Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08200

Experiment: Ra3_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08190 and ABZR87_RS08195 are separated by 73 nucleotidesABZR87_RS08195 and ABZR87_RS08200 are separated by 343 nucleotidesABZR87_RS08200 and ABZR87_RS08205 are separated by 25 nucleotidesABZR87_RS08205 and ABZR87_RS08210 are separated by 230 nucleotides ABZR87_RS08190: ABZR87_RS08190 - MarR family transcriptional regulator, at 1,742,703 to 1,743,218 _RS08190 ABZR87_RS08195: ABZR87_RS08195 - hypothetical protein, at 1,743,292 to 1,743,633 _RS08195 ABZR87_RS08200: ABZR87_RS08200 - HD-GYP domain-containing protein, at 1,743,977 to 1,745,191 _RS08200 ABZR87_RS08205: ABZR87_RS08205 - hypothetical protein, at 1,745,217 to 1,745,375 _RS08205 ABZR87_RS08210: ABZR87_RS08210 - DUF6685 family protein, at 1,745,606 to 1,746,592 _RS08210 Position (kb) 1743 1744 1745 1746Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1743.333 kb on + strand, within ABZR87_RS08195at 1743.359 kb on + strand, within ABZR87_RS08195at 1743.359 kb on + strand, within ABZR87_RS08195at 1743.359 kb on + strand, within ABZR87_RS08195at 1743.360 kb on - strand, within ABZR87_RS08195at 1743.447 kb on - strand, within ABZR87_RS08195at 1743.447 kb on - strand, within ABZR87_RS08195at 1743.657 kb on + strandat 1743.657 kb on + strandat 1743.657 kb on + strandat 1743.657 kb on + strandat 1743.657 kb on + strandat 1743.657 kb on + strandat 1743.657 kb on + strandat 1743.657 kb on + strandat 1743.658 kb on - strandat 1743.658 kb on - strandat 1743.658 kb on - strandat 1743.658 kb on - strandat 1743.658 kb on - strandat 1743.658 kb on - strandat 1743.658 kb on - strandat 1743.663 kb on - strandat 1743.663 kb on - strandat 1743.879 kb on + strandat 1743.879 kb on + strandat 1743.879 kb on + strandat 1743.879 kb on + strandat 1743.879 kb on + strandat 1743.879 kb on + strandat 1743.880 kb on - strandat 1743.880 kb on - strandat 1743.933 kb on + strandat 1743.933 kb on + strandat 1743.967 kb on + strandat 1743.967 kb on + strandat 1743.967 kb on + strandat 1743.967 kb on + strandat 1743.976 kb on + strandat 1743.976 kb on + strandat 1743.976 kb on + strandat 1743.976 kb on + strandat 1744.118 kb on - strand, within ABZR87_RS08200at 1744.415 kb on + strand, within ABZR87_RS08200at 1744.415 kb on + strand, within ABZR87_RS08200at 1744.415 kb on + strand, within ABZR87_RS08200at 1744.416 kb on - strand, within ABZR87_RS08200at 1744.416 kb on - strand, within ABZR87_RS08200at 1744.416 kb on - strand, within ABZR87_RS08200at 1744.457 kb on + strand, within ABZR87_RS08200at 1744.457 kb on + strand, within ABZR87_RS08200at 1744.457 kb on + strand, within ABZR87_RS08200at 1744.457 kb on + strand, within ABZR87_RS08200at 1744.457 kb on + strand, within ABZR87_RS08200at 1744.458 kb on - strand, within ABZR87_RS08200at 1744.458 kb on - strand, within ABZR87_RS08200at 1744.458 kb on - strand, within ABZR87_RS08200at 1744.463 kb on + strand, within ABZR87_RS08200at 1744.463 kb on + strand, within ABZR87_RS08200at 1744.463 kb on + strand, within ABZR87_RS08200at 1744.463 kb on + strand, within ABZR87_RS08200at 1744.463 kb on + strand, within ABZR87_RS08200at 1744.463 kb on + strand, within ABZR87_RS08200at 1744.463 kb on + strand, within ABZR87_RS08200at 1744.820 kb on + strand, within ABZR87_RS08200at 1744.820 kb on + strand, within ABZR87_RS08200at 1744.821 kb on - strand, within ABZR87_RS08200at 1744.821 kb on - strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.883 kb on + strand, within ABZR87_RS08200at 1744.884 kb on - strand, within ABZR87_RS08200at 1744.884 kb on - strand, within ABZR87_RS08200at 1744.884 kb on - strand, within ABZR87_RS08200at 1744.884 kb on - strand, within ABZR87_RS08200at 1744.936 kb on + strand, within ABZR87_RS08200at 1744.936 kb on + strand, within ABZR87_RS08200at 1744.937 kb on - strand, within ABZR87_RS08200at 1744.937 kb on - strand, within ABZR87_RS08200at 1744.955 kb on + strand, within ABZR87_RS08200at 1744.955 kb on + strand, within ABZR87_RS08200at 1744.955 kb on + strand, within ABZR87_RS08200at 1744.955 kb on + strand, within ABZR87_RS08200at 1744.956 kb on - strand, within ABZR87_RS08200at 1744.956 kb on - strand, within ABZR87_RS08200at 1745.054 kb on + strand, within ABZR87_RS08200at 1745.054 kb on + strand, within ABZR87_RS08200at 1745.343 kb on - strand, within ABZR87_RS08205at 1745.436 kb on + strandat 1745.436 kb on + strandat 1745.437 kb on - strandat 1745.496 kb on - strandat 1745.505 kb on + strandat 1745.506 kb on - strandat 1745.506 kb on - strandat 1745.526 kb on + strandat 1745.526 kb on + strandat 1745.527 kb on - strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.622 kb on + strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.623 kb on - strandat 1745.731 kb on + strand, within ABZR87_RS08210at 1745.731 kb on + strand, within ABZR87_RS08210at 1745.731 kb on + strand, within ABZR87_RS08210at 1745.955 kb on + strand, within ABZR87_RS08210at 1746.035 kb on + strand, within ABZR87_RS08210at 1746.065 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.092 kb on + strand, within ABZR87_RS08210at 1746.093 kb on - strand, within ABZR87_RS08210at 1746.093 kb on - strand, within ABZR87_RS08210at 1746.093 kb on - strand, within ABZR87_RS08210at 1746.145 kb on + strand, within ABZR87_RS08210

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_1
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1,743,333 + ABZR87_RS08195 0.12 +3.4
1,743,359 + ABZR87_RS08195 0.20 -0.2
1,743,359 + ABZR87_RS08195 0.20 +0.8
1,743,359 + ABZR87_RS08195 0.20 +0.4
1,743,360 - ABZR87_RS08195 0.20 -0.2
1,743,447 - ABZR87_RS08195 0.45 -0.5
1,743,447 - ABZR87_RS08195 0.45 +0.2
1,743,657 + -0.5
1,743,657 + -0.2
1,743,657 + -0.7
1,743,657 + +0.5
1,743,657 + +0.0
1,743,657 + +1.6
1,743,657 + -0.6
1,743,657 + +0.6
1,743,658 - +0.8
1,743,658 - +1.1
1,743,658 - +1.4
1,743,658 - -0.0
1,743,658 - -1.4
1,743,658 - +0.6
1,743,658 - +2.4
1,743,663 - +0.9
1,743,663 - +0.9
1,743,879 + -1.3
1,743,879 + -1.1
1,743,879 + -1.9
1,743,879 + +0.0
1,743,879 + -0.5
1,743,879 + -0.3
1,743,880 - +0.5
1,743,880 - +1.4
1,743,933 + -0.8
1,743,933 + -0.1
1,743,967 + -1.0
1,743,967 + -1.5
1,743,967 + -0.6
1,743,967 + +0.4
1,743,976 + -1.3
1,743,976 + -0.4
1,743,976 + -1.8
1,743,976 + -2.7
1,744,118 - ABZR87_RS08200 0.12 -0.8
1,744,415 + ABZR87_RS08200 0.36 -2.0
1,744,415 + ABZR87_RS08200 0.36 -1.6
1,744,415 + ABZR87_RS08200 0.36 -1.4
1,744,416 - ABZR87_RS08200 0.36 -0.9
1,744,416 - ABZR87_RS08200 0.36 -0.8
1,744,416 - ABZR87_RS08200 0.36 -1.8
1,744,457 + ABZR87_RS08200 0.40 -1.2
1,744,457 + ABZR87_RS08200 0.40 -1.3
1,744,457 + ABZR87_RS08200 0.40 -0.1
1,744,457 + ABZR87_RS08200 0.40 -2.4
1,744,457 + ABZR87_RS08200 0.40 +0.0
1,744,458 - ABZR87_RS08200 0.40 -1.1
1,744,458 - ABZR87_RS08200 0.40 -0.0
1,744,458 - ABZR87_RS08200 0.40 +0.7
1,744,463 + ABZR87_RS08200 0.40 -3.0
1,744,463 + ABZR87_RS08200 0.40 -3.2
1,744,463 + ABZR87_RS08200 0.40 -0.8
1,744,463 + ABZR87_RS08200 0.40 -2.9
1,744,463 + ABZR87_RS08200 0.40 -1.7
1,744,463 + ABZR87_RS08200 0.40 -2.9
1,744,463 + ABZR87_RS08200 0.40 -1.8
1,744,820 + ABZR87_RS08200 0.69 -0.6
1,744,820 + ABZR87_RS08200 0.69 -0.5
1,744,821 - ABZR87_RS08200 0.69 -0.9
1,744,821 - ABZR87_RS08200 0.69 -3.2
1,744,883 + ABZR87_RS08200 0.75 -2.3
1,744,883 + ABZR87_RS08200 0.75 -1.6
1,744,883 + ABZR87_RS08200 0.75 +0.9
1,744,883 + ABZR87_RS08200 0.75 +1.0
1,744,883 + ABZR87_RS08200 0.75 -2.4
1,744,883 + ABZR87_RS08200 0.75 -0.7
1,744,883 + ABZR87_RS08200 0.75 -2.3
1,744,883 + ABZR87_RS08200 0.75 -1.0
1,744,884 - ABZR87_RS08200 0.75 -1.7
1,744,884 - ABZR87_RS08200 0.75 -0.4
1,744,884 - ABZR87_RS08200 0.75 -1.4
1,744,884 - ABZR87_RS08200 0.75 -3.3
1,744,936 + ABZR87_RS08200 0.79 -2.9
1,744,936 + ABZR87_RS08200 0.79 -1.5
1,744,937 - ABZR87_RS08200 0.79 -2.2
1,744,937 - ABZR87_RS08200 0.79 -2.0
1,744,955 + ABZR87_RS08200 0.80 -2.4
1,744,955 + ABZR87_RS08200 0.80 -2.1
1,744,955 + ABZR87_RS08200 0.80 -0.9
1,744,955 + ABZR87_RS08200 0.80 -1.5
1,744,956 - ABZR87_RS08200 0.81 -0.4
1,744,956 - ABZR87_RS08200 0.81 -0.0
1,745,054 + ABZR87_RS08200 0.89 -0.2
1,745,054 + ABZR87_RS08200 0.89 -0.9
1,745,343 - ABZR87_RS08205 0.79 +0.7
1,745,436 + -1.6
1,745,436 + -0.2
1,745,437 - +0.3
1,745,496 - +0.1
1,745,505 + +1.8
1,745,506 - -0.6
1,745,506 - -0.4
1,745,526 + -0.2
1,745,526 + -0.8
1,745,527 - -0.3
1,745,622 + -0.7
1,745,622 + +0.6
1,745,622 + +3.4
1,745,622 + +1.8
1,745,622 + -0.2
1,745,622 + +0.1
1,745,623 - -0.7
1,745,623 - +0.5
1,745,623 - -0.2
1,745,623 - -0.5
1,745,623 - -1.5
1,745,623 - +0.1
1,745,623 - -0.2
1,745,731 + ABZR87_RS08210 0.13 -0.8
1,745,731 + ABZR87_RS08210 0.13 +0.0
1,745,731 + ABZR87_RS08210 0.13 +2.4
1,745,955 + ABZR87_RS08210 0.35 -1.2
1,746,035 + ABZR87_RS08210 0.43 -1.0
1,746,065 + ABZR87_RS08210 0.47 +0.6
1,746,092 + ABZR87_RS08210 0.49 -0.5
1,746,092 + ABZR87_RS08210 0.49 +0.1
1,746,092 + ABZR87_RS08210 0.49 -0.5
1,746,092 + ABZR87_RS08210 0.49 -0.4
1,746,092 + ABZR87_RS08210 0.49 -0.9
1,746,092 + ABZR87_RS08210 0.49 +0.2
1,746,092 + ABZR87_RS08210 0.49 -1.1
1,746,093 - ABZR87_RS08210 0.49 -0.5
1,746,093 - ABZR87_RS08210 0.49 -0.6
1,746,093 - ABZR87_RS08210 0.49 +0.5
1,746,145 + ABZR87_RS08210 0.55 -0.3

Or see this region's nucleotide sequence