Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04035 and ABZR87_RS04040 are separated by 172 nucleotides ABZR87_RS04040 and ABZR87_RS04045 are separated by 13 nucleotides ABZR87_RS04045 and ABZR87_RS04050 are separated by 115 nucleotides ABZR87_RS04050 and ABZR87_RS04055 are separated by 20 nucleotides
ABZR87_RS04035: ABZR87_RS04035 - phosphate ABC transporter substrate-binding protein PstS, at 846,585 to 847,646
_RS04035
ABZR87_RS04040: ABZR87_RS04040 - DUF3562 domain-containing protein, at 847,819 to 848,022
_RS04040
ABZR87_RS04045: ABZR87_RS04045 - alpha/beta hydrolase, at 848,036 to 848,983
_RS04045
ABZR87_RS04050: ABZR87_RS04050 - CoA-binding protein, at 849,099 to 849,560
_RS04050
ABZR87_RS04055: ABZR87_RS04055 - RsiV family protein, at 849,581 to 850,723
_RS04055
Position (kb) 848
849 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.071 kb on + strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.072 kb on - strand, within ABZR87_RS04035 at 847.086 kb on + strand, within ABZR87_RS04035 at 847.087 kb on - strand, within ABZR87_RS04035 at 847.123 kb on - strand, within ABZR87_RS04035 at 847.123 kb on - strand, within ABZR87_RS04035 at 847.224 kb on + strand, within ABZR87_RS04035 at 847.224 kb on + strand, within ABZR87_RS04035 at 847.224 kb on + strand, within ABZR87_RS04035 at 847.224 kb on + strand, within ABZR87_RS04035 at 847.225 kb on - strand, within ABZR87_RS04035 at 847.225 kb on - strand, within ABZR87_RS04035 at 847.225 kb on - strand, within ABZR87_RS04035 at 847.233 kb on + strand, within ABZR87_RS04035 at 847.233 kb on + strand, within ABZR87_RS04035 at 847.233 kb on + strand, within ABZR87_RS04035 at 847.233 kb on + strand, within ABZR87_RS04035 at 847.234 kb on - strand, within ABZR87_RS04035 at 847.234 kb on - strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.239 kb on + strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.240 kb on - strand, within ABZR87_RS04035 at 847.494 kb on + strand, within ABZR87_RS04035 at 847.495 kb on - strand, within ABZR87_RS04035 at 847.567 kb on - strand at 847.593 kb on - strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.752 kb on + strand at 847.753 kb on - strand at 847.753 kb on - strand at 847.753 kb on - strand at 847.753 kb on - strand at 847.754 kb on + strand at 847.754 kb on + strand at 847.755 kb on - strand at 847.755 kb on - strand at 847.755 kb on - strand at 847.755 kb on - strand at 847.825 kb on - strand at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.906 kb on + strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.907 kb on - strand, within ABZR87_RS04040 at 847.954 kb on + strand, within ABZR87_RS04040 at 847.954 kb on + strand, within ABZR87_RS04040 at 847.955 kb on - strand, within ABZR87_RS04040 at 847.955 kb on - strand, within ABZR87_RS04040 at 848.037 kb on + strand at 848.037 kb on + strand at 848.038 kb on - strand at 848.038 kb on - strand at 848.116 kb on + strand at 848.117 kb on - strand at 848.185 kb on - strand, within ABZR87_RS04045 at 848.185 kb on - strand, within ABZR87_RS04045 at 848.185 kb on - strand, within ABZR87_RS04045 at 848.185 kb on - strand, within ABZR87_RS04045 at 848.193 kb on + strand, within ABZR87_RS04045 at 848.193 kb on + strand, within ABZR87_RS04045 at 848.194 kb on - strand, within ABZR87_RS04045 at 848.257 kb on + strand, within ABZR87_RS04045 at 848.258 kb on - strand, within ABZR87_RS04045 at 848.259 kb on + strand, within ABZR87_RS04045 at 848.259 kb on + strand, within ABZR87_RS04045 at 848.259 kb on + strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.260 kb on - strand, within ABZR87_RS04045 at 848.337 kb on + strand, within ABZR87_RS04045 at 848.337 kb on + strand, within ABZR87_RS04045 at 848.337 kb on + strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.338 kb on - strand, within ABZR87_RS04045 at 848.349 kb on + strand, within ABZR87_RS04045 at 848.349 kb on + strand, within ABZR87_RS04045 at 848.349 kb on + strand, within ABZR87_RS04045 at 848.349 kb on + strand, within ABZR87_RS04045 at 848.350 kb on - strand, within ABZR87_RS04045 at 848.350 kb on - strand, within ABZR87_RS04045 at 848.400 kb on + strand, within ABZR87_RS04045 at 848.401 kb on - strand, within ABZR87_RS04045 at 848.401 kb on - strand, within ABZR87_RS04045 at 848.437 kb on - strand, within ABZR87_RS04045 at 848.574 kb on + strand, within ABZR87_RS04045 at 848.575 kb on - strand, within ABZR87_RS04045 at 848.575 kb on - strand, within ABZR87_RS04045 at 848.665 kb on + strand, within ABZR87_RS04045 at 848.666 kb on - strand, within ABZR87_RS04045 at 848.952 kb on + strand at 848.952 kb on + strand at 848.952 kb on + strand at 848.953 kb on - strand at 848.953 kb on - strand at 848.953 kb on - strand at 848.988 kb on + strand at 848.988 kb on + strand at 848.988 kb on + strand at 848.988 kb on + strand at 848.988 kb on + strand at 848.989 kb on - strand at 848.989 kb on - strand at 848.989 kb on - strand at 848.989 kb on - strand at 849.016 kb on + strand at 849.016 kb on + strand at 849.017 kb on - strand at 849.046 kb on + strand at 849.047 kb on - strand at 849.047 kb on - strand at 849.100 kb on + strand at 849.100 kb on + strand at 849.100 kb on + strand at 849.293 kb on + strand, within ABZR87_RS04050 at 849.358 kb on + strand, within ABZR87_RS04050 at 849.358 kb on + strand, within ABZR87_RS04050 at 849.358 kb on + strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.359 kb on - strand, within ABZR87_RS04050 at 849.436 kb on + strand, within ABZR87_RS04050 at 849.436 kb on + strand, within ABZR87_RS04050 at 849.437 kb on - strand, within ABZR87_RS04050 at 849.451 kb on + strand, within ABZR87_RS04050 at 849.451 kb on + strand, within ABZR87_RS04050 at 849.451 kb on + strand, within ABZR87_RS04050 at 849.451 kb on + strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.452 kb on - strand, within ABZR87_RS04050 at 849.541 kb on + strand at 849.541 kb on + strand at 849.541 kb on + strand at 849.541 kb on + strand at 849.541 kb on + strand at 849.542 kb on - strand at 849.654 kb on + strand at 849.654 kb on + strand at 849.655 kb on - strand at 849.669 kb on + strand at 849.669 kb on + strand at 849.669 kb on + strand at 849.669 kb on + strand at 849.670 kb on - strand at 849.709 kb on + strand, within ABZR87_RS04055 at 849.727 kb on + strand, within ABZR87_RS04055 at 849.805 kb on + strand, within ABZR87_RS04055 at 849.805 kb on + strand, within ABZR87_RS04055 at 849.805 kb on + strand, within ABZR87_RS04055 at 849.805 kb on + strand, within ABZR87_RS04055 at 849.806 kb on - strand, within ABZR87_RS04055 at 849.806 kb on - strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.909 kb on + strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.910 kb on - strand, within ABZR87_RS04055 at 849.933 kb on + strand, within ABZR87_RS04055 at 849.933 kb on + strand, within ABZR87_RS04055 at 849.933 kb on + strand, within ABZR87_RS04055 at 849.933 kb on + strand, within ABZR87_RS04055 at 849.934 kb on - strand, within ABZR87_RS04055
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 847,071 + ABZR87_RS04035 0.46 +0.3 847,071 + ABZR87_RS04035 0.46 -0.2 847,071 + ABZR87_RS04035 0.46 -0.2 847,071 + ABZR87_RS04035 0.46 -1.0 847,071 + ABZR87_RS04035 0.46 -1.2 847,071 + ABZR87_RS04035 0.46 +0.1 847,071 + ABZR87_RS04035 0.46 -0.6 847,072 - ABZR87_RS04035 0.46 +0.7 847,072 - ABZR87_RS04035 0.46 +0.1 847,072 - ABZR87_RS04035 0.46 -0.5 847,072 - ABZR87_RS04035 0.46 -0.8 847,072 - ABZR87_RS04035 0.46 -0.1 847,086 + ABZR87_RS04035 0.47 -0.0 847,087 - ABZR87_RS04035 0.47 -1.3 847,123 - ABZR87_RS04035 0.51 +1.4 847,123 - ABZR87_RS04035 0.51 -1.7 847,224 + ABZR87_RS04035 0.60 -0.4 847,224 + ABZR87_RS04035 0.60 -0.3 847,224 + ABZR87_RS04035 0.60 -0.0 847,224 + ABZR87_RS04035 0.60 +0.9 847,225 - ABZR87_RS04035 0.60 +0.6 847,225 - ABZR87_RS04035 0.60 -0.5 847,225 - ABZR87_RS04035 0.60 +0.9 847,233 + ABZR87_RS04035 0.61 -0.9 847,233 + ABZR87_RS04035 0.61 -0.6 847,233 + ABZR87_RS04035 0.61 +0.1 847,233 + ABZR87_RS04035 0.61 -0.0 847,234 - ABZR87_RS04035 0.61 -1.0 847,234 - ABZR87_RS04035 0.61 +0.0 847,239 + ABZR87_RS04035 0.62 +1.0 847,239 + ABZR87_RS04035 0.62 +0.2 847,239 + ABZR87_RS04035 0.62 +0.8 847,239 + ABZR87_RS04035 0.62 -0.4 847,239 + ABZR87_RS04035 0.62 -0.1 847,239 + ABZR87_RS04035 0.62 +0.2 847,239 + ABZR87_RS04035 0.62 +0.2 847,239 + ABZR87_RS04035 0.62 -0.5 847,240 - ABZR87_RS04035 0.62 +0.5 847,240 - ABZR87_RS04035 0.62 +0.1 847,240 - ABZR87_RS04035 0.62 -0.8 847,240 - ABZR87_RS04035 0.62 -0.6 847,240 - ABZR87_RS04035 0.62 +2.6 847,240 - ABZR87_RS04035 0.62 -2.6 847,240 - ABZR87_RS04035 0.62 +0.4 847,240 - ABZR87_RS04035 0.62 +0.2 847,240 - ABZR87_RS04035 0.62 +1.2 847,240 - ABZR87_RS04035 0.62 -0.3 847,240 - ABZR87_RS04035 0.62 -0.2 847,494 + ABZR87_RS04035 0.86 -0.2 847,495 - ABZR87_RS04035 0.86 -0.5 847,567 - +0.3 847,593 - +0.5 847,752 + -0.4 847,752 + +0.1 847,752 + -1.3 847,752 + +0.6 847,752 + +0.8 847,752 + -0.5 847,752 + -0.5 847,752 + -0.3 847,753 - -0.3 847,753 - +0.1 847,753 - +0.4 847,753 - -0.9 847,754 + +0.1 847,754 + -1.4 847,755 - -0.4 847,755 - +0.2 847,755 - -0.8 847,755 - -0.0 847,825 - -0.2 847,906 + ABZR87_RS04040 0.43 +0.1 847,906 + ABZR87_RS04040 0.43 +0.3 847,906 + ABZR87_RS04040 0.43 +0.9 847,906 + ABZR87_RS04040 0.43 +0.6 847,906 + ABZR87_RS04040 0.43 +0.6 847,906 + ABZR87_RS04040 0.43 -0.6 847,907 - ABZR87_RS04040 0.43 +0.3 847,907 - ABZR87_RS04040 0.43 +0.5 847,907 - ABZR87_RS04040 0.43 -0.5 847,907 - ABZR87_RS04040 0.43 +0.3 847,907 - ABZR87_RS04040 0.43 +0.4 847,954 + ABZR87_RS04040 0.66 +0.3 847,954 + ABZR87_RS04040 0.66 -0.1 847,955 - ABZR87_RS04040 0.67 +0.7 847,955 - ABZR87_RS04040 0.67 -0.2 848,037 + +1.1 848,037 + +0.2 848,038 - -2.3 848,038 - -0.3 848,116 + -0.2 848,117 - +0.3 848,185 - ABZR87_RS04045 0.16 +1.8 848,185 - ABZR87_RS04045 0.16 +0.2 848,185 - ABZR87_RS04045 0.16 +1.5 848,185 - ABZR87_RS04045 0.16 +0.1 848,193 + ABZR87_RS04045 0.17 -0.3 848,193 + ABZR87_RS04045 0.17 +0.4 848,194 - ABZR87_RS04045 0.17 -1.9 848,257 + ABZR87_RS04045 0.23 +0.4 848,258 - ABZR87_RS04045 0.23 +0.1 848,259 + ABZR87_RS04045 0.24 +0.2 848,259 + ABZR87_RS04045 0.24 -0.7 848,259 + ABZR87_RS04045 0.24 +1.6 848,260 - ABZR87_RS04045 0.24 +2.1 848,260 - ABZR87_RS04045 0.24 +0.7 848,260 - ABZR87_RS04045 0.24 +1.2 848,260 - ABZR87_RS04045 0.24 +0.3 848,260 - ABZR87_RS04045 0.24 +0.1 848,337 + ABZR87_RS04045 0.32 -0.1 848,337 + ABZR87_RS04045 0.32 -0.4 848,337 + ABZR87_RS04045 0.32 -0.2 848,338 - ABZR87_RS04045 0.32 -0.5 848,338 - ABZR87_RS04045 0.32 -1.0 848,338 - ABZR87_RS04045 0.32 -1.5 848,338 - ABZR87_RS04045 0.32 -0.1 848,338 - ABZR87_RS04045 0.32 -1.5 848,338 - ABZR87_RS04045 0.32 +1.6 848,338 - ABZR87_RS04045 0.32 +0.2 848,349 + ABZR87_RS04045 0.33 +0.5 848,349 + ABZR87_RS04045 0.33 -0.3 848,349 + ABZR87_RS04045 0.33 +0.2 848,349 + ABZR87_RS04045 0.33 +0.3 848,350 - ABZR87_RS04045 0.33 -0.1 848,350 - ABZR87_RS04045 0.33 -0.3 848,400 + ABZR87_RS04045 0.38 -0.1 848,401 - ABZR87_RS04045 0.39 +0.4 848,401 - ABZR87_RS04045 0.39 -0.6 848,437 - ABZR87_RS04045 0.42 +0.3 848,574 + ABZR87_RS04045 0.57 +0.8 848,575 - ABZR87_RS04045 0.57 -1.6 848,575 - ABZR87_RS04045 0.57 -0.5 848,665 + ABZR87_RS04045 0.66 +1.4 848,666 - ABZR87_RS04045 0.66 +0.0 848,952 + -0.5 848,952 + -1.2 848,952 + +0.2 848,953 - -1.0 848,953 - +0.0 848,953 - -1.6 848,988 + -0.8 848,988 + +1.0 848,988 + -1.3 848,988 + -0.6 848,988 + -1.2 848,989 - +1.4 848,989 - +0.8 848,989 - -0.0 848,989 - +1.4 849,016 + -0.1 849,016 + +0.5 849,017 - -1.2 849,046 + +0.9 849,047 - +0.7 849,047 - +0.0 849,100 + +0.4 849,100 + +1.0 849,100 + -0.4 849,293 + ABZR87_RS04050 0.42 -1.0 849,358 + ABZR87_RS04050 0.56 -0.1 849,358 + ABZR87_RS04050 0.56 -0.5 849,358 + ABZR87_RS04050 0.56 -0.2 849,359 - ABZR87_RS04050 0.56 -0.0 849,359 - ABZR87_RS04050 0.56 -0.7 849,359 - ABZR87_RS04050 0.56 -0.0 849,359 - ABZR87_RS04050 0.56 -0.0 849,359 - ABZR87_RS04050 0.56 -0.3 849,359 - ABZR87_RS04050 0.56 +1.2 849,359 - ABZR87_RS04050 0.56 +3.0 849,436 + ABZR87_RS04050 0.73 +0.1 849,436 + ABZR87_RS04050 0.73 +0.3 849,437 - ABZR87_RS04050 0.73 -0.3 849,451 + ABZR87_RS04050 0.76 -1.7 849,451 + ABZR87_RS04050 0.76 -1.3 849,451 + ABZR87_RS04050 0.76 -0.8 849,451 + ABZR87_RS04050 0.76 -0.3 849,452 - ABZR87_RS04050 0.76 -1.6 849,452 - ABZR87_RS04050 0.76 +2.9 849,452 - ABZR87_RS04050 0.76 +0.1 849,452 - ABZR87_RS04050 0.76 -0.4 849,452 - ABZR87_RS04050 0.76 +0.0 849,452 - ABZR87_RS04050 0.76 -0.4 849,452 - ABZR87_RS04050 0.76 -0.1 849,541 + -0.3 849,541 + -0.4 849,541 + -0.9 849,541 + -0.2 849,541 + -0.4 849,542 - -1.1 849,654 + -1.1 849,654 + -0.9 849,655 - +0.7 849,669 + -0.2 849,669 + -0.1 849,669 + +0.5 849,669 + -0.2 849,670 - -0.4 849,709 + ABZR87_RS04055 0.11 -0.2 849,727 + ABZR87_RS04055 0.13 +0.2 849,805 + ABZR87_RS04055 0.20 +0.0 849,805 + ABZR87_RS04055 0.20 +0.4 849,805 + ABZR87_RS04055 0.20 +0.6 849,805 + ABZR87_RS04055 0.20 +0.0 849,806 - ABZR87_RS04055 0.20 -0.5 849,806 - ABZR87_RS04055 0.20 -0.4 849,909 + ABZR87_RS04055 0.29 -0.8 849,909 + ABZR87_RS04055 0.29 +0.6 849,909 + ABZR87_RS04055 0.29 +0.4 849,909 + ABZR87_RS04055 0.29 +0.3 849,909 + ABZR87_RS04055 0.29 +0.6 849,909 + ABZR87_RS04055 0.29 +0.8 849,909 + ABZR87_RS04055 0.29 -0.3 849,909 + ABZR87_RS04055 0.29 +0.1 849,909 + ABZR87_RS04055 0.29 +1.0 849,910 - ABZR87_RS04055 0.29 -0.1 849,910 - ABZR87_RS04055 0.29 +0.6 849,910 - ABZR87_RS04055 0.29 +1.0 849,910 - ABZR87_RS04055 0.29 +0.3 849,910 - ABZR87_RS04055 0.29 +0.5 849,910 - ABZR87_RS04055 0.29 +0.7 849,933 + ABZR87_RS04055 0.31 +0.6 849,933 + ABZR87_RS04055 0.31 +1.8 849,933 + ABZR87_RS04055 0.31 +0.9 849,933 + ABZR87_RS04055 0.31 -0.3 849,934 - ABZR87_RS04055 0.31 -0.3
Or see this region's nucleotide sequence