Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00800 and ABZR87_RS00805 are separated by 70 nucleotides ABZR87_RS00805 and ABZR87_RS00810 overlap by 4 nucleotides ABZR87_RS00810 and ABZR87_RS00815 are separated by 160 nucleotides
ABZR87_RS00800: ABZR87_RS00800 - Cys-tRNA(Pro) deacylase, at 160,515 to 161,006
_RS00800
ABZR87_RS00805: ABZR87_RS00805 - glycerol-3-phosphate 1-O-acyltransferase PlsY, at 161,077 to 161,700
_RS00805
ABZR87_RS00810: ABZR87_RS00810 - helix-turn-helix domain-containing protein, at 161,697 to 162,713
_RS00810
ABZR87_RS00815: ABZR87_RS00815 - acylase, at 162,874 to 165,258
_RS00815
Position (kb) 161
162
163 Strain fitness (log2 ratio) -2
-1
0
1 at 160.818 kb on + strand, within ABZR87_RS00800 at 160.819 kb on - strand, within ABZR87_RS00800 at 160.870 kb on - strand, within ABZR87_RS00800 at 160.870 kb on - strand, within ABZR87_RS00800 at 160.870 kb on - strand, within ABZR87_RS00800 at 160.905 kb on + strand, within ABZR87_RS00800 at 160.905 kb on + strand, within ABZR87_RS00800 at 160.905 kb on + strand, within ABZR87_RS00800 at 160.906 kb on - strand, within ABZR87_RS00800 at 161.045 kb on - strand at 161.045 kb on - strand at 161.698 kb on + strand at 161.698 kb on + strand at 161.699 kb on - strand at 162.104 kb on + strand, within ABZR87_RS00810 at 162.104 kb on + strand, within ABZR87_RS00810 at 162.105 kb on - strand, within ABZR87_RS00810 at 162.105 kb on - strand, within ABZR87_RS00810 at 162.373 kb on + strand, within ABZR87_RS00810 at 162.373 kb on + strand, within ABZR87_RS00810 at 162.668 kb on + strand at 162.668 kb on + strand at 162.669 kb on - strand at 162.669 kb on - strand at 162.721 kb on + strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.722 kb on - strand at 162.723 kb on + strand at 162.723 kb on + strand at 162.723 kb on + strand at 162.723 kb on + strand at 162.724 kb on - strand at 162.739 kb on + strand at 162.740 kb on - strand at 162.740 kb on - strand at 162.775 kb on + strand at 162.776 kb on - strand at 162.844 kb on - strand at 162.844 kb on - strand at 163.045 kb on + strand at 163.046 kb on - strand at 163.046 kb on - strand at 163.046 kb on - strand at 163.072 kb on + strand at 163.072 kb on + strand at 163.072 kb on + strand at 163.073 kb on - strand at 163.073 kb on - strand at 163.073 kb on - strand at 163.079 kb on - strand at 163.294 kb on + strand, within ABZR87_RS00815 at 163.294 kb on + strand, within ABZR87_RS00815 at 163.294 kb on + strand, within ABZR87_RS00815 at 163.295 kb on - strand, within ABZR87_RS00815 at 163.295 kb on - strand, within ABZR87_RS00815 at 163.306 kb on + strand, within ABZR87_RS00815 at 163.306 kb on + strand, within ABZR87_RS00815 at 163.307 kb on - strand, within ABZR87_RS00815 at 163.315 kb on + strand, within ABZR87_RS00815 at 163.605 kb on + strand, within ABZR87_RS00815 at 163.606 kb on - strand, within ABZR87_RS00815 at 163.666 kb on + strand, within ABZR87_RS00815 at 163.666 kb on + strand, within ABZR87_RS00815
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 160,818 + ABZR87_RS00800 0.62 +1.6 160,819 - ABZR87_RS00800 0.62 -0.3 160,870 - ABZR87_RS00800 0.72 +0.4 160,870 - ABZR87_RS00800 0.72 +0.1 160,870 - ABZR87_RS00800 0.72 +0.0 160,905 + ABZR87_RS00800 0.79 +0.2 160,905 + ABZR87_RS00800 0.79 -0.2 160,905 + ABZR87_RS00800 0.79 -0.1 160,906 - ABZR87_RS00800 0.79 -1.8 161,045 - +0.3 161,045 - +0.4 161,698 + -1.1 161,698 + -0.5 161,699 - -0.7 162,104 + ABZR87_RS00810 0.40 -0.5 162,104 + ABZR87_RS00810 0.40 -0.2 162,105 - ABZR87_RS00810 0.40 +0.2 162,105 - ABZR87_RS00810 0.40 -0.4 162,373 + ABZR87_RS00810 0.66 -0.5 162,373 + ABZR87_RS00810 0.66 -0.8 162,668 + +1.6 162,668 + +0.0 162,669 - -1.2 162,669 - +0.0 162,721 + -0.5 162,722 - -0.4 162,722 - -0.1 162,722 - -0.6 162,722 - +0.2 162,722 - -0.6 162,722 - -0.1 162,722 - +0.5 162,723 + -0.0 162,723 + -0.1 162,723 + -0.0 162,723 + +0.3 162,724 - -0.4 162,739 + -0.2 162,740 - +0.6 162,740 - +0.4 162,775 + -1.5 162,776 - +0.1 162,844 - +0.5 162,844 - -0.4 163,045 + +1.6 163,046 - +0.2 163,046 - +0.8 163,046 - +1.0 163,072 + +0.2 163,072 + -1.1 163,072 + +0.4 163,073 - -0.3 163,073 - -0.5 163,073 - -1.3 163,079 - -0.0 163,294 + ABZR87_RS00815 0.18 +0.3 163,294 + ABZR87_RS00815 0.18 -0.2 163,294 + ABZR87_RS00815 0.18 +0.9 163,295 - ABZR87_RS00815 0.18 +1.5 163,295 - ABZR87_RS00815 0.18 +0.9 163,306 + ABZR87_RS00815 0.18 -0.7 163,306 + ABZR87_RS00815 0.18 -0.1 163,307 - ABZR87_RS00815 0.18 -0.8 163,315 + ABZR87_RS00815 0.18 +0.6 163,605 + ABZR87_RS00815 0.31 +0.6 163,606 - ABZR87_RS00815 0.31 +0.0 163,666 + ABZR87_RS00815 0.33 +0.7 163,666 + ABZR87_RS00815 0.33 -0.3
Or see this region's nucleotide sequence