Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00815 and ABZR87_RS00820 are separated by 67 nucleotides ABZR87_RS00820 and ABZR87_RS00825 are separated by 105 nucleotides
ABZR87_RS00815: ABZR87_RS00815 - acylase, at 162,874 to 165,258
_RS00815
ABZR87_RS00820: ABZR87_RS00820 - YajQ family cyclic di-GMP-binding protein, at 165,326 to 165,811
_RS00820
ABZR87_RS00825: ABZR87_RS00825 - UDP-N-acetylmuramate dehydrogenase, at 165,917 to 166,945
_RS00825
Position (kb) 165
166 Strain fitness (log2 ratio) -2
-1
0
1
2 at 164.374 kb on + strand, within ABZR87_RS00815 at 164.375 kb on - strand, within ABZR87_RS00815 at 164.773 kb on + strand, within ABZR87_RS00815 at 164.774 kb on - strand, within ABZR87_RS00815 at 164.774 kb on - strand, within ABZR87_RS00815 at 164.983 kb on + strand, within ABZR87_RS00815 at 164.983 kb on + strand, within ABZR87_RS00815 at 164.984 kb on - strand, within ABZR87_RS00815 at 164.984 kb on - strand, within ABZR87_RS00815 at 165.043 kb on + strand at 165.043 kb on + strand at 165.044 kb on - strand at 165.044 kb on - strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.058 kb on + strand at 165.059 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.073 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.116 kb on - strand at 165.256 kb on + strand at 165.256 kb on + strand at 165.576 kb on + strand, within ABZR87_RS00820 at 165.576 kb on + strand, within ABZR87_RS00820 at 165.577 kb on - strand, within ABZR87_RS00820 at 165.791 kb on + strand at 165.791 kb on + strand at 165.792 kb on - strand at 165.792 kb on - strand at 165.792 kb on - strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.884 kb on + strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.885 kb on - strand at 165.886 kb on + strand at 165.886 kb on + strand at 165.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 164,374 + ABZR87_RS00815 0.63 -0.2 164,375 - ABZR87_RS00815 0.63 +1.8 164,773 + ABZR87_RS00815 0.80 +0.4 164,774 - ABZR87_RS00815 0.80 +0.6 164,774 - ABZR87_RS00815 0.80 -0.7 164,983 + ABZR87_RS00815 0.88 +0.3 164,983 + ABZR87_RS00815 0.88 -0.1 164,984 - ABZR87_RS00815 0.88 +0.2 164,984 - ABZR87_RS00815 0.88 -0.1 165,043 + -0.4 165,043 + -0.3 165,044 - +0.0 165,044 - -0.3 165,058 + +0.2 165,058 + -0.3 165,058 + -0.0 165,058 + +0.0 165,058 + -1.2 165,058 + +0.0 165,058 + -0.1 165,058 + -1.0 165,059 - +0.1 165,073 - +0.8 165,073 - +0.4 165,073 - -0.2 165,073 - -0.3 165,116 - -0.1 165,116 - +0.3 165,116 - -0.1 165,116 - -1.3 165,256 + +0.2 165,256 + -0.5 165,576 + ABZR87_RS00820 0.51 +0.7 165,576 + ABZR87_RS00820 0.51 +0.8 165,577 - ABZR87_RS00820 0.52 +1.0 165,791 + -0.7 165,791 + +1.6 165,792 - -0.1 165,792 - +0.3 165,792 - +0.5 165,884 + -0.4 165,884 + -0.2 165,884 + +0.8 165,884 + -1.4 165,884 + -0.1 165,884 + -1.0 165,885 - +0.6 165,885 - +0.0 165,885 - -0.0 165,885 - -1.8 165,886 + +0.4 165,886 + +0.5 165,886 + +0.5
Or see this region's nucleotide sequence