Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01830 and ABZR87_RS01835 are separated by 26 nucleotides ABZR87_RS01835 and ABZR87_RS01840 are separated by 171 nucleotides ABZR87_RS01840 and ABZR87_RS01845 are separated by 259 nucleotides
ABZR87_RS01830: ABZR87_RS01830 - octaprenyl diphosphate synthase, at 388,334 to 389,263
_RS01830
ABZR87_RS01835: ABZR87_RS01835 - tRNA-Pro, at 389,290 to 389,366
_RS01835
ABZR87_RS01840: ABZR87_RS01840 - HlyC/CorC family transporter, at 389,538 to 390,812
_RS01840
ABZR87_RS01845: ABZR87_RS01845 - type IV-A pilus assembly ATPase PilB, at 391,072 to 392,799
_RS01845
Position (kb) 389
390
391 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 389.454 kb on + strand at 389.454 kb on + strand at 389.454 kb on + strand at 389.454 kb on + strand at 389.455 kb on - strand at 389.455 kb on - strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.503 kb on + strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.504 kb on - strand at 389.505 kb on + strand at 389.506 kb on - strand at 389.506 kb on - strand at 389.506 kb on - strand at 389.674 kb on + strand, within ABZR87_RS01840 at 389.674 kb on + strand, within ABZR87_RS01840 at 389.674 kb on + strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.675 kb on - strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.690 kb on + strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.691 kb on - strand, within ABZR87_RS01840 at 389.800 kb on - strand, within ABZR87_RS01840 at 389.800 kb on - strand, within ABZR87_RS01840 at 389.800 kb on - strand, within ABZR87_RS01840 at 389.855 kb on - strand, within ABZR87_RS01840 at 389.855 kb on - strand, within ABZR87_RS01840 at 389.855 kb on - strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.023 kb on + strand, within ABZR87_RS01840 at 390.024 kb on - strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.243 kb on + strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.244 kb on - strand, within ABZR87_RS01840 at 390.341 kb on + strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.342 kb on - strand, within ABZR87_RS01840 at 390.379 kb on - strand, within ABZR87_RS01840 at 390.379 kb on - strand, within ABZR87_RS01840 at 390.379 kb on - strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.415 kb on + strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.416 kb on - strand, within ABZR87_RS01840 at 390.420 kb on + strand, within ABZR87_RS01840 at 390.420 kb on + strand, within ABZR87_RS01840 at 390.421 kb on - strand, within ABZR87_RS01840 at 390.421 kb on - strand, within ABZR87_RS01840 at 390.465 kb on + strand, within ABZR87_RS01840 at 390.465 kb on + strand, within ABZR87_RS01840 at 390.466 kb on - strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.579 kb on + strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.580 kb on - strand, within ABZR87_RS01840 at 390.740 kb on + strand at 390.775 kb on + strand at 390.806 kb on + strand at 390.806 kb on + strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.807 kb on - strand at 390.861 kb on - strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.979 kb on + strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 390.980 kb on - strand at 391.091 kb on + strand at 391.092 kb on - strand at 391.122 kb on - strand at 391.122 kb on - strand at 391.234 kb on + strand at 391.234 kb on + strand at 391.235 kb on - strand at 391.235 kb on - strand at 391.264 kb on + strand, within ABZR87_RS01845 at 391.264 kb on + strand, within ABZR87_RS01845 at 391.265 kb on - strand, within ABZR87_RS01845 at 391.265 kb on - strand, within ABZR87_RS01845 at 391.265 kb on - strand, within ABZR87_RS01845 at 391.540 kb on + strand, within ABZR87_RS01845 at 391.541 kb on - strand, within ABZR87_RS01845 at 391.541 kb on - strand, within ABZR87_RS01845 at 391.629 kb on + strand, within ABZR87_RS01845 at 391.687 kb on + strand, within ABZR87_RS01845 at 391.687 kb on + strand, within ABZR87_RS01845
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 389,454 + -0.1 389,454 + -0.2 389,454 + +0.5 389,454 + +2.6 389,455 - +0.6 389,455 - -1.6 389,503 + -0.7 389,503 + -0.1 389,503 + +0.3 389,503 + -0.5 389,503 + -1.9 389,503 + -0.2 389,503 + +0.4 389,503 + +0.7 389,503 + +0.0 389,503 + -0.4 389,504 - +0.2 389,504 - -0.2 389,504 - -0.6 389,504 - +0.4 389,504 - +0.2 389,504 - -0.6 389,505 + -1.1 389,506 - -0.5 389,506 - +1.2 389,506 - +0.0 389,674 + ABZR87_RS01840 0.11 -0.3 389,674 + ABZR87_RS01840 0.11 +0.3 389,674 + ABZR87_RS01840 0.11 +0.2 389,675 - ABZR87_RS01840 0.11 -0.4 389,675 - ABZR87_RS01840 0.11 -0.2 389,675 - ABZR87_RS01840 0.11 +0.1 389,675 - ABZR87_RS01840 0.11 +0.3 389,690 + ABZR87_RS01840 0.12 +0.2 389,690 + ABZR87_RS01840 0.12 -1.2 389,690 + ABZR87_RS01840 0.12 +0.8 389,690 + ABZR87_RS01840 0.12 +0.1 389,690 + ABZR87_RS01840 0.12 -0.4 389,691 - ABZR87_RS01840 0.12 +0.9 389,691 - ABZR87_RS01840 0.12 +0.3 389,691 - ABZR87_RS01840 0.12 +0.4 389,691 - ABZR87_RS01840 0.12 -1.0 389,691 - ABZR87_RS01840 0.12 -0.4 389,800 - ABZR87_RS01840 0.21 +0.1 389,800 - ABZR87_RS01840 0.21 +0.3 389,800 - ABZR87_RS01840 0.21 -0.5 389,855 - ABZR87_RS01840 0.25 +1.6 389,855 - ABZR87_RS01840 0.25 +0.1 389,855 - ABZR87_RS01840 0.25 +0.7 390,023 + ABZR87_RS01840 0.38 -0.5 390,023 + ABZR87_RS01840 0.38 +0.5 390,023 + ABZR87_RS01840 0.38 -0.2 390,023 + ABZR87_RS01840 0.38 -2.1 390,024 - ABZR87_RS01840 0.38 -0.2 390,243 + ABZR87_RS01840 0.55 +0.7 390,243 + ABZR87_RS01840 0.55 +0.3 390,243 + ABZR87_RS01840 0.55 +2.1 390,243 + ABZR87_RS01840 0.55 -1.5 390,244 - ABZR87_RS01840 0.55 -0.1 390,244 - ABZR87_RS01840 0.55 +1.4 390,244 - ABZR87_RS01840 0.55 +0.1 390,244 - ABZR87_RS01840 0.55 +0.1 390,341 + ABZR87_RS01840 0.63 -1.0 390,342 - ABZR87_RS01840 0.63 +0.6 390,342 - ABZR87_RS01840 0.63 +0.6 390,342 - ABZR87_RS01840 0.63 +0.7 390,342 - ABZR87_RS01840 0.63 +0.3 390,342 - ABZR87_RS01840 0.63 -0.0 390,379 - ABZR87_RS01840 0.66 -0.2 390,379 - ABZR87_RS01840 0.66 +0.5 390,379 - ABZR87_RS01840 0.66 +0.2 390,415 + ABZR87_RS01840 0.69 -0.7 390,415 + ABZR87_RS01840 0.69 -0.4 390,415 + ABZR87_RS01840 0.69 +0.1 390,415 + ABZR87_RS01840 0.69 -0.4 390,416 - ABZR87_RS01840 0.69 -0.4 390,416 - ABZR87_RS01840 0.69 -0.0 390,416 - ABZR87_RS01840 0.69 -0.4 390,416 - ABZR87_RS01840 0.69 +0.2 390,416 - ABZR87_RS01840 0.69 -0.4 390,416 - ABZR87_RS01840 0.69 -0.1 390,416 - ABZR87_RS01840 0.69 -0.0 390,416 - ABZR87_RS01840 0.69 +0.9 390,416 - ABZR87_RS01840 0.69 +0.6 390,420 + ABZR87_RS01840 0.69 -0.3 390,420 + ABZR87_RS01840 0.69 +1.4 390,421 - ABZR87_RS01840 0.69 -0.7 390,421 - ABZR87_RS01840 0.69 -0.8 390,465 + ABZR87_RS01840 0.73 +1.2 390,465 + ABZR87_RS01840 0.73 -0.6 390,466 - ABZR87_RS01840 0.73 +0.7 390,579 + ABZR87_RS01840 0.82 -0.6 390,579 + ABZR87_RS01840 0.82 -0.2 390,579 + ABZR87_RS01840 0.82 +0.7 390,579 + ABZR87_RS01840 0.82 -0.5 390,579 + ABZR87_RS01840 0.82 -0.7 390,579 + ABZR87_RS01840 0.82 +0.4 390,579 + ABZR87_RS01840 0.82 -0.3 390,579 + ABZR87_RS01840 0.82 -0.4 390,579 + ABZR87_RS01840 0.82 -0.1 390,579 + ABZR87_RS01840 0.82 -1.2 390,580 - ABZR87_RS01840 0.82 -0.7 390,580 - ABZR87_RS01840 0.82 +0.7 390,580 - ABZR87_RS01840 0.82 +0.2 390,580 - ABZR87_RS01840 0.82 +0.4 390,740 + -0.5 390,775 + +0.3 390,806 + -0.3 390,806 + +0.1 390,807 - +0.5 390,807 - -1.2 390,807 - +0.8 390,807 - +1.2 390,807 - +0.1 390,807 - +0.2 390,807 - +1.6 390,807 - +0.1 390,861 - +1.1 390,979 + -0.6 390,979 + -0.2 390,979 + +0.1 390,979 + -0.4 390,979 + +0.6 390,979 + +0.2 390,979 + +0.3 390,979 + -0.4 390,979 + +0.8 390,979 + +0.1 390,979 + -0.2 390,979 + +1.3 390,979 + -0.1 390,979 + +0.1 390,979 + -0.3 390,979 + -2.2 390,980 - +3.0 390,980 - +0.9 390,980 - +1.2 390,980 - +1.9 390,980 - +2.3 390,980 - +2.1 390,980 - +1.7 390,980 - +2.3 390,980 - +2.8 390,980 - +2.2 390,980 - +2.0 390,980 - +2.1 390,980 - +1.0 390,980 - +2.0 390,980 - +2.2 391,091 + +2.3 391,092 - +2.3 391,122 - +1.1 391,122 - +2.5 391,234 + +1.9 391,234 + +5.0 391,235 - +2.0 391,235 - +0.4 391,264 + ABZR87_RS01845 0.11 +2.1 391,264 + ABZR87_RS01845 0.11 +2.7 391,265 - ABZR87_RS01845 0.11 +1.2 391,265 - ABZR87_RS01845 0.11 +1.0 391,265 - ABZR87_RS01845 0.11 +2.2 391,540 + ABZR87_RS01845 0.27 +2.3 391,541 - ABZR87_RS01845 0.27 +2.9 391,541 - ABZR87_RS01845 0.27 +2.2 391,629 + ABZR87_RS01845 0.32 +3.1 391,687 + ABZR87_RS01845 0.36 +2.2 391,687 + ABZR87_RS01845 0.36 +1.8
Or see this region's nucleotide sequence