Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06545

Experiment: Ra3_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06540 and ABZR87_RS06545 are separated by 179 nucleotidesABZR87_RS06545 and ABZR87_RS06550 overlap by 4 nucleotides ABZR87_RS06540: ABZR87_RS06540 - phosphocholine-specific phospholipase C, at 1,391,848 to 1,393,950 _RS06540 ABZR87_RS06545: ABZR87_RS06545 - hypothetical protein, at 1,394,130 to 1,394,432 _RS06545 ABZR87_RS06550: ABZR87_RS06550 - DMT family transporter, at 1,394,429 to 1,395,499 _RS06550 Position (kb) 1394 1395Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1393.270 kb on + strand, within ABZR87_RS06540at 1393.270 kb on + strand, within ABZR87_RS06540at 1393.270 kb on + strand, within ABZR87_RS06540at 1393.270 kb on + strand, within ABZR87_RS06540at 1393.270 kb on + strand, within ABZR87_RS06540at 1393.271 kb on - strand, within ABZR87_RS06540at 1393.271 kb on - strand, within ABZR87_RS06540at 1393.271 kb on - strand, within ABZR87_RS06540at 1393.271 kb on - strand, within ABZR87_RS06540at 1393.271 kb on - strand, within ABZR87_RS06540at 1393.271 kb on - strand, within ABZR87_RS06540at 1393.271 kb on - strand, within ABZR87_RS06540at 1393.271 kb on - strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.303 kb on + strand, within ABZR87_RS06540at 1393.304 kb on - strand, within ABZR87_RS06540at 1393.304 kb on - strand, within ABZR87_RS06540at 1393.304 kb on - strand, within ABZR87_RS06540at 1393.304 kb on - strand, within ABZR87_RS06540at 1393.307 kb on + strand, within ABZR87_RS06540at 1393.307 kb on + strand, within ABZR87_RS06540at 1393.308 kb on - strand, within ABZR87_RS06540at 1393.308 kb on - strand, within ABZR87_RS06540at 1393.309 kb on - strand, within ABZR87_RS06540at 1393.334 kb on + strand, within ABZR87_RS06540at 1393.378 kb on + strand, within ABZR87_RS06540at 1393.378 kb on + strand, within ABZR87_RS06540at 1393.379 kb on - strand, within ABZR87_RS06540at 1393.474 kb on + strand, within ABZR87_RS06540at 1393.475 kb on - strand, within ABZR87_RS06540at 1393.507 kb on + strand, within ABZR87_RS06540at 1393.507 kb on + strand, within ABZR87_RS06540at 1393.507 kb on + strand, within ABZR87_RS06540at 1393.508 kb on - strand, within ABZR87_RS06540at 1393.508 kb on - strand, within ABZR87_RS06540at 1393.508 kb on - strand, within ABZR87_RS06540at 1393.567 kb on + strand, within ABZR87_RS06540at 1393.568 kb on - strand, within ABZR87_RS06540at 1393.568 kb on - strand, within ABZR87_RS06540at 1393.568 kb on - strand, within ABZR87_RS06540at 1393.678 kb on + strand, within ABZR87_RS06540at 1393.679 kb on - strand, within ABZR87_RS06540at 1393.679 kb on - strand, within ABZR87_RS06540at 1393.679 kb on - strand, within ABZR87_RS06540at 1393.685 kb on + strand, within ABZR87_RS06540at 1393.685 kb on + strand, within ABZR87_RS06540at 1393.686 kb on - strand, within ABZR87_RS06540at 1393.686 kb on - strand, within ABZR87_RS06540at 1393.735 kb on - strand, within ABZR87_RS06540at 1393.759 kb on + strandat 1393.759 kb on + strandat 1393.759 kb on + strandat 1393.760 kb on - strandat 1393.760 kb on - strandat 1393.813 kb on + strandat 1393.814 kb on - strandat 1393.814 kb on - strandat 1393.814 kb on - strandat 1393.814 kb on - strandat 1393.843 kb on + strandat 1393.844 kb on - strandat 1393.844 kb on - strandat 1393.948 kb on + strandat 1393.949 kb on - strandat 1393.949 kb on - strandat 1394.039 kb on + strandat 1394.054 kb on + strandat 1394.054 kb on + strandat 1394.055 kb on - strandat 1394.123 kb on + strandat 1394.124 kb on - strandat 1394.278 kb on + strand, within ABZR87_RS06545at 1394.278 kb on + strand, within ABZR87_RS06545at 1394.278 kb on + strand, within ABZR87_RS06545at 1394.279 kb on - strand, within ABZR87_RS06545at 1394.317 kb on + strand, within ABZR87_RS06545at 1394.317 kb on + strand, within ABZR87_RS06545at 1394.317 kb on + strand, within ABZR87_RS06545at 1394.317 kb on + strand, within ABZR87_RS06545at 1394.318 kb on - strand, within ABZR87_RS06545at 1394.339 kb on - strand, within ABZR87_RS06545at 1394.410 kb on + strandat 1394.410 kb on + strandat 1394.410 kb on + strandat 1394.410 kb on + strandat 1394.411 kb on - strandat 1394.411 kb on - strandat 1394.550 kb on + strand, within ABZR87_RS06550at 1394.550 kb on + strand, within ABZR87_RS06550at 1394.550 kb on + strand, within ABZR87_RS06550at 1394.550 kb on + strand, within ABZR87_RS06550at 1394.551 kb on - strand, within ABZR87_RS06550at 1394.551 kb on - strand, within ABZR87_RS06550at 1394.551 kb on - strand, within ABZR87_RS06550at 1394.551 kb on - strand, within ABZR87_RS06550at 1394.551 kb on - strand, within ABZR87_RS06550at 1394.607 kb on + strand, within ABZR87_RS06550at 1394.607 kb on + strand, within ABZR87_RS06550at 1394.607 kb on + strand, within ABZR87_RS06550at 1394.607 kb on + strand, within ABZR87_RS06550at 1394.608 kb on - strand, within ABZR87_RS06550at 1394.661 kb on + strand, within ABZR87_RS06550at 1394.661 kb on + strand, within ABZR87_RS06550at 1394.661 kb on + strand, within ABZR87_RS06550at 1394.662 kb on - strand, within ABZR87_RS06550at 1394.811 kb on + strand, within ABZR87_RS06550at 1394.811 kb on + strand, within ABZR87_RS06550at 1394.811 kb on + strand, within ABZR87_RS06550at 1394.812 kb on - strand, within ABZR87_RS06550at 1394.812 kb on - strand, within ABZR87_RS06550at 1394.812 kb on - strand, within ABZR87_RS06550at 1394.812 kb on - strand, within ABZR87_RS06550at 1394.985 kb on + strand, within ABZR87_RS06550at 1394.985 kb on + strand, within ABZR87_RS06550at 1394.985 kb on + strand, within ABZR87_RS06550at 1394.985 kb on + strand, within ABZR87_RS06550at 1394.985 kb on + strand, within ABZR87_RS06550at 1394.986 kb on - strand, within ABZR87_RS06550at 1395.054 kb on + strand, within ABZR87_RS06550at 1395.054 kb on + strand, within ABZR87_RS06550at 1395.054 kb on + strand, within ABZR87_RS06550at 1395.090 kb on + strand, within ABZR87_RS06550at 1395.091 kb on - strand, within ABZR87_RS06550at 1395.091 kb on - strand, within ABZR87_RS06550at 1395.129 kb on + strand, within ABZR87_RS06550at 1395.129 kb on + strand, within ABZR87_RS06550at 1395.129 kb on + strand, within ABZR87_RS06550at 1395.130 kb on - strand, within ABZR87_RS06550at 1395.130 kb on - strand, within ABZR87_RS06550at 1395.130 kb on - strand, within ABZR87_RS06550at 1395.130 kb on - strand, within ABZR87_RS06550at 1395.130 kb on - strand, within ABZR87_RS06550at 1395.130 kb on - strand, within ABZR87_RS06550at 1395.130 kb on - strand, within ABZR87_RS06550at 1395.144 kb on + strand, within ABZR87_RS06550at 1395.144 kb on + strand, within ABZR87_RS06550at 1395.144 kb on + strand, within ABZR87_RS06550at 1395.144 kb on + strand, within ABZR87_RS06550at 1395.144 kb on + strand, within ABZR87_RS06550at 1395.145 kb on - strand, within ABZR87_RS06550at 1395.145 kb on - strand, within ABZR87_RS06550at 1395.145 kb on - strand, within ABZR87_RS06550at 1395.192 kb on + strand, within ABZR87_RS06550at 1395.192 kb on + strand, within ABZR87_RS06550at 1395.193 kb on - strand, within ABZR87_RS06550at 1395.193 kb on - strand, within ABZR87_RS06550at 1395.193 kb on - strand, within ABZR87_RS06550at 1395.193 kb on - strand, within ABZR87_RS06550at 1395.234 kb on + strand, within ABZR87_RS06550at 1395.234 kb on + strand, within ABZR87_RS06550at 1395.234 kb on + strand, within ABZR87_RS06550at 1395.235 kb on - strand, within ABZR87_RS06550at 1395.235 kb on - strand, within ABZR87_RS06550at 1395.235 kb on - strand, within ABZR87_RS06550at 1395.399 kb on + strandat 1395.399 kb on + strandat 1395.399 kb on + strandat 1395.400 kb on - strandat 1395.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_1
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1,393,270 + ABZR87_RS06540 0.68 -0.4
1,393,270 + ABZR87_RS06540 0.68 +0.7
1,393,270 + ABZR87_RS06540 0.68 -0.1
1,393,270 + ABZR87_RS06540 0.68 -0.3
1,393,270 + ABZR87_RS06540 0.68 +0.4
1,393,271 - ABZR87_RS06540 0.68 +0.1
1,393,271 - ABZR87_RS06540 0.68 +2.4
1,393,271 - ABZR87_RS06540 0.68 -0.2
1,393,271 - ABZR87_RS06540 0.68 -0.7
1,393,271 - ABZR87_RS06540 0.68 +0.3
1,393,271 - ABZR87_RS06540 0.68 +0.9
1,393,271 - ABZR87_RS06540 0.68 +0.5
1,393,271 - ABZR87_RS06540 0.68 -0.1
1,393,303 + ABZR87_RS06540 0.69 -0.6
1,393,303 + ABZR87_RS06540 0.69 +0.1
1,393,303 + ABZR87_RS06540 0.69 +0.2
1,393,303 + ABZR87_RS06540 0.69 +0.3
1,393,303 + ABZR87_RS06540 0.69 -0.0
1,393,303 + ABZR87_RS06540 0.69 +0.1
1,393,303 + ABZR87_RS06540 0.69 -0.2
1,393,303 + ABZR87_RS06540 0.69 +0.8
1,393,303 + ABZR87_RS06540 0.69 -0.4
1,393,303 + ABZR87_RS06540 0.69 -0.2
1,393,304 - ABZR87_RS06540 0.69 -0.7
1,393,304 - ABZR87_RS06540 0.69 -0.6
1,393,304 - ABZR87_RS06540 0.69 +1.1
1,393,304 - ABZR87_RS06540 0.69 -1.6
1,393,307 + ABZR87_RS06540 0.69 -0.8
1,393,307 + ABZR87_RS06540 0.69 +0.1
1,393,308 - ABZR87_RS06540 0.69 +0.1
1,393,308 - ABZR87_RS06540 0.69 +1.8
1,393,309 - ABZR87_RS06540 0.69 -0.5
1,393,334 + ABZR87_RS06540 0.71 -1.3
1,393,378 + ABZR87_RS06540 0.73 -0.2
1,393,378 + ABZR87_RS06540 0.73 -2.2
1,393,379 - ABZR87_RS06540 0.73 -0.6
1,393,474 + ABZR87_RS06540 0.77 -0.2
1,393,475 - ABZR87_RS06540 0.77 -0.2
1,393,507 + ABZR87_RS06540 0.79 -0.5
1,393,507 + ABZR87_RS06540 0.79 +0.6
1,393,507 + ABZR87_RS06540 0.79 -0.1
1,393,508 - ABZR87_RS06540 0.79 -1.4
1,393,508 - ABZR87_RS06540 0.79 +1.0
1,393,508 - ABZR87_RS06540 0.79 -0.5
1,393,567 + ABZR87_RS06540 0.82 +0.4
1,393,568 - ABZR87_RS06540 0.82 +0.5
1,393,568 - ABZR87_RS06540 0.82 -0.5
1,393,568 - ABZR87_RS06540 0.82 +1.2
1,393,678 + ABZR87_RS06540 0.87 -0.8
1,393,679 - ABZR87_RS06540 0.87 -2.4
1,393,679 - ABZR87_RS06540 0.87 -1.8
1,393,679 - ABZR87_RS06540 0.87 -0.0
1,393,685 + ABZR87_RS06540 0.87 -0.1
1,393,685 + ABZR87_RS06540 0.87 +2.3
1,393,686 - ABZR87_RS06540 0.87 -0.1
1,393,686 - ABZR87_RS06540 0.87 +0.7
1,393,735 - ABZR87_RS06540 0.90 -1.2
1,393,759 + -1.2
1,393,759 + -0.6
1,393,759 + -0.1
1,393,760 - +1.9
1,393,760 - -0.3
1,393,813 + +0.9
1,393,814 - -0.2
1,393,814 - +0.1
1,393,814 - -1.5
1,393,814 - -1.5
1,393,843 + +1.2
1,393,844 - -0.7
1,393,844 - -0.3
1,393,948 + +0.6
1,393,949 - -1.3
1,393,949 - -0.2
1,394,039 + +2.3
1,394,054 + +2.6
1,394,054 + +1.6
1,394,055 - +2.4
1,394,123 + +2.0
1,394,124 - +2.9
1,394,278 + ABZR87_RS06545 0.49 +2.6
1,394,278 + ABZR87_RS06545 0.49 +2.7
1,394,278 + ABZR87_RS06545 0.49 +3.0
1,394,279 - ABZR87_RS06545 0.49 +2.8
1,394,317 + ABZR87_RS06545 0.62 +3.1
1,394,317 + ABZR87_RS06545 0.62 +2.1
1,394,317 + ABZR87_RS06545 0.62 +2.6
1,394,317 + ABZR87_RS06545 0.62 +2.2
1,394,318 - ABZR87_RS06545 0.62 +3.3
1,394,339 - ABZR87_RS06545 0.69 +1.8
1,394,410 + +3.5
1,394,410 + +3.1
1,394,410 + +2.5
1,394,410 + +2.0
1,394,411 - +3.1
1,394,411 - +1.6
1,394,550 + ABZR87_RS06550 0.11 +2.4
1,394,550 + ABZR87_RS06550 0.11 +2.4
1,394,550 + ABZR87_RS06550 0.11 +1.6
1,394,550 + ABZR87_RS06550 0.11 +2.9
1,394,551 - ABZR87_RS06550 0.11 +2.7
1,394,551 - ABZR87_RS06550 0.11 +2.7
1,394,551 - ABZR87_RS06550 0.11 +2.3
1,394,551 - ABZR87_RS06550 0.11 +2.9
1,394,551 - ABZR87_RS06550 0.11 +1.9
1,394,607 + ABZR87_RS06550 0.17 +2.9
1,394,607 + ABZR87_RS06550 0.17 +2.3
1,394,607 + ABZR87_RS06550 0.17 +2.5
1,394,607 + ABZR87_RS06550 0.17 +1.7
1,394,608 - ABZR87_RS06550 0.17 +2.4
1,394,661 + ABZR87_RS06550 0.22 +2.2
1,394,661 + ABZR87_RS06550 0.22 +3.1
1,394,661 + ABZR87_RS06550 0.22 +1.0
1,394,662 - ABZR87_RS06550 0.22 +2.4
1,394,811 + ABZR87_RS06550 0.36 +1.8
1,394,811 + ABZR87_RS06550 0.36 +2.2
1,394,811 + ABZR87_RS06550 0.36 +2.5
1,394,812 - ABZR87_RS06550 0.36 +2.5
1,394,812 - ABZR87_RS06550 0.36 +2.7
1,394,812 - ABZR87_RS06550 0.36 +2.4
1,394,812 - ABZR87_RS06550 0.36 +2.3
1,394,985 + ABZR87_RS06550 0.52 +2.1
1,394,985 + ABZR87_RS06550 0.52 +3.1
1,394,985 + ABZR87_RS06550 0.52 +2.1
1,394,985 + ABZR87_RS06550 0.52 +3.4
1,394,985 + ABZR87_RS06550 0.52 +1.8
1,394,986 - ABZR87_RS06550 0.52 +3.3
1,395,054 + ABZR87_RS06550 0.58 +2.4
1,395,054 + ABZR87_RS06550 0.58 +2.4
1,395,054 + ABZR87_RS06550 0.58 +1.8
1,395,090 + ABZR87_RS06550 0.62 +2.5
1,395,091 - ABZR87_RS06550 0.62 +3.0
1,395,091 - ABZR87_RS06550 0.62 +3.6
1,395,129 + ABZR87_RS06550 0.65 +2.4
1,395,129 + ABZR87_RS06550 0.65 +1.4
1,395,129 + ABZR87_RS06550 0.65 +2.6
1,395,130 - ABZR87_RS06550 0.65 +2.1
1,395,130 - ABZR87_RS06550 0.65 +1.4
1,395,130 - ABZR87_RS06550 0.65 +2.2
1,395,130 - ABZR87_RS06550 0.65 +1.8
1,395,130 - ABZR87_RS06550 0.65 +2.8
1,395,130 - ABZR87_RS06550 0.65 +2.6
1,395,130 - ABZR87_RS06550 0.65 +2.7
1,395,144 + ABZR87_RS06550 0.67 +2.1
1,395,144 + ABZR87_RS06550 0.67 +2.7
1,395,144 + ABZR87_RS06550 0.67 +2.0
1,395,144 + ABZR87_RS06550 0.67 +2.8
1,395,144 + ABZR87_RS06550 0.67 +2.1
1,395,145 - ABZR87_RS06550 0.67 +3.0
1,395,145 - ABZR87_RS06550 0.67 +1.9
1,395,145 - ABZR87_RS06550 0.67 +2.0
1,395,192 + ABZR87_RS06550 0.71 +1.2
1,395,192 + ABZR87_RS06550 0.71 +1.0
1,395,193 - ABZR87_RS06550 0.71 +2.8
1,395,193 - ABZR87_RS06550 0.71 +2.5
1,395,193 - ABZR87_RS06550 0.71 +2.5
1,395,193 - ABZR87_RS06550 0.71 +2.0
1,395,234 + ABZR87_RS06550 0.75 +2.9
1,395,234 + ABZR87_RS06550 0.75 +2.0
1,395,234 + ABZR87_RS06550 0.75 +2.2
1,395,235 - ABZR87_RS06550 0.75 +2.7
1,395,235 - ABZR87_RS06550 0.75 +2.9
1,395,235 - ABZR87_RS06550 0.75 +2.9
1,395,399 + +2.5
1,395,399 + +1.8
1,395,399 + +2.5
1,395,400 - +2.3
1,395,429 - +2.3

Or see this region's nucleotide sequence