Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05820

Experiment: Carbon source L-Ornithine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05810 and PGA1_c05820 are separated by 104 nucleotidesPGA1_c05820 and PGA1_c05830 are separated by 105 nucleotidesPGA1_c05830 and PGA1_c05840 are separated by 206 nucleotides PGA1_c05810: PGA1_c05810 - putative transporter protein, MFS family, at 595,860 to 597,095 _c05810 PGA1_c05820: PGA1_c05820 - ribosomal protein L11 methyltransferase PrmA, at 597,200 to 598,072 _c05820 PGA1_c05830: PGA1_c05830 - hypothetical protein, at 598,178 to 598,522 _c05830 PGA1_c05840: PGA1_c05840 - Uncharacterized conserved small protein, at 598,729 to 598,947 _c05840 Position (kb) 597 598 599Strain fitness (log2 ratio) -2 -1 0 1 2at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.201 kb on + strand, within PGA1_c05810at 596.209 kb on - strand, within PGA1_c05810at 596.278 kb on - strand, within PGA1_c05810at 596.299 kb on - strand, within PGA1_c05810at 596.336 kb on - strand, within PGA1_c05810at 596.359 kb on - strand, within PGA1_c05810at 596.359 kb on - strand, within PGA1_c05810at 596.369 kb on - strand, within PGA1_c05810at 596.473 kb on + strand, within PGA1_c05810at 596.507 kb on + strand, within PGA1_c05810at 596.507 kb on + strand, within PGA1_c05810at 596.517 kb on + strand, within PGA1_c05810at 596.565 kb on + strand, within PGA1_c05810at 596.565 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.614 kb on + strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.622 kb on - strand, within PGA1_c05810at 596.627 kb on - strand, within PGA1_c05810at 596.714 kb on + strand, within PGA1_c05810at 596.719 kb on + strand, within PGA1_c05810at 596.724 kb on + strand, within PGA1_c05810at 596.727 kb on - strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.729 kb on + strand, within PGA1_c05810at 596.737 kb on - strand, within PGA1_c05810at 596.803 kb on + strand, within PGA1_c05810at 596.803 kb on + strand, within PGA1_c05810at 596.810 kb on - strand, within PGA1_c05810at 596.811 kb on - strand, within PGA1_c05810at 596.849 kb on + strand, within PGA1_c05810at 596.886 kb on + strand, within PGA1_c05810at 596.989 kb on + strandat 596.989 kb on + strandat 596.989 kb on + strandat 596.989 kb on + strandat 596.997 kb on - strandat 596.999 kb on + strandat 597.034 kb on + strandat 597.034 kb on + strandat 597.034 kb on + strandat 597.034 kb on + strandat 597.034 kb on + strandat 597.102 kb on + strandat 597.115 kb on + strandat 597.115 kb on + strandat 597.175 kb on + strandat 597.183 kb on - strandat 597.183 kb on - strandat 597.183 kb on - strandat 597.215 kb on + strandat 597.279 kb on + strandat 597.294 kb on - strand, within PGA1_c05820at 597.302 kb on - strand, within PGA1_c05820at 597.302 kb on - strand, within PGA1_c05820at 597.321 kb on + strand, within PGA1_c05820at 597.393 kb on - strand, within PGA1_c05820at 597.404 kb on + strand, within PGA1_c05820at 597.412 kb on - strand, within PGA1_c05820at 597.421 kb on - strand, within PGA1_c05820at 597.438 kb on - strand, within PGA1_c05820at 597.438 kb on - strand, within PGA1_c05820at 597.475 kb on + strand, within PGA1_c05820at 597.483 kb on - strand, within PGA1_c05820at 597.505 kb on - strand, within PGA1_c05820at 597.578 kb on + strand, within PGA1_c05820at 597.584 kb on - strand, within PGA1_c05820at 597.591 kb on - strand, within PGA1_c05820at 597.593 kb on + strand, within PGA1_c05820at 597.593 kb on + strand, within PGA1_c05820at 597.593 kb on + strand, within PGA1_c05820at 597.601 kb on - strand, within PGA1_c05820at 597.603 kb on + strand, within PGA1_c05820at 597.611 kb on - strand, within PGA1_c05820at 597.611 kb on - strand, within PGA1_c05820at 597.612 kb on + strand, within PGA1_c05820at 597.703 kb on + strand, within PGA1_c05820at 597.703 kb on + strand, within PGA1_c05820at 597.711 kb on - strand, within PGA1_c05820at 597.812 kb on - strand, within PGA1_c05820at 597.828 kb on + strand, within PGA1_c05820at 597.828 kb on + strand, within PGA1_c05820at 597.828 kb on + strand, within PGA1_c05820at 597.832 kb on + strand, within PGA1_c05820at 597.838 kb on + strand, within PGA1_c05820at 597.838 kb on + strand, within PGA1_c05820at 597.846 kb on - strand, within PGA1_c05820at 597.883 kb on + strand, within PGA1_c05820at 598.005 kb on + strandat 598.011 kb on + strandat 598.011 kb on + strandat 598.019 kb on - strandat 598.159 kb on + strandat 598.160 kb on - strandat 598.179 kb on + strandat 598.181 kb on + strandat 598.182 kb on - strandat 598.189 kb on - strandat 598.216 kb on - strand, within PGA1_c05830at 598.236 kb on + strand, within PGA1_c05830at 598.244 kb on - strand, within PGA1_c05830at 598.244 kb on - strand, within PGA1_c05830at 598.249 kb on + strand, within PGA1_c05830at 598.251 kb on + strand, within PGA1_c05830at 598.251 kb on + strand, within PGA1_c05830at 598.257 kb on + strand, within PGA1_c05830at 598.257 kb on - strand, within PGA1_c05830at 598.257 kb on - strand, within PGA1_c05830at 598.280 kb on - strand, within PGA1_c05830at 598.285 kb on - strand, within PGA1_c05830at 598.360 kb on + strand, within PGA1_c05830at 598.360 kb on + strand, within PGA1_c05830at 598.368 kb on - strand, within PGA1_c05830at 598.368 kb on - strand, within PGA1_c05830at 598.369 kb on - strand, within PGA1_c05830at 598.426 kb on + strand, within PGA1_c05830at 598.466 kb on - strand, within PGA1_c05830at 598.494 kb on - strandat 598.506 kb on + strandat 598.509 kb on - strandat 598.509 kb on - strandat 598.509 kb on - strandat 598.514 kb on - strandat 598.576 kb on + strandat 598.586 kb on + strandat 598.586 kb on + strandat 598.594 kb on - strandat 598.594 kb on - strandat 598.594 kb on - strandat 598.594 kb on - strandat 598.605 kb on + strandat 598.613 kb on - strandat 598.633 kb on - strandat 598.680 kb on + strandat 598.712 kb on + strandat 598.739 kb on + strandat 598.774 kb on + strand, within PGA1_c05840at 598.782 kb on - strand, within PGA1_c05840at 598.782 kb on - strand, within PGA1_c05840at 598.787 kb on - strand, within PGA1_c05840at 598.787 kb on - strand, within PGA1_c05840at 598.787 kb on - strand, within PGA1_c05840at 598.943 kb on + strandat 599.009 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM
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596,201 + PGA1_c05810 0.28 -0.1
596,201 + PGA1_c05810 0.28 -2.3
596,201 + PGA1_c05810 0.28 +0.1
596,201 + PGA1_c05810 0.28 -1.7
596,201 + PGA1_c05810 0.28 +0.6
596,209 - PGA1_c05810 0.28 +0.0
596,278 - PGA1_c05810 0.34 -0.7
596,299 - PGA1_c05810 0.36 +1.3
596,336 - PGA1_c05810 0.39 +1.5
596,359 - PGA1_c05810 0.40 +0.1
596,359 - PGA1_c05810 0.40 +1.5
596,369 - PGA1_c05810 0.41 -0.0
596,473 + PGA1_c05810 0.50 +0.8
596,507 + PGA1_c05810 0.52 -0.2
596,507 + PGA1_c05810 0.52 -0.0
596,517 + PGA1_c05810 0.53 +0.1
596,565 + PGA1_c05810 0.57 +0.5
596,565 + PGA1_c05810 0.57 -0.3
596,614 + PGA1_c05810 0.61 +1.5
596,614 + PGA1_c05810 0.61 -0.4
596,614 + PGA1_c05810 0.61 +0.2
596,614 + PGA1_c05810 0.61 -0.2
596,622 - PGA1_c05810 0.62 -1.9
596,622 - PGA1_c05810 0.62 +1.4
596,622 - PGA1_c05810 0.62 -0.2
596,622 - PGA1_c05810 0.62 +0.0
596,622 - PGA1_c05810 0.62 -0.3
596,627 - PGA1_c05810 0.62 -1.0
596,714 + PGA1_c05810 0.69 +0.9
596,719 + PGA1_c05810 0.69 -0.5
596,724 + PGA1_c05810 0.70 -0.4
596,727 - PGA1_c05810 0.70 +0.1
596,729 + PGA1_c05810 0.70 +0.6
596,729 + PGA1_c05810 0.70 +0.5
596,729 + PGA1_c05810 0.70 +0.8
596,737 - PGA1_c05810 0.71 -0.0
596,803 + PGA1_c05810 0.76 +1.4
596,803 + PGA1_c05810 0.76 +0.3
596,810 - PGA1_c05810 0.77 -0.9
596,811 - PGA1_c05810 0.77 -0.0
596,849 + PGA1_c05810 0.80 -0.2
596,886 + PGA1_c05810 0.83 +0.6
596,989 + -0.8
596,989 + +1.2
596,989 + -0.6
596,989 + -1.2
596,997 - -1.0
596,999 + -0.6
597,034 + +0.6
597,034 + -0.5
597,034 + -0.6
597,034 + -0.3
597,034 + +0.3
597,102 + -0.0
597,115 + -0.5
597,115 + -0.6
597,175 + +0.1
597,183 - -1.2
597,183 - -1.1
597,183 - -0.9
597,215 + +1.6
597,279 + -0.2
597,294 - PGA1_c05820 0.11 -0.8
597,302 - PGA1_c05820 0.12 +0.2
597,302 - PGA1_c05820 0.12 -1.6
597,321 + PGA1_c05820 0.14 -0.4
597,393 - PGA1_c05820 0.22 -1.2
597,404 + PGA1_c05820 0.23 -1.4
597,412 - PGA1_c05820 0.24 +0.6
597,421 - PGA1_c05820 0.25 -1.2
597,438 - PGA1_c05820 0.27 -0.0
597,438 - PGA1_c05820 0.27 -0.8
597,475 + PGA1_c05820 0.32 -0.6
597,483 - PGA1_c05820 0.32 +1.0
597,505 - PGA1_c05820 0.35 -1.8
597,578 + PGA1_c05820 0.43 -1.6
597,584 - PGA1_c05820 0.44 +1.6
597,591 - PGA1_c05820 0.45 -2.3
597,593 + PGA1_c05820 0.45 -1.8
597,593 + PGA1_c05820 0.45 -1.4
597,593 + PGA1_c05820 0.45 -1.0
597,601 - PGA1_c05820 0.46 -0.0
597,603 + PGA1_c05820 0.46 -0.8
597,611 - PGA1_c05820 0.47 -0.4
597,611 - PGA1_c05820 0.47 -1.6
597,612 + PGA1_c05820 0.47 -1.2
597,703 + PGA1_c05820 0.58 -0.8
597,703 + PGA1_c05820 0.58 -1.9
597,711 - PGA1_c05820 0.59 +0.8
597,812 - PGA1_c05820 0.70 -1.2
597,828 + PGA1_c05820 0.72 +0.8
597,828 + PGA1_c05820 0.72 +0.7
597,828 + PGA1_c05820 0.72 +0.2
597,832 + PGA1_c05820 0.72 -0.6
597,838 + PGA1_c05820 0.73 +0.6
597,838 + PGA1_c05820 0.73 -1.6
597,846 - PGA1_c05820 0.74 -1.0
597,883 + PGA1_c05820 0.78 -1.2
598,005 + -0.0
598,011 + +2.0
598,011 + -1.6
598,019 - +0.8
598,159 + +1.8
598,160 - +0.3
598,179 + +0.5
598,181 + +1.1
598,182 - -0.1
598,189 - +0.4
598,216 - PGA1_c05830 0.11 +0.1
598,236 + PGA1_c05830 0.17 +0.4
598,244 - PGA1_c05830 0.19 -1.0
598,244 - PGA1_c05830 0.19 +1.1
598,249 + PGA1_c05830 0.21 +1.2
598,251 + PGA1_c05830 0.21 +2.2
598,251 + PGA1_c05830 0.21 -0.9
598,257 + PGA1_c05830 0.23 +0.1
598,257 - PGA1_c05830 0.23 -1.0
598,257 - PGA1_c05830 0.23 +0.7
598,280 - PGA1_c05830 0.30 -0.5
598,285 - PGA1_c05830 0.31 -2.4
598,360 + PGA1_c05830 0.53 -1.3
598,360 + PGA1_c05830 0.53 +1.1
598,368 - PGA1_c05830 0.55 +0.5
598,368 - PGA1_c05830 0.55 +0.3
598,369 - PGA1_c05830 0.55 -0.2
598,426 + PGA1_c05830 0.72 +0.4
598,466 - PGA1_c05830 0.83 -0.0
598,494 - +0.6
598,506 + -0.6
598,509 - +0.8
598,509 - -0.0
598,509 - +0.4
598,514 - -0.6
598,576 + +0.2
598,586 + -2.0
598,586 + -0.5
598,594 - -0.2
598,594 - -2.1
598,594 - -2.1
598,594 - +0.5
598,605 + -1.6
598,613 - +0.6
598,633 - +0.2
598,680 + -1.2
598,712 + -0.2
598,739 + +0.0
598,774 + PGA1_c05840 0.21 +0.3
598,782 - PGA1_c05840 0.24 -0.3
598,782 - PGA1_c05840 0.24 -0.8
598,787 - PGA1_c05840 0.26 +0.4
598,787 - PGA1_c05840 0.26 +1.0
598,787 - PGA1_c05840 0.26 -1.9
598,943 + +0.1
599,009 - +0.3

Or see this region's nucleotide sequence