Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02220

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02210 and ABZR87_RS02215 are separated by 31 nucleotidesABZR87_RS02215 and ABZR87_RS02220 are separated by 411 nucleotidesABZR87_RS02220 and ABZR87_RS02225 are separated by 312 nucleotides ABZR87_RS02210: ABZR87_RS02210 - lytic transglycosylase domain-containing protein, at 473,879 to 474,352 _RS02210 ABZR87_RS02215: ABZR87_RS02215 - flagellar protein FliT, at 474,384 to 474,761 _RS02215 ABZR87_RS02220: ABZR87_RS02220 - redox-regulated ATPase YchF, at 475,173 to 476,267 _RS02220 ABZR87_RS02225: ABZR87_RS02225 - ATP-binding protein, at 476,580 to 478,868 _RS02225 Position (kb) 475 476 477Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 474.260 kb on + strand, within ABZR87_RS02210at 474.261 kb on - strand, within ABZR87_RS02210at 474.261 kb on - strand, within ABZR87_RS02210at 474.293 kb on + strand, within ABZR87_RS02210at 474.293 kb on + strand, within ABZR87_RS02210at 474.294 kb on - strand, within ABZR87_RS02210at 474.294 kb on - strand, within ABZR87_RS02210at 474.294 kb on - strand, within ABZR87_RS02210at 474.388 kb on + strandat 474.388 kb on + strandat 474.388 kb on + strandat 474.388 kb on + strandat 474.389 kb on - strandat 474.389 kb on - strandat 474.389 kb on - strandat 474.389 kb on - strandat 474.391 kb on + strandat 474.391 kb on + strandat 474.391 kb on + strandat 474.392 kb on - strandat 474.392 kb on - strandat 474.392 kb on - strandat 474.392 kb on - strandat 474.406 kb on + strandat 474.406 kb on + strandat 474.688 kb on + strand, within ABZR87_RS02215at 474.688 kb on + strand, within ABZR87_RS02215at 474.689 kb on - strand, within ABZR87_RS02215at 474.689 kb on - strand, within ABZR87_RS02215at 474.722 kb on + strand, within ABZR87_RS02215at 474.722 kb on + strand, within ABZR87_RS02215at 474.723 kb on - strand, within ABZR87_RS02215at 474.723 kb on - strand, within ABZR87_RS02215at 474.723 kb on - strand, within ABZR87_RS02215at 474.809 kb on + strandat 474.809 kb on - strandat 474.810 kb on - strandat 474.810 kb on - strandat 474.810 kb on - strandat 474.954 kb on + strandat 474.954 kb on + strandat 474.955 kb on - strandat 474.969 kb on + strandat 474.970 kb on - strandat 474.970 kb on - strandat 474.977 kb on - strandat 475.072 kb on - strandat 475.214 kb on + strandat 475.214 kb on + strandat 475.215 kb on - strandat 475.266 kb on + strandat 475.267 kb on - strandat 475.267 kb on - strandat 475.586 kb on + strand, within ABZR87_RS02220at 475.587 kb on - strand, within ABZR87_RS02220at 475.611 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.785 kb on + strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.786 kb on - strand, within ABZR87_RS02220at 475.848 kb on + strand, within ABZR87_RS02220at 475.848 kb on + strand, within ABZR87_RS02220at 475.848 kb on + strand, within ABZR87_RS02220at 475.848 kb on + strand, within ABZR87_RS02220at 475.848 kb on + strand, within ABZR87_RS02220at 475.848 kb on + strand, within ABZR87_RS02220at 475.848 kb on + strand, within ABZR87_RS02220at 475.848 kb on + strand, within ABZR87_RS02220at 475.849 kb on - strand, within ABZR87_RS02220at 475.849 kb on - strand, within ABZR87_RS02220at 475.849 kb on - strand, within ABZR87_RS02220at 475.849 kb on - strand, within ABZR87_RS02220at 475.849 kb on - strand, within ABZR87_RS02220at 475.849 kb on - strand, within ABZR87_RS02220at 476.019 kb on + strand, within ABZR87_RS02220at 476.019 kb on + strand, within ABZR87_RS02220at 476.019 kb on + strand, within ABZR87_RS02220at 476.019 kb on + strand, within ABZR87_RS02220at 476.019 kb on + strand, within ABZR87_RS02220at 476.020 kb on - strand, within ABZR87_RS02220at 476.020 kb on - strand, within ABZR87_RS02220at 476.020 kb on - strand, within ABZR87_RS02220at 476.020 kb on - strand, within ABZR87_RS02220at 476.020 kb on - strand, within ABZR87_RS02220at 476.020 kb on - strand, within ABZR87_RS02220at 476.040 kb on + strand, within ABZR87_RS02220at 476.145 kb on + strand, within ABZR87_RS02220at 476.163 kb on + strandat 476.163 kb on + strandat 476.164 kb on - strandat 476.164 kb on - strandat 476.220 kb on + strandat 476.220 kb on + strandat 476.220 kb on + strandat 476.221 kb on - strandat 476.221 kb on - strandat 476.221 kb on - strandat 476.221 kb on - strandat 476.221 kb on - strandat 476.221 kb on - strandat 476.221 kb on - strandat 476.350 kb on + strandat 476.350 kb on + strandat 476.350 kb on + strandat 476.351 kb on - strandat 476.351 kb on - strandat 476.351 kb on - strandat 476.351 kb on - strandat 476.468 kb on + strandat 476.482 kb on + strandat 476.834 kb on + strand, within ABZR87_RS02225at 476.834 kb on + strand, within ABZR87_RS02225at 476.834 kb on + strand, within ABZR87_RS02225at 476.834 kb on + strand, within ABZR87_RS02225at 476.834 kb on + strand, within ABZR87_RS02225at 476.835 kb on - strand, within ABZR87_RS02225at 476.835 kb on - strand, within ABZR87_RS02225at 476.835 kb on - strand, within ABZR87_RS02225at 476.835 kb on - strand, within ABZR87_RS02225at 476.856 kb on + strand, within ABZR87_RS02225at 476.856 kb on + strand, within ABZR87_RS02225at 476.857 kb on - strand, within ABZR87_RS02225at 476.857 kb on - strand, within ABZR87_RS02225at 476.858 kb on + strand, within ABZR87_RS02225at 476.858 kb on + strand, within ABZR87_RS02225at 476.859 kb on - strand, within ABZR87_RS02225at 476.982 kb on + strand, within ABZR87_RS02225at 477.100 kb on - strand, within ABZR87_RS02225at 477.100 kb on - strand, within ABZR87_RS02225at 477.156 kb on + strand, within ABZR87_RS02225at 477.156 kb on + strand, within ABZR87_RS02225at 477.156 kb on + strand, within ABZR87_RS02225at 477.156 kb on + strand, within ABZR87_RS02225at 477.157 kb on - strand, within ABZR87_RS02225at 477.157 kb on - strand, within ABZR87_RS02225at 477.157 kb on - strand, within ABZR87_RS02225at 477.157 kb on - strand, within ABZR87_RS02225at 477.157 kb on - strand, within ABZR87_RS02225at 477.218 kb on + strand, within ABZR87_RS02225at 477.219 kb on + strand, within ABZR87_RS02225at 477.219 kb on + strand, within ABZR87_RS02225at 477.220 kb on - strand, within ABZR87_RS02225at 477.220 kb on - strand, within ABZR87_RS02225at 477.221 kb on + strand, within ABZR87_RS02225at 477.221 kb on + strand, within ABZR87_RS02225at 477.222 kb on - strand, within ABZR87_RS02225at 477.222 kb on - strand, within ABZR87_RS02225

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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474,260 + ABZR87_RS02210 0.80 -0.1
474,261 - ABZR87_RS02210 0.81 +1.6
474,261 - ABZR87_RS02210 0.81 +0.1
474,293 + ABZR87_RS02210 0.87 +0.2
474,293 + ABZR87_RS02210 0.87 -1.3
474,294 - ABZR87_RS02210 0.88 -0.4
474,294 - ABZR87_RS02210 0.88 -0.4
474,294 - ABZR87_RS02210 0.88 -0.9
474,388 + +1.0
474,388 + -0.4
474,388 + -0.9
474,388 + +0.7
474,389 - +0.1
474,389 - -0.4
474,389 - +0.1
474,389 - -0.3
474,391 + -0.8
474,391 + -0.6
474,391 + -0.4
474,392 - -0.9
474,392 - +1.1
474,392 - +1.3
474,392 - -0.1
474,406 + -0.4
474,406 + +0.2
474,688 + ABZR87_RS02215 0.80 +0.5
474,688 + ABZR87_RS02215 0.80 +0.3
474,689 - ABZR87_RS02215 0.81 +0.2
474,689 - ABZR87_RS02215 0.81 +0.0
474,722 + ABZR87_RS02215 0.89 +0.3
474,722 + ABZR87_RS02215 0.89 +0.7
474,723 - ABZR87_RS02215 0.90 -0.3
474,723 - ABZR87_RS02215 0.90 +0.4
474,723 - ABZR87_RS02215 0.90 -0.4
474,809 + -0.1
474,809 - +0.2
474,810 - -0.1
474,810 - -0.5
474,810 - +0.2
474,954 + +1.1
474,954 + +0.2
474,955 - +0.1
474,969 + -0.8
474,970 - -0.1
474,970 - -0.1
474,977 - +0.1
475,072 - -0.3
475,214 + -1.2
475,214 + -0.4
475,215 - +0.6
475,266 + -0.1
475,267 - -2.3
475,267 - -0.7
475,586 + ABZR87_RS02220 0.38 -0.5
475,587 - ABZR87_RS02220 0.38 -0.7
475,611 + ABZR87_RS02220 0.40 -3.5
475,785 + ABZR87_RS02220 0.56 -0.7
475,785 + ABZR87_RS02220 0.56 -0.8
475,785 + ABZR87_RS02220 0.56 +0.2
475,785 + ABZR87_RS02220 0.56 +0.5
475,785 + ABZR87_RS02220 0.56 -0.8
475,785 + ABZR87_RS02220 0.56 -0.4
475,785 + ABZR87_RS02220 0.56 -2.4
475,785 + ABZR87_RS02220 0.56 -0.6
475,785 + ABZR87_RS02220 0.56 -0.5
475,785 + ABZR87_RS02220 0.56 +0.3
475,785 + ABZR87_RS02220 0.56 -1.3
475,785 + ABZR87_RS02220 0.56 +0.3
475,786 - ABZR87_RS02220 0.56 -1.4
475,786 - ABZR87_RS02220 0.56 -0.4
475,786 - ABZR87_RS02220 0.56 -1.3
475,786 - ABZR87_RS02220 0.56 -2.1
475,786 - ABZR87_RS02220 0.56 +0.4
475,786 - ABZR87_RS02220 0.56 -0.5
475,786 - ABZR87_RS02220 0.56 -0.4
475,786 - ABZR87_RS02220 0.56 -0.5
475,786 - ABZR87_RS02220 0.56 -0.3
475,786 - ABZR87_RS02220 0.56 +1.1
475,786 - ABZR87_RS02220 0.56 -1.8
475,786 - ABZR87_RS02220 0.56 -0.9
475,786 - ABZR87_RS02220 0.56 -2.1
475,848 + ABZR87_RS02220 0.62 -0.5
475,848 + ABZR87_RS02220 0.62 -0.7
475,848 + ABZR87_RS02220 0.62 -0.4
475,848 + ABZR87_RS02220 0.62 +0.2
475,848 + ABZR87_RS02220 0.62 +0.5
475,848 + ABZR87_RS02220 0.62 -0.0
475,848 + ABZR87_RS02220 0.62 -0.3
475,848 + ABZR87_RS02220 0.62 +0.6
475,849 - ABZR87_RS02220 0.62 -2.3
475,849 - ABZR87_RS02220 0.62 -1.8
475,849 - ABZR87_RS02220 0.62 -1.4
475,849 - ABZR87_RS02220 0.62 +0.5
475,849 - ABZR87_RS02220 0.62 -0.8
475,849 - ABZR87_RS02220 0.62 -0.9
476,019 + ABZR87_RS02220 0.77 -1.2
476,019 + ABZR87_RS02220 0.77 -1.0
476,019 + ABZR87_RS02220 0.77 +1.6
476,019 + ABZR87_RS02220 0.77 +1.6
476,019 + ABZR87_RS02220 0.77 +0.3
476,020 - ABZR87_RS02220 0.77 -0.2
476,020 - ABZR87_RS02220 0.77 +0.1
476,020 - ABZR87_RS02220 0.77 -1.0
476,020 - ABZR87_RS02220 0.77 -0.9
476,020 - ABZR87_RS02220 0.77 -1.3
476,020 - ABZR87_RS02220 0.77 -0.7
476,040 + ABZR87_RS02220 0.79 -1.1
476,145 + ABZR87_RS02220 0.89 -1.7
476,163 + +0.2
476,163 + -0.6
476,164 - -0.6
476,164 - +0.1
476,220 + -1.8
476,220 + -1.1
476,220 + -1.5
476,221 - -0.8
476,221 - -1.1
476,221 - -0.2
476,221 - -0.6
476,221 - +1.2
476,221 - -1.2
476,221 - -0.5
476,350 + -0.4
476,350 + +0.1
476,350 + -1.0
476,351 - +0.2
476,351 - +1.3
476,351 - -0.1
476,351 - -0.7
476,468 + -0.9
476,482 + +0.2
476,834 + ABZR87_RS02225 0.11 -0.8
476,834 + ABZR87_RS02225 0.11 +0.1
476,834 + ABZR87_RS02225 0.11 +0.1
476,834 + ABZR87_RS02225 0.11 -0.2
476,834 + ABZR87_RS02225 0.11 -1.1
476,835 - ABZR87_RS02225 0.11 +0.2
476,835 - ABZR87_RS02225 0.11 +0.4
476,835 - ABZR87_RS02225 0.11 +0.5
476,835 - ABZR87_RS02225 0.11 -1.1
476,856 + ABZR87_RS02225 0.12 -1.1
476,856 + ABZR87_RS02225 0.12 -0.2
476,857 - ABZR87_RS02225 0.12 -0.1
476,857 - ABZR87_RS02225 0.12 -0.4
476,858 + ABZR87_RS02225 0.12 +0.1
476,858 + ABZR87_RS02225 0.12 +0.2
476,859 - ABZR87_RS02225 0.12 +0.4
476,982 + ABZR87_RS02225 0.18 +0.2
477,100 - ABZR87_RS02225 0.23 -0.9
477,100 - ABZR87_RS02225 0.23 -1.4
477,156 + ABZR87_RS02225 0.25 -0.1
477,156 + ABZR87_RS02225 0.25 +0.8
477,156 + ABZR87_RS02225 0.25 -0.1
477,156 + ABZR87_RS02225 0.25 +0.2
477,157 - ABZR87_RS02225 0.25 -0.8
477,157 - ABZR87_RS02225 0.25 -0.2
477,157 - ABZR87_RS02225 0.25 -0.1
477,157 - ABZR87_RS02225 0.25 -0.2
477,157 - ABZR87_RS02225 0.25 +0.9
477,218 + ABZR87_RS02225 0.28 -0.3
477,219 + ABZR87_RS02225 0.28 -0.1
477,219 + ABZR87_RS02225 0.28 -0.6
477,220 - ABZR87_RS02225 0.28 -1.0
477,220 - ABZR87_RS02225 0.28 -0.2
477,221 + ABZR87_RS02225 0.28 -0.9
477,221 + ABZR87_RS02225 0.28 +2.2
477,222 - ABZR87_RS02225 0.28 -0.6
477,222 - ABZR87_RS02225 0.28 -1.3

Or see this region's nucleotide sequence