Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2194

Experiment: MoYLS4 with Ammonium Persulfate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2191 and DVU2192 overlap by 8 nucleotidesDVU2192 and DVU2193 are separated by 26 nucleotidesDVU2193 and DVU2194 are separated by 46 nucleotidesDVU2194 and DVU2195 overlap by 8 nucleotidesDVU2195 and DVU2196 are separated by 49 nucleotidesDVU2196 and DVU2197 are separated by 0 nucleotides DVU2191: DVU2191 - hypothetical protein (TIGR), at 2,290,097 to 2,290,453 DVU2191 DVU2192: DVU2192 - hypothetical protein (TIGR), at 2,290,446 to 2,290,601 DVU2192 DVU2193: DVU2193 - hypothetical protein (TIGR), at 2,290,628 to 2,291,182 DVU2193 DVU2194: DVU2194 - hypothetical protein (TIGR), at 2,291,229 to 2,291,918 DVU2194 DVU2195: DVU2195 - hypothetical protein (TIGR), at 2,291,911 to 2,292,168 DVU2195 DVU2196: DVU2196 - hypothetical protein (TIGR), at 2,292,218 to 2,292,763 DVU2196 DVU2197: DVU2197 - site-specific recombinase, phage integrase family (TIGR), at 2,292,764 to 2,293,693 DVU2197 Position (kb) 2291 2292Strain fitness (log2 ratio) -2 -1 0 1 2at 2290.276 kb on - strand, within DVU2191at 2290.282 kb on - strand, within DVU2191at 2290.282 kb on - strand, within DVU2191at 2290.437 kb on + strandat 2290.511 kb on + strand, within DVU2192at 2290.513 kb on + strand, within DVU2192at 2290.519 kb on + strand, within DVU2192at 2290.527 kb on - strand, within DVU2192at 2290.596 kb on + strandat 2290.618 kb on - strandat 2290.643 kb on + strandat 2290.666 kb on - strandat 2290.688 kb on + strand, within DVU2193at 2290.688 kb on + strand, within DVU2193at 2290.688 kb on + strand, within DVU2193at 2290.688 kb on + strand, within DVU2193at 2290.720 kb on + strand, within DVU2193at 2290.729 kb on - strand, within DVU2193at 2290.733 kb on + strand, within DVU2193at 2290.733 kb on + strand, within DVU2193at 2290.741 kb on - strand, within DVU2193at 2290.741 kb on - strand, within DVU2193at 2290.779 kb on + strand, within DVU2193at 2290.784 kb on + strand, within DVU2193at 2290.787 kb on - strand, within DVU2193at 2290.811 kb on + strand, within DVU2193at 2290.832 kb on - strand, within DVU2193at 2290.832 kb on - strand, within DVU2193at 2290.843 kb on + strand, within DVU2193at 2290.843 kb on + strand, within DVU2193at 2290.843 kb on + strand, within DVU2193at 2290.962 kb on - strand, within DVU2193at 2290.994 kb on + strand, within DVU2193at 2291.081 kb on + strand, within DVU2193at 2291.267 kb on + strandat 2291.311 kb on - strand, within DVU2194at 2291.321 kb on - strand, within DVU2194at 2291.328 kb on - strand, within DVU2194at 2291.338 kb on - strand, within DVU2194at 2291.342 kb on + strand, within DVU2194at 2291.342 kb on + strand, within DVU2194at 2291.403 kb on - strand, within DVU2194at 2291.475 kb on + strand, within DVU2194at 2291.539 kb on - strand, within DVU2194at 2291.754 kb on + strand, within DVU2194at 2291.764 kb on - strand, within DVU2194at 2291.809 kb on + strand, within DVU2194at 2291.824 kb on + strand, within DVU2194at 2291.958 kb on + strand, within DVU2195at 2291.970 kb on + strand, within DVU2195at 2291.987 kb on - strand, within DVU2195at 2292.004 kb on + strand, within DVU2195at 2292.012 kb on - strand, within DVU2195at 2292.031 kb on - strand, within DVU2195at 2292.049 kb on + strand, within DVU2195at 2292.049 kb on + strand, within DVU2195at 2292.049 kb on + strand, within DVU2195at 2292.049 kb on + strand, within DVU2195at 2292.050 kb on - strand, within DVU2195at 2292.057 kb on - strand, within DVU2195at 2292.057 kb on - strand, within DVU2195at 2292.057 kb on - strand, within DVU2195at 2292.057 kb on - strand, within DVU2195at 2292.057 kb on - strand, within DVU2195at 2292.081 kb on + strand, within DVU2195at 2292.096 kb on - strand, within DVU2195at 2292.128 kb on - strand, within DVU2195at 2292.234 kb on + strandat 2292.317 kb on + strand, within DVU2196at 2292.317 kb on + strand, within DVU2196at 2292.362 kb on - strand, within DVU2196at 2292.371 kb on + strand, within DVU2196at 2292.387 kb on + strand, within DVU2196at 2292.413 kb on + strand, within DVU2196at 2292.418 kb on + strand, within DVU2196at 2292.419 kb on + strand, within DVU2196at 2292.502 kb on + strand, within DVU2196at 2292.587 kb on - strand, within DVU2196at 2292.642 kb on - strand, within DVU2196at 2292.699 kb on - strand, within DVU2196at 2292.699 kb on - strand, within DVU2196at 2292.708 kb on - strand, within DVU2196at 2292.724 kb on + strandat 2292.724 kb on + strandat 2292.792 kb on + strandat 2292.870 kb on + strand, within DVU2197at 2292.870 kb on + strand, within DVU2197

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Ammonium Persulfate 1mM
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2,290,276 - DVU2191 0.50 +0.8
2,290,282 - DVU2191 0.52 -1.1
2,290,282 - DVU2191 0.52 +0.2
2,290,437 + -0.1
2,290,511 + DVU2192 0.42 -0.1
2,290,513 + DVU2192 0.43 -0.5
2,290,519 + DVU2192 0.47 +0.3
2,290,527 - DVU2192 0.52 +0.4
2,290,596 + -0.3
2,290,618 - -0.4
2,290,643 + +0.7
2,290,666 - -0.0
2,290,688 + DVU2193 0.11 -0.0
2,290,688 + DVU2193 0.11 +0.7
2,290,688 + DVU2193 0.11 +0.1
2,290,688 + DVU2193 0.11 +0.1
2,290,720 + DVU2193 0.17 -0.1
2,290,729 - DVU2193 0.18 +0.0
2,290,733 + DVU2193 0.19 -0.5
2,290,733 + DVU2193 0.19 -1.0
2,290,741 - DVU2193 0.20 -0.4
2,290,741 - DVU2193 0.20 +0.2
2,290,779 + DVU2193 0.27 +0.3
2,290,784 + DVU2193 0.28 -1.8
2,290,787 - DVU2193 0.29 -1.8
2,290,811 + DVU2193 0.33 +1.2
2,290,832 - DVU2193 0.37 -0.1
2,290,832 - DVU2193 0.37 +0.0
2,290,843 + DVU2193 0.39 +0.3
2,290,843 + DVU2193 0.39 -1.9
2,290,843 + DVU2193 0.39 -0.3
2,290,962 - DVU2193 0.60 +0.0
2,290,994 + DVU2193 0.66 -0.4
2,291,081 + DVU2193 0.82 +0.1
2,291,267 + -0.0
2,291,311 - DVU2194 0.12 -0.8
2,291,321 - DVU2194 0.13 -0.2
2,291,328 - DVU2194 0.14 +1.7
2,291,338 - DVU2194 0.16 -1.1
2,291,342 + DVU2194 0.16 -0.6
2,291,342 + DVU2194 0.16 -0.5
2,291,403 - DVU2194 0.25 -0.1
2,291,475 + DVU2194 0.36 -0.3
2,291,539 - DVU2194 0.45 -0.2
2,291,754 + DVU2194 0.76 -0.2
2,291,764 - DVU2194 0.78 -0.7
2,291,809 + DVU2194 0.84 -0.6
2,291,824 + DVU2194 0.86 +1.2
2,291,958 + DVU2195 0.18 +0.1
2,291,970 + DVU2195 0.23 +1.6
2,291,987 - DVU2195 0.29 -0.4
2,292,004 + DVU2195 0.36 +0.5
2,292,012 - DVU2195 0.39 -0.1
2,292,031 - DVU2195 0.47 +2.2
2,292,049 + DVU2195 0.53 +0.5
2,292,049 + DVU2195 0.53 +1.2
2,292,049 + DVU2195 0.53 -0.2
2,292,049 + DVU2195 0.53 +0.5
2,292,050 - DVU2195 0.54 -0.2
2,292,057 - DVU2195 0.57 -0.6
2,292,057 - DVU2195 0.57 -0.5
2,292,057 - DVU2195 0.57 -0.0
2,292,057 - DVU2195 0.57 -0.1
2,292,057 - DVU2195 0.57 -1.4
2,292,081 + DVU2195 0.66 -0.5
2,292,096 - DVU2195 0.72 -2.2
2,292,128 - DVU2195 0.84 -0.1
2,292,234 + -2.5
2,292,317 + DVU2196 0.18 -0.3
2,292,317 + DVU2196 0.18 -0.6
2,292,362 - DVU2196 0.26 +0.1
2,292,371 + DVU2196 0.28 +0.0
2,292,387 + DVU2196 0.31 -0.3
2,292,413 + DVU2196 0.36 +1.7
2,292,418 + DVU2196 0.37 -0.0
2,292,419 + DVU2196 0.37 +0.0
2,292,502 + DVU2196 0.52 +2.2
2,292,587 - DVU2196 0.68 -0.1
2,292,642 - DVU2196 0.78 -0.3
2,292,699 - DVU2196 0.88 +1.2
2,292,699 - DVU2196 0.88 -0.4
2,292,708 - DVU2196 0.90 +0.2
2,292,724 + -2.0
2,292,724 + -0.1
2,292,792 + +0.0
2,292,870 + DVU2197 0.11 +0.5
2,292,870 + DVU2197 0.11 -0.3

Or see this region's nucleotide sequence