Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09545 and ABZR87_RS09550 are separated by 65 nucleotides ABZR87_RS09550 and ABZR87_RS09555 are separated by 168 nucleotides
ABZR87_RS09545: ABZR87_RS09545 - electron transfer flavoprotein subunit beta/FixA family protein, at 2,026,588 to 2,027,337
_RS09545
ABZR87_RS09550: ABZR87_RS09550 - FAD-binding protein, at 2,027,403 to 2,028,338
_RS09550
ABZR87_RS09555: ABZR87_RS09555 - acyl-CoA dehydrogenase, at 2,028,507 to 2,030,291
_RS09555
Position (kb)
2027
2028
2029 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2026.426 kb on + strand at 2026.436 kb on + strand at 2026.436 kb on + strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.536 kb on + strand at 2026.536 kb on + strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.566 kb on + strand at 2027.335 kb on + strand at 2027.350 kb on + strand at 2027.350 kb on + strand at 2028.363 kb on + strand at 2028.423 kb on + strand at 2028.423 kb on + strand at 2028.423 kb on + strand at 2028.426 kb on - strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.513 kb on + strand at 2028.514 kb on - strand at 2028.514 kb on - strand at 2028.514 kb on - strand at 2028.798 kb on + strand, within ABZR87_RS09555
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 2,026,426 + -1.1 2,026,436 + +0.0 2,026,436 + -0.7 2,026,437 - -0.3 2,026,437 - +0.4 2,026,437 - -0.3 2,026,437 - +0.7 2,026,437 - -0.4 2,026,437 - +0.7 2,026,437 - +0.3 2,026,437 - -0.5 2,026,437 - -0.3 2,026,437 - +1.0 2,026,536 + -1.9 2,026,536 + -0.8 2,026,537 - -0.4 2,026,537 - -0.1 2,026,537 - -0.3 2,026,537 - -1.1 2,026,537 - -0.3 2,026,537 - +1.2 2,026,538 + -0.5 2,026,538 + -0.2 2,026,538 + +0.5 2,026,538 + -0.5 2,026,538 + +0.1 2,026,566 + +1.8 2,027,335 + +0.6 2,027,350 + -0.8 2,027,350 + +0.8 2,028,363 + +0.1 2,028,423 + -0.9 2,028,423 + +0.7 2,028,423 + -0.0 2,028,426 - +0.3 2,028,513 + -1.8 2,028,513 + -0.3 2,028,513 + -0.4 2,028,513 + +0.7 2,028,513 + -0.9 2,028,513 + +0.8 2,028,513 + +1.1 2,028,513 + -0.6 2,028,513 + -0.9 2,028,513 + -0.1 2,028,514 - +1.0 2,028,514 - +0.0 2,028,514 - +0.3 2,028,798 + ABZR87_RS09555 0.16 +1.2
Or see this region's nucleotide sequence