Experiment: Carbon source L-Ornithine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00390 and PGA1_65p00400 are separated by 148 nucleotides PGA1_65p00400 and PGA1_65p00410 are separated by 17 nucleotides PGA1_65p00410 and PGA1_65p00420 are separated by 116 nucleotides
PGA1_65p00390: PGA1_65p00390 - UDP-galactopyranose mutase Glf, at 53,848 to 55,011
_65p00390
PGA1_65p00400: PGA1_65p00400 - ABC transporter, ATP-binding protein, at 55,160 to 55,816
_65p00400
PGA1_65p00410: PGA1_65p00410 - putative olysaccharide export protein, at 55,834 to 57,264
_65p00410
PGA1_65p00420: PGA1_65p00420 - putative ABC type transporter, at 57,381 to 58,289
_65p00420
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -2
-1
0
1 at 54.896 kb on - strand at 54.912 kb on + strand at 54.945 kb on - strand at 54.992 kb on + strand at 55.006 kb on + strand at 55.028 kb on - strand at 55.202 kb on - strand at 55.227 kb on + strand, within PGA1_65p00400 at 55.568 kb on + strand, within PGA1_65p00400 at 55.664 kb on - strand, within PGA1_65p00400 at 55.668 kb on + strand, within PGA1_65p00400 at 55.890 kb on - strand at 55.911 kb on - strand at 55.992 kb on - strand, within PGA1_65p00410 at 56.313 kb on - strand, within PGA1_65p00410 at 56.593 kb on + strand, within PGA1_65p00410 at 56.641 kb on - strand, within PGA1_65p00410 at 56.820 kb on + strand, within PGA1_65p00410 at 56.829 kb on - strand, within PGA1_65p00410 at 57.037 kb on - strand, within PGA1_65p00410 at 57.119 kb on + strand, within PGA1_65p00410 at 57.224 kb on - strand at 57.295 kb on + strand at 57.295 kb on + strand at 57.419 kb on - strand at 57.451 kb on + strand at 57.454 kb on - strand at 57.485 kb on - strand, within PGA1_65p00420 at 57.634 kb on - strand, within PGA1_65p00420 at 57.748 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 58.026 kb on + strand, within PGA1_65p00420 at 58.034 kb on - strand, within PGA1_65p00420 at 58.106 kb on + strand, within PGA1_65p00420 at 58.186 kb on - strand, within PGA1_65p00420 at 58.196 kb on - strand, within PGA1_65p00420
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source L-Ornithine 10 mM remove 54,896 - -2.0 54,912 + -0.4 54,945 - +0.1 54,992 + -0.1 55,006 + -0.2 55,028 - +1.1 55,202 - -0.4 55,227 + PGA1_65p00400 0.10 -1.3 55,568 + PGA1_65p00400 0.62 -0.2 55,664 - PGA1_65p00400 0.77 -0.4 55,668 + PGA1_65p00400 0.77 -1.0 55,890 - -1.0 55,911 - -0.4 55,992 - PGA1_65p00410 0.11 -0.4 56,313 - PGA1_65p00410 0.33 -1.0 56,593 + PGA1_65p00410 0.53 +1.1 56,641 - PGA1_65p00410 0.56 -1.8 56,820 + PGA1_65p00410 0.69 -1.7 56,829 - PGA1_65p00410 0.70 -0.7 57,037 - PGA1_65p00410 0.84 +0.1 57,119 + PGA1_65p00410 0.90 +0.5 57,224 - -0.4 57,295 + -1.2 57,295 + -1.3 57,419 - +0.6 57,451 + -1.8 57,454 - -0.0 57,485 - PGA1_65p00420 0.11 -0.9 57,634 - PGA1_65p00420 0.28 +0.3 57,748 - PGA1_65p00420 0.40 -1.0 57,784 - PGA1_65p00420 0.44 +1.1 57,784 - PGA1_65p00420 0.44 -1.9 58,026 + PGA1_65p00420 0.71 -2.0 58,034 - PGA1_65p00420 0.72 +1.1 58,106 + PGA1_65p00420 0.80 -0.7 58,186 - PGA1_65p00420 0.89 -2.4 58,196 - PGA1_65p00420 0.90 -1.0
Or see this region's nucleotide sequence