Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01200

Experiment: Ra3_0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01195 and ABZR87_RS01200 overlap by 4 nucleotidesABZR87_RS01200 and ABZR87_RS01205 overlap by 4 nucleotidesABZR87_RS01205 and ABZR87_RS01210 are separated by 8 nucleotides ABZR87_RS01195: ABZR87_RS01195 - PilW family protein, at 248,299 to 249,363 _RS01195 ABZR87_RS01200: ABZR87_RS01200 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 249,360 to 249,962 _RS01200 ABZR87_RS01205: ABZR87_RS01205 - GspH/FimT family pseudopilin, at 249,959 to 250,432 _RS01205 ABZR87_RS01210: ABZR87_RS01210 - type IV pilin protein, at 250,441 to 250,878 _RS01210 Position (kb) 249 250Strain fitness (log2 ratio) -2 -1 0 1 2at 248.360 kb on + strandat 248.360 kb on + strandat 248.361 kb on - strandat 248.405 kb on + strandat 248.405 kb on + strandat 248.405 kb on + strandat 248.405 kb on + strandat 248.405 kb on + strandat 248.406 kb on - strand, within ABZR87_RS01195at 248.406 kb on - strand, within ABZR87_RS01195at 248.406 kb on - strand, within ABZR87_RS01195at 248.416 kb on - strand, within ABZR87_RS01195at 248.516 kb on + strand, within ABZR87_RS01195at 248.533 kb on - strand, within ABZR87_RS01195at 248.570 kb on + strand, within ABZR87_RS01195at 248.570 kb on + strand, within ABZR87_RS01195at 248.609 kb on + strand, within ABZR87_RS01195at 248.672 kb on + strand, within ABZR87_RS01195at 248.741 kb on + strand, within ABZR87_RS01195at 248.741 kb on + strand, within ABZR87_RS01195at 248.741 kb on + strand, within ABZR87_RS01195at 248.742 kb on - strand, within ABZR87_RS01195at 248.873 kb on + strand, within ABZR87_RS01195at 248.996 kb on + strand, within ABZR87_RS01195at 248.996 kb on + strand, within ABZR87_RS01195at 249.002 kb on + strand, within ABZR87_RS01195at 249.002 kb on + strand, within ABZR87_RS01195at 249.002 kb on + strand, within ABZR87_RS01195at 249.002 kb on + strand, within ABZR87_RS01195at 249.003 kb on - strand, within ABZR87_RS01195at 249.003 kb on - strand, within ABZR87_RS01195at 249.003 kb on - strand, within ABZR87_RS01195at 249.003 kb on - strand, within ABZR87_RS01195at 249.161 kb on + strand, within ABZR87_RS01195at 249.161 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.227 kb on + strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.228 kb on - strand, within ABZR87_RS01195at 249.422 kb on - strand, within ABZR87_RS01200at 249.499 kb on + strand, within ABZR87_RS01200at 249.500 kb on - strand, within ABZR87_RS01200at 249.591 kb on - strand, within ABZR87_RS01200at 249.724 kb on + strand, within ABZR87_RS01200at 249.724 kb on + strand, within ABZR87_RS01200at 249.724 kb on + strand, within ABZR87_RS01200at 249.725 kb on - strand, within ABZR87_RS01200at 249.725 kb on - strand, within ABZR87_RS01200at 249.725 kb on - strand, within ABZR87_RS01200at 249.725 kb on - strand, within ABZR87_RS01200at 249.802 kb on + strand, within ABZR87_RS01200at 250.143 kb on + strand, within ABZR87_RS01205at 250.563 kb on - strand, within ABZR87_RS01210at 250.563 kb on - strand, within ABZR87_RS01210at 250.601 kb on + strand, within ABZR87_RS01210at 250.601 kb on + strand, within ABZR87_RS01210at 250.602 kb on - strand, within ABZR87_RS01210at 250.602 kb on - strand, within ABZR87_RS01210at 250.602 kb on - strand, within ABZR87_RS01210at 250.664 kb on + strand, within ABZR87_RS01210at 250.665 kb on - strand, within ABZR87_RS01210at 250.754 kb on + strand, within ABZR87_RS01210at 250.754 kb on + strand, within ABZR87_RS01210at 250.754 kb on + strand, within ABZR87_RS01210at 250.755 kb on - strand, within ABZR87_RS01210at 250.755 kb on - strand, within ABZR87_RS01210at 250.755 kb on - strand, within ABZR87_RS01210at 250.755 kb on - strand, within ABZR87_RS01210at 250.763 kb on + strand, within ABZR87_RS01210at 250.764 kb on - strand, within ABZR87_RS01210at 250.764 kb on - strand, within ABZR87_RS01210at 250.764 kb on - strand, within ABZR87_RS01210at 250.772 kb on + strand, within ABZR87_RS01210at 250.773 kb on - strand, within ABZR87_RS01210at 250.830 kb on + strand, within ABZR87_RS01210at 250.861 kb on + strandat 250.862 kb on - strandat 250.894 kb on + strandat 250.895 kb on - strandat 250.895 kb on - strandat 250.917 kb on + strandat 250.960 kb on + strandat 250.961 kb on - strandat 250.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_0.1
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248,360 + +0.1
248,360 + -0.2
248,361 - -0.6
248,405 + +1.0
248,405 + +0.3
248,405 + +0.5
248,405 + +0.5
248,405 + -0.1
248,406 - ABZR87_RS01195 0.10 -0.2
248,406 - ABZR87_RS01195 0.10 -0.6
248,406 - ABZR87_RS01195 0.10 -0.5
248,416 - ABZR87_RS01195 0.11 -1.7
248,516 + ABZR87_RS01195 0.20 +0.3
248,533 - ABZR87_RS01195 0.22 +0.0
248,570 + ABZR87_RS01195 0.25 +0.6
248,570 + ABZR87_RS01195 0.25 -1.0
248,609 + ABZR87_RS01195 0.29 -1.0
248,672 + ABZR87_RS01195 0.35 +0.4
248,741 + ABZR87_RS01195 0.42 +0.2
248,741 + ABZR87_RS01195 0.42 +0.2
248,741 + ABZR87_RS01195 0.42 -0.4
248,742 - ABZR87_RS01195 0.42 +0.8
248,873 + ABZR87_RS01195 0.54 +0.8
248,996 + ABZR87_RS01195 0.65 -0.5
248,996 + ABZR87_RS01195 0.65 +0.1
249,002 + ABZR87_RS01195 0.66 -0.0
249,002 + ABZR87_RS01195 0.66 +0.5
249,002 + ABZR87_RS01195 0.66 -0.0
249,002 + ABZR87_RS01195 0.66 +0.2
249,003 - ABZR87_RS01195 0.66 -0.8
249,003 - ABZR87_RS01195 0.66 +0.0
249,003 - ABZR87_RS01195 0.66 -0.5
249,003 - ABZR87_RS01195 0.66 -1.2
249,161 + ABZR87_RS01195 0.81 -0.4
249,161 + ABZR87_RS01195 0.81 -1.8
249,227 + ABZR87_RS01195 0.87 +0.4
249,227 + ABZR87_RS01195 0.87 +0.3
249,227 + ABZR87_RS01195 0.87 -0.7
249,227 + ABZR87_RS01195 0.87 +0.5
249,227 + ABZR87_RS01195 0.87 -0.0
249,228 - ABZR87_RS01195 0.87 -0.7
249,228 - ABZR87_RS01195 0.87 -0.2
249,228 - ABZR87_RS01195 0.87 -0.9
249,228 - ABZR87_RS01195 0.87 -1.3
249,228 - ABZR87_RS01195 0.87 +0.8
249,228 - ABZR87_RS01195 0.87 +0.1
249,422 - ABZR87_RS01200 0.10 -0.8
249,499 + ABZR87_RS01200 0.23 +0.9
249,500 - ABZR87_RS01200 0.23 +0.2
249,591 - ABZR87_RS01200 0.38 +0.3
249,724 + ABZR87_RS01200 0.60 +0.9
249,724 + ABZR87_RS01200 0.60 +1.3
249,724 + ABZR87_RS01200 0.60 +0.3
249,725 - ABZR87_RS01200 0.61 +0.2
249,725 - ABZR87_RS01200 0.61 -0.6
249,725 - ABZR87_RS01200 0.61 -0.6
249,725 - ABZR87_RS01200 0.61 -0.1
249,802 + ABZR87_RS01200 0.73 +0.2
250,143 + ABZR87_RS01205 0.39 +0.4
250,563 - ABZR87_RS01210 0.28 +0.5
250,563 - ABZR87_RS01210 0.28 +1.7
250,601 + ABZR87_RS01210 0.37 -0.3
250,601 + ABZR87_RS01210 0.37 -1.3
250,602 - ABZR87_RS01210 0.37 -0.6
250,602 - ABZR87_RS01210 0.37 +0.3
250,602 - ABZR87_RS01210 0.37 -0.3
250,664 + ABZR87_RS01210 0.51 +0.3
250,665 - ABZR87_RS01210 0.51 +1.2
250,754 + ABZR87_RS01210 0.71 +1.3
250,754 + ABZR87_RS01210 0.71 -0.4
250,754 + ABZR87_RS01210 0.71 +0.0
250,755 - ABZR87_RS01210 0.72 +0.2
250,755 - ABZR87_RS01210 0.72 +1.0
250,755 - ABZR87_RS01210 0.72 -0.3
250,755 - ABZR87_RS01210 0.72 +1.6
250,763 + ABZR87_RS01210 0.74 +0.4
250,764 - ABZR87_RS01210 0.74 +0.6
250,764 - ABZR87_RS01210 0.74 +0.9
250,764 - ABZR87_RS01210 0.74 +0.5
250,772 + ABZR87_RS01210 0.76 +0.7
250,773 - ABZR87_RS01210 0.76 +0.8
250,830 + ABZR87_RS01210 0.89 +0.0
250,861 + -0.2
250,862 - -0.1
250,894 + -0.6
250,895 - +2.0
250,895 - -1.3
250,917 + -0.2
250,960 + +0.5
250,961 - -1.7
250,961 - -1.0

Or see this region's nucleotide sequence