Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01740

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01730 and ABZR87_RS01735 are separated by 30 nucleotidesABZR87_RS01735 and ABZR87_RS01740 are separated by 36 nucleotidesABZR87_RS01740 and ABZR87_RS01745 are separated by 563 nucleotides ABZR87_RS01730: ABZR87_RS01730 - alkaline phosphatase family protein, at 366,428 to 368,458 _RS01730 ABZR87_RS01735: ABZR87_RS01735 - hypothetical protein, at 368,489 to 368,689 _RS01735 ABZR87_RS01740: ABZR87_RS01740 - phosphocholine-specific phospholipase C, at 368,726 to 370,885 _RS01740 ABZR87_RS01745: ABZR87_RS01745 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 371,449 to 372,045 _RS01745 Position (kb) 368 369 370 371Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 367.754 kb on + strand, within ABZR87_RS01730at 367.754 kb on + strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.757 kb on + strand, within ABZR87_RS01730at 367.757 kb on + strand, within ABZR87_RS01730at 367.757 kb on + strand, within ABZR87_RS01730at 367.758 kb on - strand, within ABZR87_RS01730at 367.758 kb on - strand, within ABZR87_RS01730at 367.758 kb on - strand, within ABZR87_RS01730at 367.898 kb on + strand, within ABZR87_RS01730at 367.898 kb on + strand, within ABZR87_RS01730at 367.899 kb on - strand, within ABZR87_RS01730at 367.899 kb on - strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.151 kb on - strand, within ABZR87_RS01730at 368.151 kb on - strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.196 kb on - strand, within ABZR87_RS01730at 368.196 kb on - strand, within ABZR87_RS01730at 368.321 kb on + strandat 368.321 kb on + strandat 368.321 kb on + strandat 368.321 kb on + strandat 368.321 kb on + strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.363 kb on + strandat 368.364 kb on - strandat 368.364 kb on - strandat 368.364 kb on - strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.937 kb on - strandat 368.937 kb on - strandat 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.024 kb on - strand, within ABZR87_RS01740at 369.024 kb on - strand, within ABZR87_RS01740at 369.024 kb on - strand, within ABZR87_RS01740at 369.062 kb on + strand, within ABZR87_RS01740at 369.063 kb on - strand, within ABZR87_RS01740at 369.066 kb on - strand, within ABZR87_RS01740at 369.066 kb on - strand, within ABZR87_RS01740at 369.119 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.174 kb on - strand, within ABZR87_RS01740at 369.174 kb on - strand, within ABZR87_RS01740at 369.197 kb on + strand, within ABZR87_RS01740at 369.198 kb on - strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.263 kb on + strand, within ABZR87_RS01740at 369.264 kb on - strand, within ABZR87_RS01740at 369.264 kb on - strand, within ABZR87_RS01740at 369.396 kb on - strand, within ABZR87_RS01740at 369.396 kb on - strand, within ABZR87_RS01740at 369.396 kb on - strand, within ABZR87_RS01740at 369.411 kb on - strand, within ABZR87_RS01740at 369.564 kb on - strand, within ABZR87_RS01740at 369.707 kb on + strand, within ABZR87_RS01740at 369.707 kb on + strand, within ABZR87_RS01740at 369.708 kb on - strand, within ABZR87_RS01740at 369.708 kb on - strand, within ABZR87_RS01740at 369.708 kb on - strand, within ABZR87_RS01740at 369.879 kb on - strand, within ABZR87_RS01740at 369.929 kb on + strand, within ABZR87_RS01740at 369.950 kb on + strand, within ABZR87_RS01740at 369.950 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.978 kb on - strand, within ABZR87_RS01740at 369.978 kb on - strand, within ABZR87_RS01740at 369.978 kb on - strand, within ABZR87_RS01740at 370.094 kb on + strand, within ABZR87_RS01740at 370.403 kb on + strand, within ABZR87_RS01740at 370.403 kb on + strand, within ABZR87_RS01740at 370.440 kb on - strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.610 kb on + strand, within ABZR87_RS01740at 370.611 kb on - strand, within ABZR87_RS01740at 370.634 kb on + strand, within ABZR87_RS01740at 370.634 kb on + strand, within ABZR87_RS01740at 370.635 kb on - strand, within ABZR87_RS01740at 370.635 kb on - strand, within ABZR87_RS01740at 370.635 kb on - strand, within ABZR87_RS01740at 370.781 kb on + strandat 370.782 kb on - strandat 370.782 kb on - strandat 370.889 kb on - strandat 370.889 kb on - strandat 370.901 kb on + strandat 370.901 kb on + strandat 371.063 kb on + strandat 371.064 kb on - strandat 371.275 kb on - strandat 371.275 kb on - strandat 371.316 kb on + strandat 371.465 kb on + strandat 371.588 kb on + strand, within ABZR87_RS01745at 371.630 kb on + strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.832 kb on - strand, within ABZR87_RS01745at 371.832 kb on - strand, within ABZR87_RS01745

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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367,754 + ABZR87_RS01730 0.65 +0.1
367,754 + ABZR87_RS01730 0.65 +0.8
367,755 - ABZR87_RS01730 0.65 +1.1
367,755 - ABZR87_RS01730 0.65 +0.0
367,755 - ABZR87_RS01730 0.65 -0.6
367,755 - ABZR87_RS01730 0.65 -0.1
367,755 - ABZR87_RS01730 0.65 -1.9
367,757 + ABZR87_RS01730 0.65 +0.1
367,757 + ABZR87_RS01730 0.65 +1.6
367,757 + ABZR87_RS01730 0.65 +0.2
367,758 - ABZR87_RS01730 0.65 +0.2
367,758 - ABZR87_RS01730 0.65 +0.1
367,758 - ABZR87_RS01730 0.65 -0.2
367,898 + ABZR87_RS01730 0.72 +0.2
367,898 + ABZR87_RS01730 0.72 -2.7
367,899 - ABZR87_RS01730 0.72 -0.3
367,899 - ABZR87_RS01730 0.72 -0.2
368,021 + ABZR87_RS01730 0.78 -0.4
368,021 + ABZR87_RS01730 0.78 -1.1
368,021 + ABZR87_RS01730 0.78 +3.2
368,021 + ABZR87_RS01730 0.78 -1.2
368,021 + ABZR87_RS01730 0.78 +0.1
368,022 - ABZR87_RS01730 0.78 -0.2
368,022 - ABZR87_RS01730 0.78 +0.5
368,022 - ABZR87_RS01730 0.78 -0.5
368,022 - ABZR87_RS01730 0.78 +0.2
368,022 - ABZR87_RS01730 0.78 +0.3
368,022 - ABZR87_RS01730 0.78 -0.9
368,022 - ABZR87_RS01730 0.78 -0.1
368,022 - ABZR87_RS01730 0.78 -1.6
368,151 - ABZR87_RS01730 0.85 -0.4
368,151 - ABZR87_RS01730 0.85 -0.7
368,195 + ABZR87_RS01730 0.87 -1.5
368,195 + ABZR87_RS01730 0.87 -0.0
368,195 + ABZR87_RS01730 0.87 -0.6
368,195 + ABZR87_RS01730 0.87 -0.1
368,195 + ABZR87_RS01730 0.87 +0.0
368,195 + ABZR87_RS01730 0.87 +0.4
368,195 + ABZR87_RS01730 0.87 -1.4
368,195 + ABZR87_RS01730 0.87 +1.2
368,196 - ABZR87_RS01730 0.87 +0.1
368,196 - ABZR87_RS01730 0.87 +0.4
368,321 + -0.2
368,321 + +0.3
368,321 + +0.0
368,321 + -0.1
368,321 + -0.4
368,322 - +0.3
368,322 - -1.5
368,322 - -0.3
368,322 - +0.5
368,322 - +0.2
368,322 - -0.9
368,322 - +0.0
368,322 - +0.6
368,322 - -0.1
368,322 - +0.3
368,322 - -0.0
368,322 - +0.4
368,322 - +1.1
368,363 + +0.6
368,364 - -0.3
368,364 - +0.1
368,364 - -0.1
368,936 + +0.2
368,936 + +0.0
368,936 + -2.8
368,936 + +1.8
368,936 + +0.2
368,936 + +0.8
368,937 - -0.1
368,937 - +0.2
369,023 + ABZR87_RS01740 0.14 -1.4
369,023 + ABZR87_RS01740 0.14 +1.2
369,023 + ABZR87_RS01740 0.14 +0.3
369,023 + ABZR87_RS01740 0.14 -0.2
369,023 + ABZR87_RS01740 0.14 -0.6
369,023 + ABZR87_RS01740 0.14 +0.3
369,023 + ABZR87_RS01740 0.14 -0.9
369,023 + ABZR87_RS01740 0.14 +1.2
369,023 + ABZR87_RS01740 0.14 -0.4
369,023 + ABZR87_RS01740 0.14 -0.5
369,023 + ABZR87_RS01740 0.14 +0.1
369,023 + ABZR87_RS01740 0.14 -0.4
369,024 - ABZR87_RS01740 0.14 -0.1
369,024 - ABZR87_RS01740 0.14 +0.1
369,024 - ABZR87_RS01740 0.14 -0.3
369,062 + ABZR87_RS01740 0.16 +0.1
369,063 - ABZR87_RS01740 0.16 -0.8
369,066 - ABZR87_RS01740 0.16 -1.6
369,066 - ABZR87_RS01740 0.16 +1.1
369,119 + ABZR87_RS01740 0.18 +0.2
369,173 + ABZR87_RS01740 0.21 +0.6
369,173 + ABZR87_RS01740 0.21 +0.2
369,173 + ABZR87_RS01740 0.21 -0.4
369,173 + ABZR87_RS01740 0.21 +0.6
369,173 + ABZR87_RS01740 0.21 -0.4
369,174 - ABZR87_RS01740 0.21 -0.1
369,174 - ABZR87_RS01740 0.21 +0.2
369,197 + ABZR87_RS01740 0.22 +0.1
369,198 - ABZR87_RS01740 0.22 +0.9
369,200 + ABZR87_RS01740 0.22 -0.1
369,200 + ABZR87_RS01740 0.22 +1.1
369,200 + ABZR87_RS01740 0.22 +1.0
369,200 + ABZR87_RS01740 0.22 +0.3
369,200 + ABZR87_RS01740 0.22 +0.1
369,201 - ABZR87_RS01740 0.22 -0.2
369,201 - ABZR87_RS01740 0.22 -0.7
369,201 - ABZR87_RS01740 0.22 +0.0
369,201 - ABZR87_RS01740 0.22 -0.4
369,201 - ABZR87_RS01740 0.22 +1.1
369,201 - ABZR87_RS01740 0.22 -0.7
369,201 - ABZR87_RS01740 0.22 -3.0
369,201 - ABZR87_RS01740 0.22 -0.3
369,263 + ABZR87_RS01740 0.25 -0.4
369,264 - ABZR87_RS01740 0.25 +0.0
369,264 - ABZR87_RS01740 0.25 -0.4
369,396 - ABZR87_RS01740 0.31 +0.6
369,396 - ABZR87_RS01740 0.31 +0.4
369,396 - ABZR87_RS01740 0.31 +1.1
369,411 - ABZR87_RS01740 0.32 +0.4
369,564 - ABZR87_RS01740 0.39 -1.0
369,707 + ABZR87_RS01740 0.45 -0.7
369,707 + ABZR87_RS01740 0.45 -0.4
369,708 - ABZR87_RS01740 0.45 -0.3
369,708 - ABZR87_RS01740 0.45 +0.6
369,708 - ABZR87_RS01740 0.45 -0.1
369,879 - ABZR87_RS01740 0.53 +1.6
369,929 + ABZR87_RS01740 0.56 -0.1
369,950 + ABZR87_RS01740 0.57 -0.4
369,950 + ABZR87_RS01740 0.57 -0.9
369,977 + ABZR87_RS01740 0.58 -0.0
369,977 + ABZR87_RS01740 0.58 -1.0
369,977 + ABZR87_RS01740 0.58 +1.1
369,977 + ABZR87_RS01740 0.58 +0.5
369,977 + ABZR87_RS01740 0.58 +0.7
369,977 + ABZR87_RS01740 0.58 -0.2
369,977 + ABZR87_RS01740 0.58 -0.3
369,977 + ABZR87_RS01740 0.58 -1.0
369,978 - ABZR87_RS01740 0.58 -1.2
369,978 - ABZR87_RS01740 0.58 +1.0
369,978 - ABZR87_RS01740 0.58 -0.1
370,094 + ABZR87_RS01740 0.63 +0.4
370,403 + ABZR87_RS01740 0.78 +0.1
370,403 + ABZR87_RS01740 0.78 +0.2
370,440 - ABZR87_RS01740 0.79 +0.1
370,505 + ABZR87_RS01740 0.82 -0.1
370,505 + ABZR87_RS01740 0.82 +0.2
370,505 + ABZR87_RS01740 0.82 -0.0
370,505 + ABZR87_RS01740 0.82 +0.2
370,505 + ABZR87_RS01740 0.82 +0.5
370,505 + ABZR87_RS01740 0.82 -0.1
370,505 + ABZR87_RS01740 0.82 +0.4
370,505 + ABZR87_RS01740 0.82 -0.3
370,506 - ABZR87_RS01740 0.82 -0.1
370,506 - ABZR87_RS01740 0.82 +1.1
370,506 - ABZR87_RS01740 0.82 +0.1
370,506 - ABZR87_RS01740 0.82 -0.4
370,506 - ABZR87_RS01740 0.82 +0.1
370,506 - ABZR87_RS01740 0.82 +0.8
370,506 - ABZR87_RS01740 0.82 +0.0
370,610 + ABZR87_RS01740 0.87 -0.5
370,611 - ABZR87_RS01740 0.87 -0.7
370,634 + ABZR87_RS01740 0.88 -0.6
370,634 + ABZR87_RS01740 0.88 -1.4
370,635 - ABZR87_RS01740 0.88 +0.7
370,635 - ABZR87_RS01740 0.88 +1.0
370,635 - ABZR87_RS01740 0.88 -0.3
370,781 + -0.9
370,782 - -0.1
370,782 - -0.3
370,889 - +0.6
370,889 - -0.6
370,901 + -0.8
370,901 + +0.3
371,063 + -0.9
371,064 - -0.7
371,275 - -1.5
371,275 - -0.4
371,316 + +0.2
371,465 + +0.9
371,588 + ABZR87_RS01745 0.23 +0.7
371,630 + ABZR87_RS01745 0.30 -0.4
371,631 - ABZR87_RS01745 0.30 +1.3
371,631 - ABZR87_RS01745 0.30 +1.6
371,631 - ABZR87_RS01745 0.30 +1.4
371,631 - ABZR87_RS01745 0.30 +0.4
371,831 + ABZR87_RS01745 0.64 -1.2
371,831 + ABZR87_RS01745 0.64 -0.1
371,831 + ABZR87_RS01745 0.64 +0.8
371,832 - ABZR87_RS01745 0.64 +0.1
371,832 - ABZR87_RS01745 0.64 +0.1

Or see this region's nucleotide sequence