Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00925 and ABZR87_RS00930 are separated by 51 nucleotides ABZR87_RS00930 and ABZR87_RS00935 are separated by 11 nucleotides ABZR87_RS00935 and ABZR87_RS00940 overlap by 4 nucleotides ABZR87_RS00940 and ABZR87_RS00945 are separated by 29 nucleotides
ABZR87_RS00925: ABZR87_RS00925 - DnaA regulatory inactivator Hda, at 184,455 to 185,156
_RS00925
ABZR87_RS00930: ABZR87_RS00930 - HAD family phosphatase, at 185,208 to 185,882
_RS00930
ABZR87_RS00935: ABZR87_RS00935 - polynucleotide adenylyltransferase PcnB, at 185,894 to 187,456
_RS00935
ABZR87_RS00940: ABZR87_RS00940 - 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase, at 187,453 to 187,968
_RS00940
ABZR87_RS00945: ABZR87_RS00945 - deoxynucleoside kinase, at 187,998 to 188,642
_RS00945
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -2
-1
0
1
2 at 185.179 kb on + strand at 185.179 kb on + strand at 185.179 kb on + strand at 185.180 kb on - strand at 185.180 kb on - strand at 185.180 kb on - strand at 185.183 kb on + strand at 185.183 kb on + strand at 185.184 kb on - strand at 185.500 kb on - strand, within ABZR87_RS00930 at 185.880 kb on + strand at 185.881 kb on - strand at 185.881 kb on - strand at 185.881 kb on - strand at 185.881 kb on - strand at 186.146 kb on + strand, within ABZR87_RS00935 at 186.308 kb on + strand, within ABZR87_RS00935 at 186.309 kb on - strand, within ABZR87_RS00935 at 186.527 kb on + strand, within ABZR87_RS00935 at 186.527 kb on + strand, within ABZR87_RS00935 at 186.528 kb on - strand, within ABZR87_RS00935 at 186.528 kb on - strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.530 kb on + strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.531 kb on - strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.560 kb on + strand, within ABZR87_RS00935 at 186.561 kb on - strand, within ABZR87_RS00935 at 187.048 kb on + strand, within ABZR87_RS00935 at 187.049 kb on - strand, within ABZR87_RS00935 at 187.049 kb on - strand, within ABZR87_RS00935 at 187.211 kb on + strand, within ABZR87_RS00935 at 187.211 kb on + strand, within ABZR87_RS00935 at 187.211 kb on + strand, within ABZR87_RS00935 at 187.212 kb on - strand, within ABZR87_RS00935 at 187.468 kb on + strand at 188.142 kb on + strand, within ABZR87_RS00945 at 188.142 kb on + strand, within ABZR87_RS00945 at 188.143 kb on - strand, within ABZR87_RS00945 at 188.143 kb on - strand, within ABZR87_RS00945 at 188.160 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.322 kb on + strand, within ABZR87_RS00945 at 188.323 kb on - strand, within ABZR87_RS00945 at 188.323 kb on - strand, within ABZR87_RS00945 at 188.436 kb on + strand, within ABZR87_RS00945 at 188.436 kb on + strand, within ABZR87_RS00945 at 188.436 kb on + strand, within ABZR87_RS00945
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 185,179 + -0.4 185,179 + -0.7 185,179 + +0.5 185,180 - +0.5 185,180 - -0.3 185,180 - +1.0 185,183 + -2.2 185,183 + -0.0 185,184 - -0.0 185,500 - ABZR87_RS00930 0.43 +0.6 185,880 + +1.2 185,881 - +0.6 185,881 - +0.7 185,881 - +1.2 185,881 - +0.0 186,146 + ABZR87_RS00935 0.16 +1.1 186,308 + ABZR87_RS00935 0.26 +1.1 186,309 - ABZR87_RS00935 0.27 +1.5 186,527 + ABZR87_RS00935 0.40 +1.4 186,527 + ABZR87_RS00935 0.40 +1.2 186,528 - ABZR87_RS00935 0.41 +2.1 186,528 - ABZR87_RS00935 0.41 +2.3 186,530 + ABZR87_RS00935 0.41 +0.8 186,530 + ABZR87_RS00935 0.41 +0.9 186,530 + ABZR87_RS00935 0.41 +1.6 186,530 + ABZR87_RS00935 0.41 +1.4 186,531 - ABZR87_RS00935 0.41 +0.7 186,531 - ABZR87_RS00935 0.41 +1.8 186,531 - ABZR87_RS00935 0.41 +1.3 186,531 - ABZR87_RS00935 0.41 +0.9 186,531 - ABZR87_RS00935 0.41 +1.2 186,531 - ABZR87_RS00935 0.41 +1.7 186,531 - ABZR87_RS00935 0.41 +1.0 186,531 - ABZR87_RS00935 0.41 +0.1 186,531 - ABZR87_RS00935 0.41 +1.5 186,531 - ABZR87_RS00935 0.41 +1.3 186,560 + ABZR87_RS00935 0.43 +1.5 186,560 + ABZR87_RS00935 0.43 +1.0 186,560 + ABZR87_RS00935 0.43 +0.9 186,561 - ABZR87_RS00935 0.43 +1.0 187,048 + ABZR87_RS00935 0.74 -0.1 187,049 - ABZR87_RS00935 0.74 +0.8 187,049 - ABZR87_RS00935 0.74 +1.1 187,211 + ABZR87_RS00935 0.84 +0.8 187,211 + ABZR87_RS00935 0.84 +1.1 187,211 + ABZR87_RS00935 0.84 +1.4 187,212 - ABZR87_RS00935 0.84 +0.1 187,468 + -0.3 188,142 + ABZR87_RS00945 0.22 -1.0 188,142 + ABZR87_RS00945 0.22 +0.1 188,143 - ABZR87_RS00945 0.22 +0.5 188,143 - ABZR87_RS00945 0.22 -0.1 188,160 + ABZR87_RS00945 0.25 -0.6 188,322 + ABZR87_RS00945 0.50 +0.5 188,322 + ABZR87_RS00945 0.50 +0.3 188,322 + ABZR87_RS00945 0.50 -0.0 188,322 + ABZR87_RS00945 0.50 +0.4 188,322 + ABZR87_RS00945 0.50 +0.3 188,323 - ABZR87_RS00945 0.50 -0.4 188,323 - ABZR87_RS00945 0.50 -1.5 188,436 + ABZR87_RS00945 0.68 +0.1 188,436 + ABZR87_RS00945 0.68 -0.3 188,436 + ABZR87_RS00945 0.68 +0.5
Or see this region's nucleotide sequence