Experiment: Ra3_0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS00740 and ABZR87_RS00745 are separated by 156 nucleotides ABZR87_RS00745 and ABZR87_RS00750 are separated by 14 nucleotides ABZR87_RS00750 and ABZR87_RS00755 are separated by 119 nucleotides
ABZR87_RS00740: ABZR87_RS00740 - adenylate kinase, at 149,556 to 150,224
_RS00740
ABZR87_RS00745: ABZR87_RS00745 - 3-hydroxyacyl-CoA dehydrogenase, at 150,381 to 151,139
_RS00745
ABZR87_RS00750: ABZR87_RS00750 - LysR family transcriptional regulator, at 151,154 to 152,047
_RS00750
ABZR87_RS00755: ABZR87_RS00755 - bile acid:sodium symporter family protein, at 152,167 to 153,198
_RS00755
Position (kb) 151
152
153 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 150.308 kb on + strand at 150.309 kb on - strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.313 kb on + strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.314 kb on - strand at 150.339 kb on - strand at 150.400 kb on + strand at 150.400 kb on + strand at 150.400 kb on + strand at 150.401 kb on - strand at 150.401 kb on - strand at 150.401 kb on - strand at 150.441 kb on - strand at 150.636 kb on - strand, within ABZR87_RS00745 at 150.853 kb on - strand, within ABZR87_RS00745 at 151.048 kb on - strand, within ABZR87_RS00745 at 151.137 kb on + strand at 151.390 kb on + strand, within ABZR87_RS00750 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.390 kb on + strand, within ABZR87_RS00750 at 151.391 kb on - strand, within ABZR87_RS00750 at 151.614 kb on - strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.716 kb on + strand, within ABZR87_RS00750 at 151.717 kb on - strand, within ABZR87_RS00750 at 151.717 kb on - strand, within ABZR87_RS00750 at 151.717 kb on - strand, within ABZR87_RS00750 at 152.086 kb on - strand at 152.095 kb on - strand at 152.110 kb on + strand at 152.111 kb on - strand at 152.117 kb on + strand at 152.142 kb on + strand at 152.143 kb on - strand at 152.143 kb on - strand at 152.146 kb on + strand at 152.147 kb on - strand at 152.147 kb on - strand at 152.147 kb on - strand at 152.183 kb on + strand at 152.183 kb on + strand at 152.183 kb on + strand at 152.184 kb on - strand at 152.184 kb on - strand at 152.184 kb on - strand at 152.500 kb on + strand, within ABZR87_RS00755 at 152.500 kb on + strand, within ABZR87_RS00755 at 152.500 kb on + strand, within ABZR87_RS00755 at 152.501 kb on - strand, within ABZR87_RS00755 at 152.501 kb on - strand, within ABZR87_RS00755 at 152.501 kb on - strand, within ABZR87_RS00755 at 152.863 kb on + strand, within ABZR87_RS00755 at 152.864 kb on - strand, within ABZR87_RS00755
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_0.1 remove 150,308 + +0.0 150,309 - +0.4 150,313 + +2.2 150,313 + +1.3 150,313 + -1.1 150,313 + -0.3 150,313 + +0.6 150,313 + -2.1 150,313 + +0.1 150,313 + +0.6 150,313 + -1.6 150,313 + +0.3 150,314 - -0.2 150,314 - -0.5 150,314 - -0.0 150,314 - +0.1 150,314 - +0.9 150,314 - +0.6 150,314 - +0.3 150,314 - -0.1 150,314 - +0.2 150,314 - +0.2 150,314 - +0.2 150,314 - +0.9 150,314 - -0.1 150,314 - +0.2 150,339 - -0.5 150,400 + +1.4 150,400 + -2.8 150,400 + -0.1 150,401 - -0.1 150,401 - +0.1 150,401 - +0.3 150,441 - -0.5 150,636 - ABZR87_RS00745 0.34 +0.6 150,853 - ABZR87_RS00745 0.62 +0.6 151,048 - ABZR87_RS00745 0.88 +0.4 151,137 + +1.2 151,390 + ABZR87_RS00750 0.26 +1.1 151,390 + ABZR87_RS00750 0.26 -1.0 151,390 + ABZR87_RS00750 0.26 +0.0 151,390 + ABZR87_RS00750 0.26 -0.1 151,391 - ABZR87_RS00750 0.27 +0.8 151,614 - ABZR87_RS00750 0.51 -0.3 151,716 + ABZR87_RS00750 0.63 -0.5 151,716 + ABZR87_RS00750 0.63 +1.4 151,716 + ABZR87_RS00750 0.63 +0.5 151,716 + ABZR87_RS00750 0.63 -0.1 151,716 + ABZR87_RS00750 0.63 -0.7 151,716 + ABZR87_RS00750 0.63 +0.5 151,716 + ABZR87_RS00750 0.63 -0.4 151,717 - ABZR87_RS00750 0.63 +2.0 151,717 - ABZR87_RS00750 0.63 +0.3 151,717 - ABZR87_RS00750 0.63 -0.2 152,086 - +0.1 152,095 - +1.4 152,110 + -0.1 152,111 - +0.2 152,117 + +0.3 152,142 + -1.1 152,143 - -0.3 152,143 - -0.3 152,146 + -1.4 152,147 - -0.7 152,147 - -0.7 152,147 - -0.0 152,183 + +0.4 152,183 + -0.3 152,183 + +0.2 152,184 - -0.9 152,184 - -0.2 152,184 - +0.2 152,500 + ABZR87_RS00755 0.32 +0.9 152,500 + ABZR87_RS00755 0.32 +0.0 152,500 + ABZR87_RS00755 0.32 +0.7 152,501 - ABZR87_RS00755 0.32 +0.2 152,501 - ABZR87_RS00755 0.32 -0.2 152,501 - ABZR87_RS00755 0.32 -0.3 152,863 + ABZR87_RS00755 0.67 +0.2 152,864 - ABZR87_RS00755 0.68 +1.6
Or see this region's nucleotide sequence