Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01330 and ABZR87_RS01335 overlap by 4 nucleotides ABZR87_RS01335 and ABZR87_RS01340 are separated by 287 nucleotides
ABZR87_RS01330: ABZR87_RS01330 - tRNA 2-thiouridine(34) synthase MnmA, at 277,665 to 278,777
_RS01330
ABZR87_RS01335: ABZR87_RS01335 - NUDIX hydrolase, at 278,774 to 279,268
_RS01335
ABZR87_RS01340: ABZR87_RS01340 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 279,556 to 280,695
_RS01340
Position (kb) 278
279
280 Strain fitness (log2 ratio) -1
0
1 at 278.797 kb on - strand at 278.797 kb on - strand at 278.819 kb on - strand at 278.851 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.049 kb on - strand, within ABZR87_RS01335 at 279.049 kb on - strand, within ABZR87_RS01335 at 279.049 kb on - strand, within ABZR87_RS01335 at 279.049 kb on - strand, within ABZR87_RS01335 at 279.302 kb on - strand at 279.302 kb on - strand at 279.474 kb on + strand at 279.475 kb on - strand at 279.475 kb on - strand at 279.528 kb on + strand at 279.529 kb on - strand at 279.534 kb on + strand at 279.534 kb on + strand at 279.534 kb on + strand at 279.534 kb on + strand at 279.535 kb on - strand at 279.631 kb on + strand at 279.631 kb on + strand at 279.631 kb on + strand at 279.632 kb on - strand at 279.703 kb on + strand, within ABZR87_RS01340 at 279.703 kb on + strand, within ABZR87_RS01340 at 279.703 kb on + strand, within ABZR87_RS01340 at 279.703 kb on + strand, within ABZR87_RS01340 at 279.967 kb on + strand, within ABZR87_RS01340 at 279.967 kb on + strand, within ABZR87_RS01340 at 279.969 kb on + strand, within ABZR87_RS01340 at 280.243 kb on + strand, within ABZR87_RS01340
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 278,797 - -0.5 278,797 - +0.1 278,819 - +1.2 278,851 - ABZR87_RS01335 0.16 -0.1 279,007 - ABZR87_RS01335 0.47 -0.1 279,007 - ABZR87_RS01335 0.47 -0.4 279,007 - ABZR87_RS01335 0.47 -0.5 279,007 - ABZR87_RS01335 0.47 +0.1 279,007 - ABZR87_RS01335 0.47 +0.1 279,007 - ABZR87_RS01335 0.47 -0.5 279,007 - ABZR87_RS01335 0.47 -0.3 279,049 - ABZR87_RS01335 0.56 +0.3 279,049 - ABZR87_RS01335 0.56 -0.6 279,049 - ABZR87_RS01335 0.56 -1.7 279,049 - ABZR87_RS01335 0.56 -0.7 279,302 - -0.3 279,302 - -0.7 279,474 + +0.1 279,475 - -0.6 279,475 - -0.3 279,528 + -0.1 279,529 - -0.7 279,534 + -0.0 279,534 + +0.4 279,534 + +0.3 279,534 + +1.2 279,535 - -0.3 279,631 + +0.2 279,631 + -0.7 279,631 + -0.1 279,632 - +0.5 279,703 + ABZR87_RS01340 0.13 -1.3 279,703 + ABZR87_RS01340 0.13 +0.5 279,703 + ABZR87_RS01340 0.13 +0.4 279,703 + ABZR87_RS01340 0.13 +0.1 279,967 + ABZR87_RS01340 0.36 +0.6 279,967 + ABZR87_RS01340 0.36 +0.2 279,969 + ABZR87_RS01340 0.36 -0.1 280,243 + ABZR87_RS01340 0.60 +0.2
Or see this region's nucleotide sequence