Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04235 and ABZR87_RS04240 are separated by 145 nucleotides ABZR87_RS04240 and ABZR87_RS04245 are separated by 65 nucleotides ABZR87_RS04245 and ABZR87_RS04250 are separated by 203 nucleotides
ABZR87_RS04235: ABZR87_RS04235 - heavy metal translocating P-type ATPase, at 884,645 to 886,867
_RS04235
ABZR87_RS04240: ABZR87_RS04240 - heavy-metal-associated domain-containing protein, at 887,013 to 887,225
_RS04240
ABZR87_RS04245: ABZR87_RS04245 - OmpW family protein, at 887,291 to 888,019
_RS04245
ABZR87_RS04250: ABZR87_RS04250 - delta(1)-pyrroline-2-carboxylate reductase family protein, at 888,223 to 889,224
_RS04250
Position (kb) 887
888 Strain fitness (log2 ratio) -2
-1
0
1
2 at 886.144 kb on + strand, within ABZR87_RS04235 at 886.156 kb on + strand, within ABZR87_RS04235 at 886.156 kb on + strand, within ABZR87_RS04235 at 886.156 kb on + strand, within ABZR87_RS04235 at 886.156 kb on + strand, within ABZR87_RS04235 at 886.299 kb on + strand, within ABZR87_RS04235 at 886.299 kb on + strand, within ABZR87_RS04235 at 886.300 kb on - strand, within ABZR87_RS04235 at 886.300 kb on - strand, within ABZR87_RS04235 at 886.366 kb on - strand, within ABZR87_RS04235 at 886.366 kb on - strand, within ABZR87_RS04235 at 886.366 kb on - strand, within ABZR87_RS04235 at 886.402 kb on + strand, within ABZR87_RS04235 at 886.402 kb on + strand, within ABZR87_RS04235 at 886.403 kb on - strand, within ABZR87_RS04235 at 886.443 kb on + strand, within ABZR87_RS04235 at 886.443 kb on + strand, within ABZR87_RS04235 at 886.444 kb on - strand, within ABZR87_RS04235 at 886.659 kb on + strand at 886.660 kb on - strand at 886.660 kb on - strand at 886.660 kb on - strand at 886.660 kb on - strand at 886.824 kb on + strand at 886.903 kb on - strand at 886.938 kb on + strand at 886.938 kb on + strand at 886.938 kb on + strand at 886.971 kb on - strand at 886.971 kb on - strand at 886.971 kb on - strand at 886.971 kb on - strand at 887.068 kb on + strand, within ABZR87_RS04240 at 887.069 kb on - strand, within ABZR87_RS04240 at 887.292 kb on + strand at 887.293 kb on - strand at 887.293 kb on - strand at 887.293 kb on - strand at 887.293 kb on - strand at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.416 kb on - strand, within ABZR87_RS04245 at 887.457 kb on + strand, within ABZR87_RS04245 at 887.457 kb on + strand, within ABZR87_RS04245 at 887.457 kb on + strand, within ABZR87_RS04245 at 887.458 kb on - strand, within ABZR87_RS04245 at 887.458 kb on - strand, within ABZR87_RS04245 at 887.458 kb on - strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.592 kb on + strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.593 kb on - strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.613 kb on + strand, within ABZR87_RS04245 at 887.614 kb on - strand, within ABZR87_RS04245 at 887.614 kb on - strand, within ABZR87_RS04245 at 887.614 kb on - strand, within ABZR87_RS04245 at 887.646 kb on + strand, within ABZR87_RS04245 at 887.646 kb on + strand, within ABZR87_RS04245 at 887.646 kb on + strand, within ABZR87_RS04245 at 887.646 kb on + strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.647 kb on - strand, within ABZR87_RS04245 at 887.700 kb on + strand, within ABZR87_RS04245 at 887.701 kb on - strand, within ABZR87_RS04245 at 887.784 kb on + strand, within ABZR87_RS04245 at 887.791 kb on + strand, within ABZR87_RS04245 at 887.791 kb on + strand, within ABZR87_RS04245 at 887.792 kb on - strand, within ABZR87_RS04245 at 887.792 kb on - strand, within ABZR87_RS04245 at 887.792 kb on - strand, within ABZR87_RS04245 at 887.792 kb on - strand, within ABZR87_RS04245 at 887.902 kb on + strand, within ABZR87_RS04245 at 887.902 kb on + strand, within ABZR87_RS04245 at 887.902 kb on + strand, within ABZR87_RS04245 at 887.902 kb on + strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 887.903 kb on - strand, within ABZR87_RS04245 at 888.010 kb on + strand at 888.010 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.025 kb on + strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.026 kb on - strand at 888.085 kb on + strand at 888.085 kb on + strand at 888.085 kb on + strand at 888.085 kb on + strand at 888.085 kb on + strand at 888.086 kb on - strand at 888.086 kb on - strand at 888.117 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.139 kb on + strand at 888.140 kb on - strand at 888.140 kb on - strand at 888.140 kb on - strand at 888.140 kb on - strand at 888.140 kb on - strand at 888.167 kb on + strand at 888.168 kb on - strand at 888.168 kb on - strand at 888.168 kb on - strand at 888.168 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 886,144 + ABZR87_RS04235 0.67 -0.1 886,156 + ABZR87_RS04235 0.68 +0.5 886,156 + ABZR87_RS04235 0.68 -0.5 886,156 + ABZR87_RS04235 0.68 -0.5 886,156 + ABZR87_RS04235 0.68 +0.0 886,299 + ABZR87_RS04235 0.74 +0.3 886,299 + ABZR87_RS04235 0.74 -0.2 886,300 - ABZR87_RS04235 0.74 +1.2 886,300 - ABZR87_RS04235 0.74 -1.7 886,366 - ABZR87_RS04235 0.77 -0.1 886,366 - ABZR87_RS04235 0.77 -0.3 886,366 - ABZR87_RS04235 0.77 -0.6 886,402 + ABZR87_RS04235 0.79 +0.7 886,402 + ABZR87_RS04235 0.79 +1.6 886,403 - ABZR87_RS04235 0.79 +0.5 886,443 + ABZR87_RS04235 0.81 +0.0 886,443 + ABZR87_RS04235 0.81 -0.2 886,444 - ABZR87_RS04235 0.81 +0.6 886,659 + -0.2 886,660 - +0.1 886,660 - -0.2 886,660 - +0.7 886,660 - -0.0 886,824 + -1.4 886,903 - -2.0 886,938 + +0.7 886,938 + -0.3 886,938 + -0.5 886,971 - +1.6 886,971 - -0.4 886,971 - +0.5 886,971 - -0.5 887,068 + ABZR87_RS04240 0.26 -0.5 887,069 - ABZR87_RS04240 0.26 -1.0 887,292 + +0.5 887,293 - +0.4 887,293 - +0.8 887,293 - -0.7 887,293 - -0.7 887,416 - ABZR87_RS04245 0.17 +2.0 887,416 - ABZR87_RS04245 0.17 -1.2 887,416 - ABZR87_RS04245 0.17 +0.6 887,416 - ABZR87_RS04245 0.17 -1.9 887,416 - ABZR87_RS04245 0.17 +0.4 887,416 - ABZR87_RS04245 0.17 +0.5 887,416 - ABZR87_RS04245 0.17 +0.8 887,416 - ABZR87_RS04245 0.17 +0.6 887,457 + ABZR87_RS04245 0.23 -0.3 887,457 + ABZR87_RS04245 0.23 +1.0 887,457 + ABZR87_RS04245 0.23 +0.6 887,458 - ABZR87_RS04245 0.23 +2.0 887,458 - ABZR87_RS04245 0.23 -0.3 887,458 - ABZR87_RS04245 0.23 +0.4 887,592 + ABZR87_RS04245 0.41 +1.1 887,592 + ABZR87_RS04245 0.41 +0.0 887,592 + ABZR87_RS04245 0.41 -0.4 887,592 + ABZR87_RS04245 0.41 +1.0 887,592 + ABZR87_RS04245 0.41 -0.5 887,592 + ABZR87_RS04245 0.41 +0.2 887,592 + ABZR87_RS04245 0.41 +0.5 887,593 - ABZR87_RS04245 0.41 +0.2 887,593 - ABZR87_RS04245 0.41 -0.5 887,593 - ABZR87_RS04245 0.41 +0.1 887,593 - ABZR87_RS04245 0.41 +0.7 887,593 - ABZR87_RS04245 0.41 -0.9 887,593 - ABZR87_RS04245 0.41 +0.3 887,593 - ABZR87_RS04245 0.41 -0.9 887,593 - ABZR87_RS04245 0.41 -0.6 887,593 - ABZR87_RS04245 0.41 +0.3 887,593 - ABZR87_RS04245 0.41 +0.2 887,593 - ABZR87_RS04245 0.41 +2.6 887,593 - ABZR87_RS04245 0.41 +0.4 887,613 + ABZR87_RS04245 0.44 -0.2 887,613 + ABZR87_RS04245 0.44 +0.4 887,613 + ABZR87_RS04245 0.44 +1.6 887,613 + ABZR87_RS04245 0.44 +0.5 887,613 + ABZR87_RS04245 0.44 +1.1 887,613 + ABZR87_RS04245 0.44 +0.3 887,613 + ABZR87_RS04245 0.44 -0.2 887,613 + ABZR87_RS04245 0.44 +1.0 887,614 - ABZR87_RS04245 0.44 -0.5 887,614 - ABZR87_RS04245 0.44 +0.3 887,614 - ABZR87_RS04245 0.44 +0.1 887,646 + ABZR87_RS04245 0.49 +0.9 887,646 + ABZR87_RS04245 0.49 +0.0 887,646 + ABZR87_RS04245 0.49 +0.2 887,646 + ABZR87_RS04245 0.49 -0.0 887,647 - ABZR87_RS04245 0.49 -0.9 887,647 - ABZR87_RS04245 0.49 -0.7 887,647 - ABZR87_RS04245 0.49 +0.8 887,647 - ABZR87_RS04245 0.49 +0.6 887,647 - ABZR87_RS04245 0.49 +0.8 887,647 - ABZR87_RS04245 0.49 +0.3 887,700 + ABZR87_RS04245 0.56 -1.0 887,701 - ABZR87_RS04245 0.56 +1.1 887,784 + ABZR87_RS04245 0.68 +0.0 887,791 + ABZR87_RS04245 0.69 +0.2 887,791 + ABZR87_RS04245 0.69 -0.4 887,792 - ABZR87_RS04245 0.69 -0.0 887,792 - ABZR87_RS04245 0.69 +0.9 887,792 - ABZR87_RS04245 0.69 -0.8 887,792 - ABZR87_RS04245 0.69 +1.1 887,902 + ABZR87_RS04245 0.84 -0.0 887,902 + ABZR87_RS04245 0.84 +0.0 887,902 + ABZR87_RS04245 0.84 +0.2 887,902 + ABZR87_RS04245 0.84 -0.3 887,903 - ABZR87_RS04245 0.84 +0.0 887,903 - ABZR87_RS04245 0.84 -1.3 887,903 - ABZR87_RS04245 0.84 -0.6 887,903 - ABZR87_RS04245 0.84 +0.4 887,903 - ABZR87_RS04245 0.84 -0.2 887,903 - ABZR87_RS04245 0.84 +0.3 887,903 - ABZR87_RS04245 0.84 -0.4 888,010 + -2.2 888,010 + +0.1 888,025 + +0.4 888,025 + +0.0 888,025 + +0.1 888,025 + -1.2 888,025 + -0.2 888,025 + +1.0 888,025 + +0.3 888,025 + +0.0 888,025 + -0.5 888,025 + -0.7 888,025 + -0.7 888,025 + +0.3 888,025 + -0.7 888,025 + +0.2 888,025 + -0.5 888,026 - +0.5 888,026 - +0.4 888,026 - -0.1 888,026 - -1.6 888,026 - +0.4 888,026 - +0.1 888,026 - +0.5 888,026 - -1.6 888,026 - +0.3 888,026 - -0.4 888,085 + -0.2 888,085 + +0.3 888,085 + +0.0 888,085 + -0.2 888,085 + +0.0 888,086 - -0.1 888,086 - -0.1 888,117 + +0.9 888,139 + +0.1 888,139 + +0.0 888,139 + -0.4 888,139 + +0.4 888,139 + -0.4 888,139 + +0.3 888,139 + -0.3 888,139 + -0.2 888,139 + -0.1 888,139 + +0.5 888,139 + +0.8 888,139 + -0.2 888,139 + -0.4 888,140 - -0.1 888,140 - +1.2 888,140 - -0.7 888,140 - -0.5 888,140 - +0.1 888,167 + +0.2 888,168 - -0.7 888,168 - +0.5 888,168 - -0.5 888,168 - -0.2
Or see this region's nucleotide sequence