Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS14695 and ABZR87_RS14700 are separated by 93 nucleotides ABZR87_RS14700 and ABZR87_RS14705 are separated by 80 nucleotides
ABZR87_RS14695: ABZR87_RS14695 - LysR family transcriptional regulator, at 3,103,352 to 3,104,296
_RS14695
ABZR87_RS14700: ABZR87_RS14700 - PaaI family thioesterase, at 3,104,390 to 3,104,827
_RS14700
ABZR87_RS14705: ABZR87_RS14705 - acyl-CoA dehydrogenase family protein, at 3,104,908 to 3,106,167
_RS14705
Position (kb)
3104
3105 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3103.415 kb on + strand at 3103.415 kb on + strand at 3103.415 kb on + strand at 3103.415 kb on + strand at 3103.416 kb on - strand at 3103.416 kb on - strand at 3103.416 kb on - strand at 3103.416 kb on - strand at 3103.470 kb on + strand, within ABZR87_RS14695 at 3103.476 kb on + strand, within ABZR87_RS14695 at 3103.476 kb on + strand, within ABZR87_RS14695 at 3103.476 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.706 kb on + strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.707 kb on - strand, within ABZR87_RS14695 at 3103.725 kb on + strand, within ABZR87_RS14695 at 3104.242 kb on + strand at 3104.242 kb on + strand at 3104.243 kb on - strand at 3104.244 kb on + strand at 3104.244 kb on + strand at 3104.244 kb on + strand at 3104.244 kb on + strand at 3104.244 kb on + strand at 3104.244 kb on + strand at 3104.244 kb on + strand at 3104.244 kb on + strand at 3104.244 kb on + strand at 3104.244 kb on + strand at 3104.245 kb on - strand at 3104.245 kb on - strand at 3104.245 kb on - strand at 3104.245 kb on - strand at 3104.288 kb on + strand at 3104.290 kb on + strand at 3104.290 kb on + strand at 3104.290 kb on + strand at 3104.290 kb on + strand at 3104.291 kb on - strand at 3104.291 kb on - strand at 3104.340 kb on + strand at 3104.353 kb on - strand at 3104.477 kb on + strand, within ABZR87_RS14700 at 3104.478 kb on - strand, within ABZR87_RS14700 at 3104.478 kb on - strand, within ABZR87_RS14700 at 3104.520 kb on + strand, within ABZR87_RS14700 at 3104.520 kb on + strand, within ABZR87_RS14700 at 3104.520 kb on + strand, within ABZR87_RS14700 at 3104.893 kb on + strand at 3104.893 kb on + strand at 3104.893 kb on + strand at 3104.894 kb on - strand at 3104.894 kb on - strand at 3104.894 kb on - strand at 3104.894 kb on - strand at 3104.980 kb on + strand at 3104.981 kb on - strand at 3104.981 kb on - strand at 3105.253 kb on + strand, within ABZR87_RS14705 at 3105.398 kb on - strand, within ABZR87_RS14705 at 3105.398 kb on - strand, within ABZR87_RS14705 at 3105.398 kb on - strand, within ABZR87_RS14705 at 3105.457 kb on + strand, within ABZR87_RS14705 at 3105.458 kb on - strand, within ABZR87_RS14705 at 3105.458 kb on - strand, within ABZR87_RS14705 at 3105.458 kb on - strand, within ABZR87_RS14705
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 3,103,415 + -0.9 3,103,415 + -0.2 3,103,415 + -0.1 3,103,415 + -0.1 3,103,416 - +0.7 3,103,416 - -0.9 3,103,416 - +0.1 3,103,416 - -1.2 3,103,470 + ABZR87_RS14695 0.12 -1.3 3,103,476 + ABZR87_RS14695 0.13 +0.1 3,103,476 + ABZR87_RS14695 0.13 -0.5 3,103,476 + ABZR87_RS14695 0.13 +0.7 3,103,706 + ABZR87_RS14695 0.37 +0.7 3,103,706 + ABZR87_RS14695 0.37 -0.6 3,103,706 + ABZR87_RS14695 0.37 -1.2 3,103,706 + ABZR87_RS14695 0.37 +0.0 3,103,706 + ABZR87_RS14695 0.37 -0.4 3,103,706 + ABZR87_RS14695 0.37 -1.5 3,103,706 + ABZR87_RS14695 0.37 +0.2 3,103,706 + ABZR87_RS14695 0.37 -0.5 3,103,706 + ABZR87_RS14695 0.37 +0.4 3,103,706 + ABZR87_RS14695 0.37 -0.8 3,103,707 - ABZR87_RS14695 0.38 +3.4 3,103,707 - ABZR87_RS14695 0.38 -0.7 3,103,707 - ABZR87_RS14695 0.38 -0.2 3,103,707 - ABZR87_RS14695 0.38 -2.4 3,103,707 - ABZR87_RS14695 0.38 -0.5 3,103,707 - ABZR87_RS14695 0.38 +0.3 3,103,707 - ABZR87_RS14695 0.38 -0.4 3,103,707 - ABZR87_RS14695 0.38 +0.9 3,103,707 - ABZR87_RS14695 0.38 +0.1 3,103,707 - ABZR87_RS14695 0.38 -1.3 3,103,707 - ABZR87_RS14695 0.38 -0.7 3,103,707 - ABZR87_RS14695 0.38 -0.6 3,103,707 - ABZR87_RS14695 0.38 +1.3 3,103,707 - ABZR87_RS14695 0.38 +1.1 3,103,707 - ABZR87_RS14695 0.38 +0.1 3,103,707 - ABZR87_RS14695 0.38 -0.2 3,103,725 + ABZR87_RS14695 0.39 -0.5 3,104,242 + -1.5 3,104,242 + +0.5 3,104,243 - +1.2 3,104,244 + -0.7 3,104,244 + -0.2 3,104,244 + -0.3 3,104,244 + -0.3 3,104,244 + -0.7 3,104,244 + -1.8 3,104,244 + -0.8 3,104,244 + -0.3 3,104,244 + -0.5 3,104,244 + -0.0 3,104,245 - -0.3 3,104,245 - +0.1 3,104,245 - -1.2 3,104,245 - -0.9 3,104,288 + +1.6 3,104,290 + -0.9 3,104,290 + +0.5 3,104,290 + -1.3 3,104,290 + -1.2 3,104,291 - +0.1 3,104,291 - +0.5 3,104,340 + -0.9 3,104,353 - -0.3 3,104,477 + ABZR87_RS14700 0.20 -1.5 3,104,478 - ABZR87_RS14700 0.20 -1.3 3,104,478 - ABZR87_RS14700 0.20 -0.3 3,104,520 + ABZR87_RS14700 0.30 -0.4 3,104,520 + ABZR87_RS14700 0.30 -0.2 3,104,520 + ABZR87_RS14700 0.30 -1.1 3,104,893 + -0.1 3,104,893 + +0.4 3,104,893 + -1.6 3,104,894 - +1.2 3,104,894 - -0.8 3,104,894 - +0.2 3,104,894 - +0.6 3,104,980 + +0.8 3,104,981 - -0.7 3,104,981 - -0.0 3,105,253 + ABZR87_RS14705 0.27 -0.7 3,105,398 - ABZR87_RS14705 0.39 -1.5 3,105,398 - ABZR87_RS14705 0.39 -0.3 3,105,398 - ABZR87_RS14705 0.39 -0.8 3,105,457 + ABZR87_RS14705 0.44 -0.9 3,105,458 - ABZR87_RS14705 0.44 +1.4 3,105,458 - ABZR87_RS14705 0.44 -0.5 3,105,458 - ABZR87_RS14705 0.44 +0.8
Or see this region's nucleotide sequence