Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS09545

Experiment: Ra3_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS09540 and ABZR87_RS09545 are separated by 189 nucleotidesABZR87_RS09545 and ABZR87_RS09550 are separated by 65 nucleotides ABZR87_RS09540: ABZR87_RS09540 - MetQ/NlpA family ABC transporter substrate-binding protein, at 2,025,598 to 2,026,398 _RS09540 ABZR87_RS09545: ABZR87_RS09545 - electron transfer flavoprotein subunit beta/FixA family protein, at 2,026,588 to 2,027,337 _RS09545 ABZR87_RS09550: ABZR87_RS09550 - FAD-binding protein, at 2,027,403 to 2,028,338 _RS09550 Position (kb) 2026 2027 2028Strain fitness (log2 ratio) -2 -1 0 1 2at 2025.793 kb on + strand, within ABZR87_RS09540at 2025.793 kb on + strand, within ABZR87_RS09540at 2025.793 kb on + strand, within ABZR87_RS09540at 2025.794 kb on - strand, within ABZR87_RS09540at 2025.794 kb on - strand, within ABZR87_RS09540at 2025.844 kb on + strand, within ABZR87_RS09540at 2025.844 kb on + strand, within ABZR87_RS09540at 2025.844 kb on + strand, within ABZR87_RS09540at 2025.844 kb on + strand, within ABZR87_RS09540at 2025.845 kb on - strand, within ABZR87_RS09540at 2025.845 kb on - strand, within ABZR87_RS09540at 2025.845 kb on - strand, within ABZR87_RS09540at 2025.845 kb on - strand, within ABZR87_RS09540at 2025.859 kb on + strand, within ABZR87_RS09540at 2025.937 kb on + strand, within ABZR87_RS09540at 2025.937 kb on + strand, within ABZR87_RS09540at 2025.937 kb on + strand, within ABZR87_RS09540at 2025.938 kb on - strand, within ABZR87_RS09540at 2025.938 kb on - strand, within ABZR87_RS09540at 2025.938 kb on - strand, within ABZR87_RS09540at 2026.196 kb on - strand, within ABZR87_RS09540at 2026.196 kb on - strand, within ABZR87_RS09540at 2026.330 kb on + strandat 2026.330 kb on + strandat 2026.330 kb on + strandat 2026.330 kb on + strandat 2026.330 kb on + strandat 2026.330 kb on + strandat 2026.330 kb on + strandat 2026.330 kb on + strandat 2026.331 kb on - strandat 2026.331 kb on - strandat 2026.331 kb on - strandat 2026.331 kb on - strandat 2026.369 kb on + strandat 2026.369 kb on + strandat 2026.369 kb on + strandat 2026.369 kb on + strandat 2026.370 kb on - strandat 2026.370 kb on - strandat 2026.396 kb on + strandat 2026.426 kb on + strandat 2026.436 kb on + strandat 2026.436 kb on + strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.437 kb on - strandat 2026.536 kb on + strandat 2026.536 kb on + strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.537 kb on - strandat 2026.538 kb on + strandat 2026.538 kb on + strandat 2026.538 kb on + strandat 2026.538 kb on + strandat 2026.538 kb on + strandat 2026.566 kb on + strandat 2027.335 kb on + strandat 2027.350 kb on + strandat 2027.350 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_1
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2,025,793 + ABZR87_RS09540 0.24 -0.3
2,025,793 + ABZR87_RS09540 0.24 -1.0
2,025,793 + ABZR87_RS09540 0.24 -1.2
2,025,794 - ABZR87_RS09540 0.24 -0.9
2,025,794 - ABZR87_RS09540 0.24 +1.3
2,025,844 + ABZR87_RS09540 0.31 +0.3
2,025,844 + ABZR87_RS09540 0.31 -2.7
2,025,844 + ABZR87_RS09540 0.31 +0.0
2,025,844 + ABZR87_RS09540 0.31 +0.0
2,025,845 - ABZR87_RS09540 0.31 -1.1
2,025,845 - ABZR87_RS09540 0.31 +0.2
2,025,845 - ABZR87_RS09540 0.31 +0.2
2,025,845 - ABZR87_RS09540 0.31 +1.2
2,025,859 + ABZR87_RS09540 0.33 +0.4
2,025,937 + ABZR87_RS09540 0.42 -0.1
2,025,937 + ABZR87_RS09540 0.42 +0.7
2,025,937 + ABZR87_RS09540 0.42 +0.1
2,025,938 - ABZR87_RS09540 0.42 -0.3
2,025,938 - ABZR87_RS09540 0.42 +0.5
2,025,938 - ABZR87_RS09540 0.42 -0.2
2,026,196 - ABZR87_RS09540 0.75 +0.5
2,026,196 - ABZR87_RS09540 0.75 +0.2
2,026,330 + +0.9
2,026,330 + -0.6
2,026,330 + -0.1
2,026,330 + +0.4
2,026,330 + -1.0
2,026,330 + -2.0
2,026,330 + +1.8
2,026,330 + +0.1
2,026,331 - -0.1
2,026,331 - -2.6
2,026,331 - +0.4
2,026,331 - -0.5
2,026,369 + -1.6
2,026,369 + -0.2
2,026,369 + -0.2
2,026,369 + +0.3
2,026,370 - -0.3
2,026,370 - +0.2
2,026,396 + -0.8
2,026,426 + -1.1
2,026,436 + +0.0
2,026,436 + -0.7
2,026,437 - -0.3
2,026,437 - +0.4
2,026,437 - -0.3
2,026,437 - +0.7
2,026,437 - -0.4
2,026,437 - +0.7
2,026,437 - +0.3
2,026,437 - -0.5
2,026,437 - -0.3
2,026,437 - +1.0
2,026,536 + -1.9
2,026,536 + -0.8
2,026,537 - -0.4
2,026,537 - -0.1
2,026,537 - -0.3
2,026,537 - -1.1
2,026,537 - -0.3
2,026,537 - +1.2
2,026,538 + -0.5
2,026,538 + -0.2
2,026,538 + +0.5
2,026,538 + -0.5
2,026,538 + +0.1
2,026,566 + +1.8
2,027,335 + +0.6
2,027,350 + -0.8
2,027,350 + +0.8

Or see this region's nucleotide sequence