Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18285 and ABZR87_RS18290 are separated by 40 nucleotides ABZR87_RS18290 and ABZR87_RS18295 are separated by 72 nucleotides ABZR87_RS18295 and ABZR87_RS18300 are separated by 177 nucleotides
ABZR87_RS18285: ABZR87_RS18285 - helix-turn-helix domain-containing protein, at 471,995 to 472,981
_RS18285
ABZR87_RS18290: ABZR87_RS18290 - glycine zipper 2TM domain-containing protein, at 473,022 to 473,204
_RS18290
ABZR87_RS18295: ABZR87_RS18295 - YggT family protein, at 473,277 to 473,837
_RS18295
ABZR87_RS18300: ABZR87_RS18300 - YbhB/YbcL family Raf kinase inhibitor-like protein, at 474,015 to 474,578
_RS18300
Position (kb) 473
474 Strain fitness (log2 ratio) -2
-1
0
1 at 472.038 kb on + strand at 472.038 kb on + strand at 472.038 kb on + strand at 472.039 kb on - strand at 472.039 kb on - strand at 472.046 kb on - strand at 472.121 kb on + strand, within ABZR87_RS18285 at 472.121 kb on + strand, within ABZR87_RS18285 at 472.121 kb on + strand, within ABZR87_RS18285 at 472.121 kb on + strand, within ABZR87_RS18285 at 472.122 kb on - strand, within ABZR87_RS18285 at 472.122 kb on - strand, within ABZR87_RS18285 at 472.122 kb on - strand, within ABZR87_RS18285 at 472.259 kb on - strand, within ABZR87_RS18285 at 472.259 kb on - strand, within ABZR87_RS18285 at 472.307 kb on + strand, within ABZR87_RS18285 at 472.307 kb on + strand, within ABZR87_RS18285 at 472.307 kb on + strand, within ABZR87_RS18285 at 472.307 kb on + strand, within ABZR87_RS18285 at 472.308 kb on - strand, within ABZR87_RS18285 at 472.440 kb on + strand, within ABZR87_RS18285 at 472.441 kb on - strand, within ABZR87_RS18285 at 472.441 kb on - strand, within ABZR87_RS18285 at 472.463 kb on + strand, within ABZR87_RS18285 at 472.464 kb on - strand, within ABZR87_RS18285 at 472.464 kb on - strand, within ABZR87_RS18285 at 472.464 kb on - strand, within ABZR87_RS18285 at 472.625 kb on + strand, within ABZR87_RS18285 at 472.625 kb on + strand, within ABZR87_RS18285 at 472.625 kb on + strand, within ABZR87_RS18285 at 472.626 kb on - strand, within ABZR87_RS18285 at 472.626 kb on - strand, within ABZR87_RS18285 at 472.626 kb on - strand, within ABZR87_RS18285 at 472.829 kb on + strand, within ABZR87_RS18285 at 472.934 kb on + strand at 472.934 kb on + strand at 472.934 kb on + strand at 472.935 kb on - strand at 472.935 kb on - strand at 472.935 kb on - strand at 472.935 kb on - strand at 472.955 kb on + strand at 473.023 kb on + strand at 473.023 kb on + strand at 473.024 kb on - strand at 473.024 kb on - strand at 473.024 kb on - strand at 473.070 kb on + strand, within ABZR87_RS18290 at 473.071 kb on - strand, within ABZR87_RS18290 at 473.071 kb on - strand, within ABZR87_RS18290 at 473.071 kb on - strand, within ABZR87_RS18290 at 473.178 kb on + strand, within ABZR87_RS18290 at 473.179 kb on - strand, within ABZR87_RS18290 at 473.179 kb on - strand, within ABZR87_RS18290 at 473.245 kb on + strand at 473.246 kb on - strand at 473.246 kb on - strand at 473.605 kb on + strand, within ABZR87_RS18295 at 473.606 kb on - strand, within ABZR87_RS18295 at 473.606 kb on - strand, within ABZR87_RS18295 at 473.606 kb on - strand, within ABZR87_RS18295 at 473.623 kb on + strand, within ABZR87_RS18295 at 473.624 kb on - strand, within ABZR87_RS18295 at 473.652 kb on - strand, within ABZR87_RS18295 at 473.653 kb on + strand, within ABZR87_RS18295 at 473.653 kb on + strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.654 kb on - strand, within ABZR87_RS18295 at 473.826 kb on - strand at 473.971 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 472,038 + +0.9 472,038 + -0.5 472,038 + +0.7 472,039 - -0.7 472,039 - +0.1 472,046 - -1.3 472,121 + ABZR87_RS18285 0.13 -0.1 472,121 + ABZR87_RS18285 0.13 -0.1 472,121 + ABZR87_RS18285 0.13 -0.4 472,121 + ABZR87_RS18285 0.13 +0.1 472,122 - ABZR87_RS18285 0.13 +0.2 472,122 - ABZR87_RS18285 0.13 +0.2 472,122 - ABZR87_RS18285 0.13 +0.6 472,259 - ABZR87_RS18285 0.27 +1.3 472,259 - ABZR87_RS18285 0.27 -0.2 472,307 + ABZR87_RS18285 0.32 -0.5 472,307 + ABZR87_RS18285 0.32 +0.0 472,307 + ABZR87_RS18285 0.32 +0.2 472,307 + ABZR87_RS18285 0.32 -0.5 472,308 - ABZR87_RS18285 0.32 -0.5 472,440 + ABZR87_RS18285 0.45 -1.8 472,441 - ABZR87_RS18285 0.45 +0.5 472,441 - ABZR87_RS18285 0.45 -0.3 472,463 + ABZR87_RS18285 0.47 +0.7 472,464 - ABZR87_RS18285 0.48 -1.0 472,464 - ABZR87_RS18285 0.48 -0.4 472,464 - ABZR87_RS18285 0.48 +0.2 472,625 + ABZR87_RS18285 0.64 -0.2 472,625 + ABZR87_RS18285 0.64 -0.5 472,625 + ABZR87_RS18285 0.64 +1.3 472,626 - ABZR87_RS18285 0.64 +1.2 472,626 - ABZR87_RS18285 0.64 +0.9 472,626 - ABZR87_RS18285 0.64 +0.2 472,829 + ABZR87_RS18285 0.84 -0.1 472,934 + -0.1 472,934 + +0.3 472,934 + +0.0 472,935 - -2.6 472,935 - -0.6 472,935 - -2.5 472,935 - +1.3 472,955 + +0.6 473,023 + +0.4 473,023 + -0.5 473,024 - +0.6 473,024 - +0.5 473,024 - +0.5 473,070 + ABZR87_RS18290 0.26 -0.1 473,071 - ABZR87_RS18290 0.27 -1.9 473,071 - ABZR87_RS18290 0.27 -0.9 473,071 - ABZR87_RS18290 0.27 -1.1 473,178 + ABZR87_RS18290 0.85 -0.4 473,179 - ABZR87_RS18290 0.86 -0.5 473,179 - ABZR87_RS18290 0.86 -0.7 473,245 + -0.4 473,246 - -0.9 473,246 - -0.7 473,605 + ABZR87_RS18295 0.58 +0.4 473,606 - ABZR87_RS18295 0.59 -0.6 473,606 - ABZR87_RS18295 0.59 -0.4 473,606 - ABZR87_RS18295 0.59 +1.5 473,623 + ABZR87_RS18295 0.62 +0.1 473,624 - ABZR87_RS18295 0.62 -0.2 473,652 - ABZR87_RS18295 0.67 +0.8 473,653 + ABZR87_RS18295 0.67 -0.6 473,653 + ABZR87_RS18295 0.67 +0.5 473,654 - ABZR87_RS18295 0.67 -1.7 473,654 - ABZR87_RS18295 0.67 +0.7 473,654 - ABZR87_RS18295 0.67 -0.5 473,654 - ABZR87_RS18295 0.67 -0.2 473,654 - ABZR87_RS18295 0.67 -1.5 473,826 - -2.1 473,971 + +1.3
Or see this region's nucleotide sequence