Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS14700

Experiment: Ra3_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS14695 and ABZR87_RS14700 are separated by 93 nucleotidesABZR87_RS14700 and ABZR87_RS14705 are separated by 80 nucleotides ABZR87_RS14695: ABZR87_RS14695 - LysR family transcriptional regulator, at 3,103,352 to 3,104,296 _RS14695 ABZR87_RS14700: ABZR87_RS14700 - PaaI family thioesterase, at 3,104,390 to 3,104,827 _RS14700 ABZR87_RS14705: ABZR87_RS14705 - acyl-CoA dehydrogenase family protein, at 3,104,908 to 3,106,167 _RS14705 Position (kb) 3104 3105Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3103.415 kb on + strandat 3103.415 kb on + strandat 3103.415 kb on + strandat 3103.415 kb on + strandat 3103.416 kb on - strandat 3103.416 kb on - strandat 3103.416 kb on - strandat 3103.416 kb on - strandat 3103.470 kb on + strand, within ABZR87_RS14695at 3103.476 kb on + strand, within ABZR87_RS14695at 3103.476 kb on + strand, within ABZR87_RS14695at 3103.476 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.706 kb on + strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.707 kb on - strand, within ABZR87_RS14695at 3103.725 kb on + strand, within ABZR87_RS14695at 3104.242 kb on + strandat 3104.242 kb on + strandat 3104.243 kb on - strandat 3104.244 kb on + strandat 3104.244 kb on + strandat 3104.244 kb on + strandat 3104.244 kb on + strandat 3104.244 kb on + strandat 3104.244 kb on + strandat 3104.244 kb on + strandat 3104.244 kb on + strandat 3104.244 kb on + strandat 3104.244 kb on + strandat 3104.245 kb on - strandat 3104.245 kb on - strandat 3104.245 kb on - strandat 3104.245 kb on - strandat 3104.288 kb on + strandat 3104.290 kb on + strandat 3104.290 kb on + strandat 3104.290 kb on + strandat 3104.290 kb on + strandat 3104.291 kb on - strandat 3104.291 kb on - strandat 3104.340 kb on + strandat 3104.353 kb on - strandat 3104.477 kb on + strand, within ABZR87_RS14700at 3104.478 kb on - strand, within ABZR87_RS14700at 3104.478 kb on - strand, within ABZR87_RS14700at 3104.520 kb on + strand, within ABZR87_RS14700at 3104.520 kb on + strand, within ABZR87_RS14700at 3104.520 kb on + strand, within ABZR87_RS14700at 3104.893 kb on + strandat 3104.893 kb on + strandat 3104.893 kb on + strandat 3104.894 kb on - strandat 3104.894 kb on - strandat 3104.894 kb on - strandat 3104.894 kb on - strandat 3104.980 kb on + strandat 3104.981 kb on - strandat 3104.981 kb on - strandat 3105.253 kb on + strand, within ABZR87_RS14705at 3105.398 kb on - strand, within ABZR87_RS14705at 3105.398 kb on - strand, within ABZR87_RS14705at 3105.398 kb on - strand, within ABZR87_RS14705at 3105.457 kb on + strand, within ABZR87_RS14705at 3105.458 kb on - strand, within ABZR87_RS14705at 3105.458 kb on - strand, within ABZR87_RS14705at 3105.458 kb on - strand, within ABZR87_RS14705

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_1
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3,103,415 + -0.9
3,103,415 + -0.2
3,103,415 + -0.1
3,103,415 + -0.1
3,103,416 - +0.7
3,103,416 - -0.9
3,103,416 - +0.1
3,103,416 - -1.2
3,103,470 + ABZR87_RS14695 0.12 -1.3
3,103,476 + ABZR87_RS14695 0.13 +0.1
3,103,476 + ABZR87_RS14695 0.13 -0.5
3,103,476 + ABZR87_RS14695 0.13 +0.7
3,103,706 + ABZR87_RS14695 0.37 +0.7
3,103,706 + ABZR87_RS14695 0.37 -0.6
3,103,706 + ABZR87_RS14695 0.37 -1.2
3,103,706 + ABZR87_RS14695 0.37 +0.0
3,103,706 + ABZR87_RS14695 0.37 -0.4
3,103,706 + ABZR87_RS14695 0.37 -1.5
3,103,706 + ABZR87_RS14695 0.37 +0.2
3,103,706 + ABZR87_RS14695 0.37 -0.5
3,103,706 + ABZR87_RS14695 0.37 +0.4
3,103,706 + ABZR87_RS14695 0.37 -0.8
3,103,707 - ABZR87_RS14695 0.38 +3.4
3,103,707 - ABZR87_RS14695 0.38 -0.7
3,103,707 - ABZR87_RS14695 0.38 -0.2
3,103,707 - ABZR87_RS14695 0.38 -2.4
3,103,707 - ABZR87_RS14695 0.38 -0.5
3,103,707 - ABZR87_RS14695 0.38 +0.3
3,103,707 - ABZR87_RS14695 0.38 -0.4
3,103,707 - ABZR87_RS14695 0.38 +0.9
3,103,707 - ABZR87_RS14695 0.38 +0.1
3,103,707 - ABZR87_RS14695 0.38 -1.3
3,103,707 - ABZR87_RS14695 0.38 -0.7
3,103,707 - ABZR87_RS14695 0.38 -0.6
3,103,707 - ABZR87_RS14695 0.38 +1.3
3,103,707 - ABZR87_RS14695 0.38 +1.1
3,103,707 - ABZR87_RS14695 0.38 +0.1
3,103,707 - ABZR87_RS14695 0.38 -0.2
3,103,725 + ABZR87_RS14695 0.39 -0.5
3,104,242 + -1.5
3,104,242 + +0.5
3,104,243 - +1.2
3,104,244 + -0.7
3,104,244 + -0.2
3,104,244 + -0.3
3,104,244 + -0.3
3,104,244 + -0.7
3,104,244 + -1.8
3,104,244 + -0.8
3,104,244 + -0.3
3,104,244 + -0.5
3,104,244 + -0.0
3,104,245 - -0.3
3,104,245 - +0.1
3,104,245 - -1.2
3,104,245 - -0.9
3,104,288 + +1.6
3,104,290 + -0.9
3,104,290 + +0.5
3,104,290 + -1.3
3,104,290 + -1.2
3,104,291 - +0.1
3,104,291 - +0.5
3,104,340 + -0.9
3,104,353 - -0.3
3,104,477 + ABZR87_RS14700 0.20 -1.5
3,104,478 - ABZR87_RS14700 0.20 -1.3
3,104,478 - ABZR87_RS14700 0.20 -0.3
3,104,520 + ABZR87_RS14700 0.30 -0.4
3,104,520 + ABZR87_RS14700 0.30 -0.2
3,104,520 + ABZR87_RS14700 0.30 -1.1
3,104,893 + -0.1
3,104,893 + +0.4
3,104,893 + -1.6
3,104,894 - +1.2
3,104,894 - -0.8
3,104,894 - +0.2
3,104,894 - +0.6
3,104,980 + +0.8
3,104,981 - -0.7
3,104,981 - -0.0
3,105,253 + ABZR87_RS14705 0.27 -0.7
3,105,398 - ABZR87_RS14705 0.39 -1.5
3,105,398 - ABZR87_RS14705 0.39 -0.3
3,105,398 - ABZR87_RS14705 0.39 -0.8
3,105,457 + ABZR87_RS14705 0.44 -0.9
3,105,458 - ABZR87_RS14705 0.44 +1.4
3,105,458 - ABZR87_RS14705 0.44 -0.5
3,105,458 - ABZR87_RS14705 0.44 +0.8

Or see this region's nucleotide sequence