Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0026

Experiment: MoYLS4 with Ammonium Persulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0025 and tRNA-Ala are separated by 173 nucleotidestRNA-Ala and DVU0026 are separated by 364 nucleotidesDVU0026 and DVU0027 are separated by 218 nucleotides DVU0025: DVU0025 - sensory box histidine kinase (TIGR), at 27,714 to 29,873 DVU0025 DVU_tRNA-Ala-2: tRNA-Ala - tRNA with anticodon GGC for Ala (VIMSS-AUTO), at 30,047 to 30,122 tRNA-Ala DVU0026: DVU0026 - conserved hypothetical protein (TIGR), at 30,487 to 31,059 DVU0026 DVU0027: DVU0027 - membrane protein, putative (TIGR), at 31,278 to 32,702 DVU0027 Position (kb) 30 31 32Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 29.497 kb on + strand, within DVU0025at 29.546 kb on + strand, within DVU0025at 29.569 kb on - strand, within DVU0025at 29.571 kb on + strand, within DVU0025at 29.579 kb on + strand, within DVU0025at 29.596 kb on + strand, within DVU0025at 29.676 kb on + strandat 29.702 kb on + strandat 29.722 kb on - strandat 29.758 kb on - strandat 29.778 kb on - strandat 29.789 kb on + strandat 29.866 kb on - strandat 29.906 kb on - strandat 29.933 kb on - strandat 29.940 kb on + strandat 29.952 kb on - strandat 30.091 kb on + strand, within tRNA-Alaat 30.227 kb on + strandat 30.240 kb on - strandat 30.305 kb on + strandat 30.366 kb on - strandat 30.379 kb on + strandat 30.485 kb on - strandat 30.708 kb on + strand, within DVU0026at 30.763 kb on - strand, within DVU0026at 30.809 kb on - strand, within DVU0026at 30.818 kb on + strand, within DVU0026at 30.833 kb on + strand, within DVU0026at 30.849 kb on - strand, within DVU0026at 30.909 kb on - strand, within DVU0026at 30.938 kb on + strand, within DVU0026at 30.938 kb on + strand, within DVU0026at 31.008 kb on + strandat 31.052 kb on - strandat 31.080 kb on + strandat 31.252 kb on + strandat 31.364 kb on - strandat 31.371 kb on + strandat 31.374 kb on - strandat 31.437 kb on + strand, within DVU0027at 31.532 kb on - strand, within DVU0027at 31.591 kb on - strand, within DVU0027at 31.623 kb on + strand, within DVU0027at 31.660 kb on - strand, within DVU0027at 31.832 kb on - strand, within DVU0027at 31.832 kb on - strand, within DVU0027at 31.993 kb on + strand, within DVU0027at 31.993 kb on + strand, within DVU0027at 31.998 kb on + strand, within DVU0027at 32.044 kb on - strand, within DVU0027

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ammonium Persulfate 1mM
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29,497 + DVU0025 0.83 +0.2
29,546 + DVU0025 0.85 +0.2
29,569 - DVU0025 0.86 -0.3
29,571 + DVU0025 0.86 -0.0
29,579 + DVU0025 0.86 -0.2
29,596 + DVU0025 0.87 +0.3
29,676 + -0.3
29,702 + -0.1
29,722 - +0.1
29,758 - +0.3
29,778 - -0.0
29,789 + +0.9
29,866 - -0.2
29,906 - +0.5
29,933 - -0.8
29,940 + -1.3
29,952 - -0.1
30,091 + tRNA-Ala DVU_tRNA-Ala-2 0.58 +1.1
30,227 + -0.1
30,240 - +1.1
30,305 + +0.5
30,366 - -0.7
30,379 + +0.2
30,485 - +0.1
30,708 + DVU0026 0.39 -0.5
30,763 - DVU0026 0.48 +1.4
30,809 - DVU0026 0.56 +0.2
30,818 + DVU0026 0.58 +0.3
30,833 + DVU0026 0.60 -0.2
30,849 - DVU0026 0.63 -0.3
30,909 - DVU0026 0.74 -0.2
30,938 + DVU0026 0.79 -0.2
30,938 + DVU0026 0.79 -0.5
31,008 + -0.7
31,052 - -0.2
31,080 + -2.8
31,252 + +0.5
31,364 - -0.8
31,371 + +0.8
31,374 - -0.4
31,437 + DVU0027 0.11 +0.7
31,532 - DVU0027 0.18 -0.2
31,591 - DVU0027 0.22 -0.4
31,623 + DVU0027 0.24 -2.2
31,660 - DVU0027 0.27 -0.5
31,832 - DVU0027 0.39 -1.1
31,832 - DVU0027 0.39 -0.3
31,993 + DVU0027 0.50 +2.1
31,993 + DVU0027 0.50 -0.2
31,998 + DVU0027 0.51 -0.6
32,044 - DVU0027 0.54 +0.3

Or see this region's nucleotide sequence