Experiment: Carbon source L-Ornithine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07640 and PGA1_c07650 are separated by 175 nucleotides PGA1_c07650 and PGA1_c07660 are separated by 378 nucleotides PGA1_c07660 and PGA1_c07670 are separated by 438 nucleotides
PGA1_c07640: PGA1_c07640 - O-acetylhomoserine / O-acetylserine sulfhydrylase, at 791,541 to 792,833
_c07640
PGA1_c07650: PGA1_c07650 - hypothetical protein, at 793,009 to 793,998
_c07650
PGA1_c07660: PGA1_c07660 - tRNA-Thr, at 794,377 to 794,452
_c07660
PGA1_c07670: PGA1_c07670 - two component regulatory sytem, at 794,891 to 796,633
_c07670
Position (kb) 793
794 Strain fitness (log2 ratio) -2
-1
0
1
2 at 792.026 kb on + strand, within PGA1_c07640 at 792.041 kb on + strand, within PGA1_c07640 at 792.049 kb on + strand, within PGA1_c07640 at 792.086 kb on + strand, within PGA1_c07640 at 792.094 kb on - strand, within PGA1_c07640 at 792.100 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.106 kb on + strand, within PGA1_c07640 at 792.114 kb on - strand, within PGA1_c07640 at 792.227 kb on + strand, within PGA1_c07640 at 792.261 kb on + strand, within PGA1_c07640 at 792.265 kb on - strand, within PGA1_c07640 at 792.346 kb on + strand, within PGA1_c07640 at 792.346 kb on + strand, within PGA1_c07640 at 792.374 kb on + strand, within PGA1_c07640 at 792.412 kb on + strand, within PGA1_c07640 at 792.412 kb on + strand, within PGA1_c07640 at 792.413 kb on + strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.420 kb on - strand, within PGA1_c07640 at 792.421 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.487 kb on - strand, within PGA1_c07640 at 792.555 kb on + strand, within PGA1_c07640 at 792.563 kb on - strand, within PGA1_c07640 at 792.585 kb on - strand, within PGA1_c07640 at 792.631 kb on - strand, within PGA1_c07640 at 792.631 kb on - strand, within PGA1_c07640 at 792.648 kb on + strand, within PGA1_c07640 at 792.765 kb on + strand at 792.810 kb on + strand at 792.831 kb on + strand at 792.831 kb on + strand at 792.839 kb on + strand at 792.844 kb on + strand at 792.844 kb on + strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.852 kb on - strand at 792.887 kb on + strand at 792.893 kb on - strand at 792.893 kb on - strand at 792.907 kb on - strand at 792.943 kb on - strand at 792.950 kb on + strand at 792.977 kb on + strand at 792.983 kb on - strand at 793.066 kb on + strand at 793.106 kb on + strand at 793.167 kb on + strand, within PGA1_c07650 at 793.167 kb on + strand, within PGA1_c07650 at 793.175 kb on - strand, within PGA1_c07650 at 793.177 kb on + strand, within PGA1_c07650 at 793.192 kb on - strand, within PGA1_c07650 at 793.220 kb on + strand, within PGA1_c07650 at 793.220 kb on + strand, within PGA1_c07650 at 793.228 kb on - strand, within PGA1_c07650 at 793.258 kb on - strand, within PGA1_c07650 at 793.335 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.419 kb on + strand, within PGA1_c07650 at 793.427 kb on - strand, within PGA1_c07650 at 793.446 kb on - strand, within PGA1_c07650 at 793.493 kb on + strand, within PGA1_c07650 at 793.503 kb on + strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.511 kb on - strand, within PGA1_c07650 at 793.553 kb on - strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.566 kb on + strand, within PGA1_c07650 at 793.659 kb on + strand, within PGA1_c07650 at 793.703 kb on + strand, within PGA1_c07650 at 793.733 kb on - strand, within PGA1_c07650 at 793.745 kb on + strand, within PGA1_c07650 at 793.753 kb on - strand, within PGA1_c07650 at 793.755 kb on + strand, within PGA1_c07650 at 793.758 kb on - strand, within PGA1_c07650 at 793.801 kb on + strand, within PGA1_c07650 at 793.855 kb on - strand, within PGA1_c07650 at 793.864 kb on - strand, within PGA1_c07650 at 793.882 kb on + strand, within PGA1_c07650 at 793.885 kb on - strand, within PGA1_c07650 at 793.911 kb on + strand at 793.923 kb on - strand at 793.952 kb on + strand at 793.952 kb on + strand at 794.023 kb on - strand at 794.037 kb on - strand at 794.042 kb on - strand at 794.051 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.056 kb on + strand at 794.095 kb on + strand at 794.113 kb on + strand at 794.121 kb on - strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.149 kb on + strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.157 kb on - strand at 794.252 kb on + strand at 794.253 kb on + strand at 794.552 kb on - strand at 794.568 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.638 kb on + strand at 794.646 kb on - strand at 794.652 kb on + strand at 794.662 kb on + strand at 794.665 kb on + strand at 794.695 kb on - strand at 794.731 kb on + strand at 794.752 kb on + strand at 794.760 kb on - strand at 794.804 kb on + strand at 794.804 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.835 kb on + strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.843 kb on - strand at 794.857 kb on + strand at 794.857 kb on + strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.865 kb on - strand at 794.954 kb on - strand at 794.954 kb on - strand at 794.955 kb on + strand at 794.960 kb on + strand at 794.968 kb on - strand at 794.982 kb on + strand at 794.988 kb on + strand at 794.992 kb on + strand at 794.995 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand at 794.996 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM remove 792,026 + PGA1_c07640 0.38 -2.5 792,041 + PGA1_c07640 0.39 -0.5 792,049 + PGA1_c07640 0.39 -1.8 792,086 + PGA1_c07640 0.42 +0.5 792,094 - PGA1_c07640 0.43 +0.2 792,100 + PGA1_c07640 0.43 +0.4 792,106 + PGA1_c07640 0.44 -0.6 792,106 + PGA1_c07640 0.44 -0.0 792,106 + PGA1_c07640 0.44 -0.4 792,106 + PGA1_c07640 0.44 +0.1 792,106 + PGA1_c07640 0.44 -0.2 792,106 + PGA1_c07640 0.44 -0.0 792,106 + PGA1_c07640 0.44 +0.5 792,114 - PGA1_c07640 0.44 -1.1 792,227 + PGA1_c07640 0.53 +1.2 792,261 + PGA1_c07640 0.56 -0.2 792,265 - PGA1_c07640 0.56 +0.2 792,346 + PGA1_c07640 0.62 +0.7 792,346 + PGA1_c07640 0.62 -0.3 792,374 + PGA1_c07640 0.64 +0.5 792,412 + PGA1_c07640 0.67 +1.1 792,412 + PGA1_c07640 0.67 -0.5 792,413 + PGA1_c07640 0.67 +0.2 792,420 - PGA1_c07640 0.68 -0.1 792,420 - PGA1_c07640 0.68 -0.7 792,420 - PGA1_c07640 0.68 +0.6 792,420 - PGA1_c07640 0.68 +0.2 792,420 - PGA1_c07640 0.68 +1.2 792,420 - PGA1_c07640 0.68 +0.8 792,421 - PGA1_c07640 0.68 -0.5 792,487 - PGA1_c07640 0.73 +1.2 792,487 - PGA1_c07640 0.73 -0.2 792,487 - PGA1_c07640 0.73 +1.8 792,487 - PGA1_c07640 0.73 -1.3 792,555 + PGA1_c07640 0.78 -0.4 792,563 - PGA1_c07640 0.79 +1.2 792,585 - PGA1_c07640 0.81 -0.0 792,631 - PGA1_c07640 0.84 +0.5 792,631 - PGA1_c07640 0.84 +0.8 792,648 + PGA1_c07640 0.86 -2.2 792,765 + -0.8 792,810 + -0.9 792,831 + +0.8 792,831 + +0.2 792,839 + +0.4 792,844 + +1.0 792,844 + +0.8 792,852 - -1.3 792,852 - -0.5 792,852 - -0.6 792,852 - -0.5 792,887 + -0.6 792,893 - -0.3 792,893 - +0.0 792,907 - +1.4 792,943 - -0.4 792,950 + +0.5 792,977 + -1.1 792,983 - -1.6 793,066 + +1.3 793,106 + -1.3 793,167 + PGA1_c07650 0.16 +0.2 793,167 + PGA1_c07650 0.16 -2.3 793,175 - PGA1_c07650 0.17 +0.9 793,177 + PGA1_c07650 0.17 +0.2 793,192 - PGA1_c07650 0.18 -0.7 793,220 + PGA1_c07650 0.21 +0.9 793,220 + PGA1_c07650 0.21 -2.1 793,228 - PGA1_c07650 0.22 -0.2 793,258 - PGA1_c07650 0.25 +0.2 793,335 + PGA1_c07650 0.33 +0.8 793,419 + PGA1_c07650 0.41 +0.3 793,419 + PGA1_c07650 0.41 -0.2 793,419 + PGA1_c07650 0.41 -0.2 793,427 - PGA1_c07650 0.42 +0.6 793,446 - PGA1_c07650 0.44 -0.4 793,493 + PGA1_c07650 0.49 +0.3 793,503 + PGA1_c07650 0.50 +1.3 793,511 - PGA1_c07650 0.51 +1.0 793,511 - PGA1_c07650 0.51 -0.8 793,511 - PGA1_c07650 0.51 -0.2 793,511 - PGA1_c07650 0.51 -0.5 793,511 - PGA1_c07650 0.51 +0.3 793,511 - PGA1_c07650 0.51 +0.4 793,553 - PGA1_c07650 0.55 -1.1 793,566 + PGA1_c07650 0.56 +0.9 793,566 + PGA1_c07650 0.56 +0.9 793,566 + PGA1_c07650 0.56 +1.9 793,659 + PGA1_c07650 0.66 -0.9 793,703 + PGA1_c07650 0.70 +0.7 793,733 - PGA1_c07650 0.73 +0.5 793,745 + PGA1_c07650 0.74 +0.5 793,753 - PGA1_c07650 0.75 +0.1 793,755 + PGA1_c07650 0.75 -0.4 793,758 - PGA1_c07650 0.76 +0.2 793,801 + PGA1_c07650 0.80 +0.8 793,855 - PGA1_c07650 0.85 +0.6 793,864 - PGA1_c07650 0.86 -0.2 793,882 + PGA1_c07650 0.88 +0.9 793,885 - PGA1_c07650 0.88 -0.4 793,911 + +1.0 793,923 - +0.9 793,952 + +0.0 793,952 + +1.0 794,023 - +0.1 794,037 - +0.2 794,042 - +1.4 794,051 + -0.1 794,056 + -0.6 794,056 + -0.6 794,056 + +1.1 794,095 + +0.2 794,113 + +1.3 794,121 - -0.1 794,149 + +0.1 794,149 + -0.3 794,149 + -0.8 794,149 + +1.1 794,149 + -0.5 794,149 + -0.0 794,157 - +0.7 794,157 - +0.7 794,157 - -0.1 794,157 - -0.1 794,157 - -1.8 794,157 - +0.6 794,157 - -0.5 794,157 - +1.9 794,157 - -0.8 794,252 + -0.4 794,253 + +1.3 794,552 - +0.8 794,568 + -1.6 794,638 + +0.4 794,638 + +0.2 794,638 + -0.3 794,638 + +0.8 794,638 + +1.2 794,646 - +0.1 794,652 + +0.4 794,662 + -0.2 794,665 + +0.4 794,695 - -0.4 794,731 + +0.6 794,752 + +0.9 794,760 - -1.0 794,804 + -1.0 794,804 + -0.1 794,835 + -0.6 794,835 + +0.5 794,835 + +0.5 794,835 + -0.3 794,835 + +0.2 794,835 + +1.0 794,835 + -0.3 794,835 + +0.2 794,843 - -0.5 794,843 - +0.3 794,843 - +0.8 794,843 - -1.3 794,843 - +0.1 794,843 - -0.7 794,843 - -0.3 794,857 + +1.4 794,857 + -0.2 794,865 - -0.1 794,865 - -1.2 794,865 - -0.2 794,865 - -0.0 794,865 - +1.0 794,954 - -0.2 794,954 - +0.1 794,955 + +0.9 794,960 + +0.3 794,968 - +0.9 794,982 + -0.7 794,988 + -0.5 794,992 + -0.3 794,995 - -0.1 794,996 - -2.0 794,996 - +0.3 794,996 - -1.0
Or see this region's nucleotide sequence