0.6
1,758,164 + +0.1
1,758,165 - -0.3
1,758,165 - +0.4
1,758,167 + -0.0
1,758,168 - -0.1
1,758,168 - +0.1
1,758,179 + +0.5
1,758,248 + ABZR87_RS08280 0.16 +0.6
1,758,248 + ABZR87_RS08280 0.16 -0.6
1,758,249 - ABZR87_RS08280 0.17 +0.1
1,758,249 - ABZR87_RS08280 0.17 -0.4

Or see this region's nucleotide sequence