Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17645

Experiment: Ra3_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17635 and ABZR87_RS17640 are separated by 72 nucleotidesABZR87_RS17640 and ABZR87_RS17645 are separated by 63 nucleotidesABZR87_RS17645 and ABZR87_RS17650 are separated by 87 nucleotidesABZR87_RS17650 and ABZR87_RS17655 are separated by 87 nucleotides ABZR87_RS17635: ABZR87_RS17635 - MFS transporter, at 321,378 to 322,823 _RS17635 ABZR87_RS17640: ABZR87_RS17640 - oxidoreductase, at 322,896 to 323,702 _RS17640 ABZR87_RS17645: ABZR87_RS17645 - TolC family protein, at 323,766 to 325,226 _RS17645 ABZR87_RS17650: ABZR87_RS17650 - TetR/AcrR family transcriptional regulator, at 325,314 to 325,928 _RS17650 ABZR87_RS17655: ABZR87_RS17655 - efflux RND transporter periplasmic adaptor subunit, at 326,016 to 327,131 _RS17655 Position (kb) 323 324 325 326Strain fitness (log2 ratio) -2 -1 0 1 2at 322.869 kb on + strandat 323.270 kb on - strand, within ABZR87_RS17640at 323.270 kb on - strand, within ABZR87_RS17640at 323.281 kb on + strand, within ABZR87_RS17640at 323.281 kb on + strand, within ABZR87_RS17640at 323.281 kb on + strand, within ABZR87_RS17640at 323.281 kb on + strand, within ABZR87_RS17640at 323.281 kb on + strand, within ABZR87_RS17640at 323.282 kb on - strand, within ABZR87_RS17640at 323.282 kb on - strand, within ABZR87_RS17640at 323.282 kb on - strand, within ABZR87_RS17640at 323.282 kb on - strand, within ABZR87_RS17640at 323.316 kb on - strand, within ABZR87_RS17640at 323.454 kb on + strand, within ABZR87_RS17640at 324.266 kb on - strand, within ABZR87_RS17645at 324.266 kb on - strand, within ABZR87_RS17645at 324.266 kb on - strand, within ABZR87_RS17645at 324.269 kb on - strand, within ABZR87_RS17645at 324.616 kb on - strand, within ABZR87_RS17645at 324.616 kb on - strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.667 kb on + strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.668 kb on - strand, within ABZR87_RS17645at 324.669 kb on + strand, within ABZR87_RS17645at 324.733 kb on + strand, within ABZR87_RS17645at 324.733 kb on + strand, within ABZR87_RS17645at 324.826 kb on + strand, within ABZR87_RS17645at 324.886 kb on + strand, within ABZR87_RS17645at 324.887 kb on - strand, within ABZR87_RS17645at 324.887 kb on - strand, within ABZR87_RS17645at 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.153 kb on + strandat 325.154 kb on - strandat 325.154 kb on - strandat 325.154 kb on - strandat 325.206 kb on - strandat 325.206 kb on - strandat 325.301 kb on + strandat 325.410 kb on + strand, within ABZR87_RS17650at 325.470 kb on + strand, within ABZR87_RS17650at 325.470 kb on + strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.471 kb on - strand, within ABZR87_RS17650at 325.476 kb on + strand, within ABZR87_RS17650at 325.476 kb on + strand, within ABZR87_RS17650at 325.710 kb on + strand, within ABZR87_RS17650at 325.815 kb on + strand, within ABZR87_RS17650at 325.815 kb on + strand, within ABZR87_RS17650at 325.833 kb on + strand, within ABZR87_RS17650at 325.833 kb on + strand, within ABZR87_RS17650at 325.834 kb on - strand, within ABZR87_RS17650at 325.869 kb on + strandat 325.869 kb on + strandat 325.870 kb on - strandat 325.870 kb on - strandat 326.036 kb on + strandat 326.037 kb on - strandat 326.042 kb on + strandat 326.042 kb on + strandat 326.043 kb on - strandat 326.043 kb on - strandat 326.043 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_1
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322,869 + -2.7
323,270 - ABZR87_RS17640 0.46 -0.3
323,270 - ABZR87_RS17640 0.46 -1.0
323,281 + ABZR87_RS17640 0.48 -0.1
323,281 + ABZR87_RS17640 0.48 -0.1
323,281 + ABZR87_RS17640 0.48 -0.4
323,281 + ABZR87_RS17640 0.48 +0.4
323,281 + ABZR87_RS17640 0.48 -1.0
323,282 - ABZR87_RS17640 0.48 -0.4
323,282 - ABZR87_RS17640 0.48 +0.3
323,282 - ABZR87_RS17640 0.48 +1.0
323,282 - ABZR87_RS17640 0.48 -0.4
323,316 - ABZR87_RS17640 0.52 +0.0
323,454 + ABZR87_RS17640 0.69 +0.7
324,266 - ABZR87_RS17645 0.34 +0.7
324,266 - ABZR87_RS17645 0.34 -0.2
324,266 - ABZR87_RS17645 0.34 +1.8
324,269 - ABZR87_RS17645 0.34 -0.1
324,616 - ABZR87_RS17645 0.58 +0.6
324,616 - ABZR87_RS17645 0.58 +0.2
324,667 + ABZR87_RS17645 0.62 +0.8
324,667 + ABZR87_RS17645 0.62 -1.9
324,667 + ABZR87_RS17645 0.62 -1.0
324,667 + ABZR87_RS17645 0.62 +0.8
324,667 + ABZR87_RS17645 0.62 +0.3
324,667 + ABZR87_RS17645 0.62 -1.9
324,667 + ABZR87_RS17645 0.62 +2.3
324,667 + ABZR87_RS17645 0.62 +1.8
324,667 + ABZR87_RS17645 0.62 +0.6
324,668 - ABZR87_RS17645 0.62 +1.2
324,668 - ABZR87_RS17645 0.62 -2.1
324,668 - ABZR87_RS17645 0.62 -1.2
324,668 - ABZR87_RS17645 0.62 -0.9
324,668 - ABZR87_RS17645 0.62 -1.2
324,668 - ABZR87_RS17645 0.62 +0.9
324,669 + ABZR87_RS17645 0.62 +0.6
324,733 + ABZR87_RS17645 0.66 +0.8
324,733 + ABZR87_RS17645 0.66 +0.7
324,826 + ABZR87_RS17645 0.73 -0.1
324,886 + ABZR87_RS17645 0.77 +0.3
324,887 - ABZR87_RS17645 0.77 -0.5
324,887 - ABZR87_RS17645 0.77 +0.3
325,153 + -0.8
325,153 + +0.6
325,153 + -0.2
325,153 + -1.0
325,153 + -0.2
325,153 + +2.3
325,153 + -1.4
325,154 - +1.3
325,154 - -0.6
325,154 - +0.8
325,206 - -0.8
325,206 - +0.2
325,301 + +0.7
325,410 + ABZR87_RS17650 0.16 +1.4
325,470 + ABZR87_RS17650 0.25 +0.6
325,470 + ABZR87_RS17650 0.25 +0.7
325,471 - ABZR87_RS17650 0.26 +0.6
325,471 - ABZR87_RS17650 0.26 +1.0
325,471 - ABZR87_RS17650 0.26 +1.8
325,471 - ABZR87_RS17650 0.26 +0.6
325,471 - ABZR87_RS17650 0.26 -0.2
325,471 - ABZR87_RS17650 0.26 +1.7
325,476 + ABZR87_RS17650 0.26 +0.8
325,476 + ABZR87_RS17650 0.26 -0.2
325,710 + ABZR87_RS17650 0.64 +1.4
325,815 + ABZR87_RS17650 0.81 +1.2
325,815 + ABZR87_RS17650 0.81 +0.8
325,833 + ABZR87_RS17650 0.84 +0.1
325,833 + ABZR87_RS17650 0.84 +1.5
325,834 - ABZR87_RS17650 0.85 +2.6
325,869 + +0.1
325,869 + +0.4
325,870 - +1.3
325,870 - +1.4
326,036 + -0.8
326,037 - +1.3
326,042 + +0.4
326,042 + +0.1
326,043 - -1.1
326,043 - -1.1
326,043 - +2.3

Or see this region's nucleotide sequence