Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21810 and ABZR87_RS21815 overlap by 4 nucleotides ABZR87_RS21815 and ABZR87_RS21820 overlap by 4 nucleotides ABZR87_RS21820 and ABZR87_RS21825 are separated by 117 nucleotides ABZR87_RS21825 and ABZR87_RS21830 overlap by 17 nucleotides
ABZR87_RS21810: ABZR87_RS21810 - enoyl-CoA hydratase, at 1,277,386 to 1,278,174
_RS21810
ABZR87_RS21815: ABZR87_RS21815 - MarR family winged helix-turn-helix transcriptional regulator, at 1,278,171 to 1,278,605
_RS21815
ABZR87_RS21820: ABZR87_RS21820 - alpha/beta hydrolase, at 1,278,602 to 1,279,489
_RS21820
ABZR87_RS21825: ABZR87_RS21825 - metalloregulator ArsR/SmtB family transcription factor, at 1,279,607 to 1,279,963
_RS21825
ABZR87_RS21830: ABZR87_RS21830 - SRPBCC family protein, at 1,279,947 to 1,280,909
_RS21830
Position (kb) 1278
1279
1280 Strain fitness (log2 ratio) -1
0
1
2
3 at 1277.612 kb on + strand, within ABZR87_RS21810 at 1277.613 kb on - strand, within ABZR87_RS21810 at 1278.081 kb on - strand, within ABZR87_RS21810 at 1278.249 kb on - strand, within ABZR87_RS21815 at 1278.577 kb on + strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.578 kb on - strand at 1278.832 kb on - strand, within ABZR87_RS21820 at 1278.901 kb on - strand, within ABZR87_RS21820 at 1278.987 kb on + strand, within ABZR87_RS21820 at 1278.987 kb on + strand, within ABZR87_RS21820 at 1278.987 kb on + strand, within ABZR87_RS21820 at 1278.988 kb on - strand, within ABZR87_RS21820 at 1279.303 kb on - strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.308 kb on + strand, within ABZR87_RS21820 at 1279.309 kb on - strand, within ABZR87_RS21820 at 1279.309 kb on - strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.359 kb on + strand, within ABZR87_RS21820 at 1279.360 kb on - strand, within ABZR87_RS21820 at 1279.360 kb on - strand, within ABZR87_RS21820 at 1279.360 kb on - strand, within ABZR87_RS21820 at 1279.360 kb on - strand, within ABZR87_RS21820 at 1279.577 kb on + strand at 1279.613 kb on - strand at 1279.913 kb on + strand, within ABZR87_RS21825 at 1279.913 kb on + strand, within ABZR87_RS21825 at 1279.914 kb on - strand, within ABZR87_RS21825 at 1279.914 kb on - strand, within ABZR87_RS21825 at 1279.914 kb on - strand, within ABZR87_RS21825
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 1,277,612 + ABZR87_RS21810 0.29 +2.3 1,277,613 - ABZR87_RS21810 0.29 +0.1 1,278,081 - ABZR87_RS21810 0.88 -0.0 1,278,249 - ABZR87_RS21815 0.18 -1.1 1,278,577 + -0.6 1,278,578 - -0.9 1,278,578 - -0.3 1,278,578 - +2.1 1,278,578 - -0.7 1,278,578 - +1.3 1,278,578 - +0.9 1,278,832 - ABZR87_RS21820 0.26 -0.6 1,278,901 - ABZR87_RS21820 0.34 +0.7 1,278,987 + ABZR87_RS21820 0.43 +0.3 1,278,987 + ABZR87_RS21820 0.43 +0.9 1,278,987 + ABZR87_RS21820 0.43 +0.4 1,278,988 - ABZR87_RS21820 0.43 +1.7 1,279,303 - ABZR87_RS21820 0.79 -0.3 1,279,308 + ABZR87_RS21820 0.80 +1.6 1,279,308 + ABZR87_RS21820 0.80 +0.7 1,279,308 + ABZR87_RS21820 0.80 +0.2 1,279,308 + ABZR87_RS21820 0.80 +0.7 1,279,308 + ABZR87_RS21820 0.80 +0.1 1,279,309 - ABZR87_RS21820 0.80 -0.6 1,279,309 - ABZR87_RS21820 0.80 -1.4 1,279,359 + ABZR87_RS21820 0.85 +0.5 1,279,359 + ABZR87_RS21820 0.85 +1.6 1,279,359 + ABZR87_RS21820 0.85 +0.2 1,279,359 + ABZR87_RS21820 0.85 +0.1 1,279,359 + ABZR87_RS21820 0.85 -0.5 1,279,359 + ABZR87_RS21820 0.85 -0.4 1,279,359 + ABZR87_RS21820 0.85 -0.4 1,279,360 - ABZR87_RS21820 0.85 +1.2 1,279,360 - ABZR87_RS21820 0.85 -0.8 1,279,360 - ABZR87_RS21820 0.85 +1.6 1,279,360 - ABZR87_RS21820 0.85 +0.3 1,279,577 + +0.7 1,279,613 - -0.4 1,279,913 + ABZR87_RS21825 0.86 +3.2 1,279,913 + ABZR87_RS21825 0.86 -0.5 1,279,914 - ABZR87_RS21825 0.86 -0.3 1,279,914 - ABZR87_RS21825 0.86 -1.3 1,279,914 - ABZR87_RS21825 0.86 -1.7
Or see this region's nucleotide sequence