Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07730

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07720 and ABZR87_RS07725 are separated by 119 nucleotidesABZR87_RS07725 and ABZR87_RS07730 overlap by 4 nucleotidesABZR87_RS07730 and ABZR87_RS07735 are separated by 11 nucleotidesABZR87_RS07735 and ABZR87_RS07740 are separated by 31 nucleotides ABZR87_RS07720: ABZR87_RS07720 - lactoylglutathione lyase, at 1,637,287 to 1,637,694 _RS07720 ABZR87_RS07725: ABZR87_RS07725 - SprT family zinc-dependent metalloprotease, at 1,637,814 to 1,638,692 _RS07725 ABZR87_RS07730: ABZR87_RS07730 - lysophospholipid acyltransferase family protein, at 1,638,689 to 1,639,441 _RS07730 ABZR87_RS07735: ABZR87_RS07735 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 1,639,453 to 1,640,031 _RS07735 ABZR87_RS07740: ABZR87_RS07740 - glycine--tRNA ligase subunit beta, at 1,640,063 to 1,642,156 _RS07740 Position (kb) 1638 1639 1640Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1637.730 kb on + strandat 1637.730 kb on + strandat 1637.730 kb on + strandat 1637.730 kb on + strandat 1637.731 kb on - strandat 1637.731 kb on - strandat 1637.731 kb on - strandat 1637.736 kb on - strandat 1637.736 kb on - strandat 1637.831 kb on - strandat 1637.831 kb on - strandat 1637.959 kb on + strand, within ABZR87_RS07725at 1637.959 kb on + strand, within ABZR87_RS07725at 1637.959 kb on + strand, within ABZR87_RS07725at 1637.959 kb on + strand, within ABZR87_RS07725at 1637.960 kb on - strand, within ABZR87_RS07725at 1637.960 kb on - strand, within ABZR87_RS07725at 1637.960 kb on - strand, within ABZR87_RS07725at 1637.960 kb on - strand, within ABZR87_RS07725at 1637.960 kb on - strand, within ABZR87_RS07725at 1638.061 kb on + strand, within ABZR87_RS07725at 1638.061 kb on + strand, within ABZR87_RS07725at 1638.068 kb on + strand, within ABZR87_RS07725at 1638.068 kb on + strand, within ABZR87_RS07725at 1638.069 kb on - strand, within ABZR87_RS07725at 1638.069 kb on - strand, within ABZR87_RS07725at 1638.069 kb on - strand, within ABZR87_RS07725at 1638.094 kb on + strand, within ABZR87_RS07725at 1638.094 kb on + strand, within ABZR87_RS07725at 1638.094 kb on + strand, within ABZR87_RS07725at 1638.094 kb on + strand, within ABZR87_RS07725at 1638.094 kb on + strand, within ABZR87_RS07725at 1638.094 kb on + strand, within ABZR87_RS07725at 1638.094 kb on + strand, within ABZR87_RS07725at 1638.094 kb on + strand, within ABZR87_RS07725at 1638.095 kb on - strand, within ABZR87_RS07725at 1638.095 kb on - strand, within ABZR87_RS07725at 1638.095 kb on - strand, within ABZR87_RS07725at 1638.095 kb on - strand, within ABZR87_RS07725at 1638.095 kb on - strand, within ABZR87_RS07725at 1638.269 kb on + strand, within ABZR87_RS07725at 1638.493 kb on + strand, within ABZR87_RS07725at 1638.493 kb on + strand, within ABZR87_RS07725at 1638.493 kb on + strand, within ABZR87_RS07725at 1638.493 kb on + strand, within ABZR87_RS07725at 1638.493 kb on + strand, within ABZR87_RS07725at 1638.493 kb on + strand, within ABZR87_RS07725at 1638.494 kb on - strand, within ABZR87_RS07725at 1638.494 kb on - strand, within ABZR87_RS07725at 1638.494 kb on - strand, within ABZR87_RS07725at 1638.494 kb on - strand, within ABZR87_RS07725at 1638.494 kb on - strand, within ABZR87_RS07725at 1638.706 kb on - strandat 1638.706 kb on - strandat 1638.709 kb on + strandat 1638.710 kb on - strandat 1638.724 kb on + strandat 1638.817 kb on + strand, within ABZR87_RS07730at 1639.109 kb on + strand, within ABZR87_RS07730at 1639.109 kb on + strand, within ABZR87_RS07730at 1639.113 kb on + strand, within ABZR87_RS07730at 1639.113 kb on + strand, within ABZR87_RS07730at 1639.113 kb on + strand, within ABZR87_RS07730at 1639.113 kb on + strand, within ABZR87_RS07730at 1639.114 kb on - strand, within ABZR87_RS07730at 1639.133 kb on + strand, within ABZR87_RS07730at 1639.134 kb on - strand, within ABZR87_RS07730at 1639.260 kb on + strand, within ABZR87_RS07730at 1639.260 kb on + strand, within ABZR87_RS07730at 1639.260 kb on + strand, within ABZR87_RS07730at 1639.261 kb on - strand, within ABZR87_RS07730at 1639.417 kb on - strandat 1639.589 kb on - strand, within ABZR87_RS07735at 1639.785 kb on - strand, within ABZR87_RS07735at 1639.802 kb on + strand, within ABZR87_RS07735at 1639.802 kb on + strand, within ABZR87_RS07735at 1639.802 kb on + strand, within ABZR87_RS07735at 1639.802 kb on + strand, within ABZR87_RS07735at 1639.803 kb on - strand, within ABZR87_RS07735at 1639.803 kb on - strand, within ABZR87_RS07735at 1639.803 kb on - strand, within ABZR87_RS07735

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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1,637,730 + +1.4
1,637,730 + -0.2
1,637,730 + -1.9
1,637,730 + -0.1
1,637,731 - -0.9
1,637,731 - +0.1
1,637,731 - +0.4
1,637,736 - +0.4
1,637,736 - -0.1
1,637,831 - -0.1
1,637,831 - +0.5
1,637,959 + ABZR87_RS07725 0.16 -1.1
1,637,959 + ABZR87_RS07725 0.16 +0.8
1,637,959 + ABZR87_RS07725 0.16 +0.8
1,637,959 + ABZR87_RS07725 0.16 -0.2
1,637,960 - ABZR87_RS07725 0.17 +0.3
1,637,960 - ABZR87_RS07725 0.17 +0.0
1,637,960 - ABZR87_RS07725 0.17 +0.2
1,637,960 - ABZR87_RS07725 0.17 -0.2
1,637,960 - ABZR87_RS07725 0.17 -0.1
1,638,061 + ABZR87_RS07725 0.28 +0.0
1,638,061 + ABZR87_RS07725 0.28 +0.8
1,638,068 + ABZR87_RS07725 0.29 +0.3
1,638,068 + ABZR87_RS07725 0.29 +0.4
1,638,069 - ABZR87_RS07725 0.29 +0.8
1,638,069 - ABZR87_RS07725 0.29 -0.3
1,638,069 - ABZR87_RS07725 0.29 -0.2
1,638,094 + ABZR87_RS07725 0.32 -0.1
1,638,094 + ABZR87_RS07725 0.32 +0.6
1,638,094 + ABZR87_RS07725 0.32 +0.5
1,638,094 + ABZR87_RS07725 0.32 +0.3
1,638,094 + ABZR87_RS07725 0.32 +0.5
1,638,094 + ABZR87_RS07725 0.32 +1.0
1,638,094 + ABZR87_RS07725 0.32 +0.7
1,638,094 + ABZR87_RS07725 0.32 -0.2
1,638,095 - ABZR87_RS07725 0.32 +0.3
1,638,095 - ABZR87_RS07725 0.32 -1.2
1,638,095 - ABZR87_RS07725 0.32 +0.4
1,638,095 - ABZR87_RS07725 0.32 +0.9
1,638,095 - ABZR87_RS07725 0.32 +1.0
1,638,269 + ABZR87_RS07725 0.52 +0.9
1,638,493 + ABZR87_RS07725 0.77 +0.6
1,638,493 + ABZR87_RS07725 0.77 +0.7
1,638,493 + ABZR87_RS07725 0.77 -0.9
1,638,493 + ABZR87_RS07725 0.77 +1.0
1,638,493 + ABZR87_RS07725 0.77 -0.3
1,638,493 + ABZR87_RS07725 0.77 +0.1
1,638,494 - ABZR87_RS07725 0.77 -0.3
1,638,494 - ABZR87_RS07725 0.77 +0.2
1,638,494 - ABZR87_RS07725 0.77 -1.5
1,638,494 - ABZR87_RS07725 0.77 +0.7
1,638,494 - ABZR87_RS07725 0.77 -0.5
1,638,706 - +0.4
1,638,706 - -2.4
1,638,709 + -1.2
1,638,710 - +0.2
1,638,724 + -1.4
1,638,817 + ABZR87_RS07730 0.17 +0.6
1,639,109 + ABZR87_RS07730 0.56 +0.6
1,639,109 + ABZR87_RS07730 0.56 +0.6
1,639,113 + ABZR87_RS07730 0.56 -0.4
1,639,113 + ABZR87_RS07730 0.56 -0.7
1,639,113 + ABZR87_RS07730 0.56 +0.1
1,639,113 + ABZR87_RS07730 0.56 -0.9
1,639,114 - ABZR87_RS07730 0.56 +1.6
1,639,133 + ABZR87_RS07730 0.59 +1.6
1,639,134 - ABZR87_RS07730 0.59 +3.2
1,639,260 + ABZR87_RS07730 0.76 +0.1
1,639,260 + ABZR87_RS07730 0.76 -0.7
1,639,260 + ABZR87_RS07730 0.76 -0.9
1,639,261 - ABZR87_RS07730 0.76 -0.7
1,639,417 - +0.6
1,639,589 - ABZR87_RS07735 0.23 -0.0
1,639,785 - ABZR87_RS07735 0.57 -0.9
1,639,802 + ABZR87_RS07735 0.60 +1.4
1,639,802 + ABZR87_RS07735 0.60 -3.0
1,639,802 + ABZR87_RS07735 0.60 -1.5
1,639,802 + ABZR87_RS07735 0.60 +1.4
1,639,803 - ABZR87_RS07735 0.60 +0.1
1,639,803 - ABZR87_RS07735 0.60 -1.7
1,639,803 - ABZR87_RS07735 0.60 -0.3

Or see this region's nucleotide sequence