Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS09540 and ABZR87_RS09545 are separated by 189 nucleotides ABZR87_RS09545 and ABZR87_RS09550 are separated by 65 nucleotides
ABZR87_RS09540: ABZR87_RS09540 - MetQ/NlpA family ABC transporter substrate-binding protein, at 2,025,598 to 2,026,398
_RS09540
ABZR87_RS09545: ABZR87_RS09545 - electron transfer flavoprotein subunit beta/FixA family protein, at 2,026,588 to 2,027,337
_RS09545
ABZR87_RS09550: ABZR87_RS09550 - FAD-binding protein, at 2,027,403 to 2,028,338
_RS09550
Position (kb)
2026
2027
2028 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.793 kb on + strand, within ABZR87_RS09540 at 2025.794 kb on - strand, within ABZR87_RS09540 at 2025.794 kb on - strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.844 kb on + strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.845 kb on - strand, within ABZR87_RS09540 at 2025.859 kb on + strand, within ABZR87_RS09540 at 2025.937 kb on + strand, within ABZR87_RS09540 at 2025.937 kb on + strand, within ABZR87_RS09540 at 2025.937 kb on + strand, within ABZR87_RS09540 at 2025.938 kb on - strand, within ABZR87_RS09540 at 2025.938 kb on - strand, within ABZR87_RS09540 at 2025.938 kb on - strand, within ABZR87_RS09540 at 2026.196 kb on - strand, within ABZR87_RS09540 at 2026.196 kb on - strand, within ABZR87_RS09540 at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.330 kb on + strand at 2026.331 kb on - strand at 2026.331 kb on - strand at 2026.331 kb on - strand at 2026.331 kb on - strand at 2026.369 kb on + strand at 2026.369 kb on + strand at 2026.369 kb on + strand at 2026.369 kb on + strand at 2026.370 kb on - strand at 2026.370 kb on - strand at 2026.396 kb on + strand at 2026.426 kb on + strand at 2026.436 kb on + strand at 2026.436 kb on + strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.437 kb on - strand at 2026.536 kb on + strand at 2026.536 kb on + strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.537 kb on - strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.538 kb on + strand at 2026.566 kb on + strand at 2027.335 kb on + strand at 2027.350 kb on + strand at 2027.350 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 2,025,793 + ABZR87_RS09540 0.24 -0.3 2,025,793 + ABZR87_RS09540 0.24 -1.0 2,025,793 + ABZR87_RS09540 0.24 -1.2 2,025,794 - ABZR87_RS09540 0.24 -0.9 2,025,794 - ABZR87_RS09540 0.24 +1.3 2,025,844 + ABZR87_RS09540 0.31 +0.3 2,025,844 + ABZR87_RS09540 0.31 -2.7 2,025,844 + ABZR87_RS09540 0.31 +0.0 2,025,844 + ABZR87_RS09540 0.31 +0.0 2,025,845 - ABZR87_RS09540 0.31 -1.1 2,025,845 - ABZR87_RS09540 0.31 +0.2 2,025,845 - ABZR87_RS09540 0.31 +0.2 2,025,845 - ABZR87_RS09540 0.31 +1.2 2,025,859 + ABZR87_RS09540 0.33 +0.4 2,025,937 + ABZR87_RS09540 0.42 -0.1 2,025,937 + ABZR87_RS09540 0.42 +0.7 2,025,937 + ABZR87_RS09540 0.42 +0.1 2,025,938 - ABZR87_RS09540 0.42 -0.3 2,025,938 - ABZR87_RS09540 0.42 +0.5 2,025,938 - ABZR87_RS09540 0.42 -0.2 2,026,196 - ABZR87_RS09540 0.75 +0.5 2,026,196 - ABZR87_RS09540 0.75 +0.2 2,026,330 + +0.9 2,026,330 + -0.6 2,026,330 + -0.1 2,026,330 + +0.4 2,026,330 + -1.0 2,026,330 + -2.0 2,026,330 + +1.8 2,026,330 + +0.1 2,026,331 - -0.1 2,026,331 - -2.6 2,026,331 - +0.4 2,026,331 - -0.5 2,026,369 + -1.6 2,026,369 + -0.2 2,026,369 + -0.2 2,026,369 + +0.3 2,026,370 - -0.3 2,026,370 - +0.2 2,026,396 + -0.8 2,026,426 + -1.1 2,026,436 + +0.0 2,026,436 + -0.7 2,026,437 - -0.3 2,026,437 - +0.4 2,026,437 - -0.3 2,026,437 - +0.7 2,026,437 - -0.4 2,026,437 - +0.7 2,026,437 - +0.3 2,026,437 - -0.5 2,026,437 - -0.3 2,026,437 - +1.0 2,026,536 + -1.9 2,026,536 + -0.8 2,026,537 - -0.4 2,026,537 - -0.1 2,026,537 - -0.3 2,026,537 - -1.1 2,026,537 - -0.3 2,026,537 - +1.2 2,026,538 + -0.5 2,026,538 + -0.2 2,026,538 + +0.5 2,026,538 + -0.5 2,026,538 + +0.1 2,026,566 + +1.8 2,027,335 + +0.6 2,027,350 + -0.8 2,027,350 + +0.8
Or see this region's nucleotide sequence