Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03995

Experiment: Ra3_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03985 and ABZR87_RS03990 are separated by 217 nucleotidesABZR87_RS03990 and ABZR87_RS03995 are separated by 12 nucleotidesABZR87_RS03995 and ABZR87_RS04000 overlap by 4 nucleotides ABZR87_RS03985: ABZR87_RS03985 - cupin domain-containing protein, at 836,777 to 837,262 _RS03985 ABZR87_RS03990: ABZR87_RS03990 - GFA family protein, at 837,480 to 837,827 _RS03990 ABZR87_RS03995: ABZR87_RS03995 - Rieske 2Fe-2S domain-containing protein, at 837,840 to 838,868 _RS03995 ABZR87_RS04000: ABZR87_RS04000 - GNAT family N-acetyltransferase, at 838,865 to 840,004 _RS04000 Position (kb) 837 838 839Strain fitness (log2 ratio) -2 -1 0 1 2 3at 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.958 kb on + strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.959 kb on - strand, within ABZR87_RS03985at 836.976 kb on + strand, within ABZR87_RS03985at 836.976 kb on + strand, within ABZR87_RS03985at 836.977 kb on - strand, within ABZR87_RS03985at 836.977 kb on - strand, within ABZR87_RS03985at 836.977 kb on - strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.980 kb on + strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 836.981 kb on - strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.061 kb on + strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.062 kb on - strand, within ABZR87_RS03985at 837.376 kb on + strandat 837.376 kb on + strandat 837.376 kb on + strandat 837.376 kb on + strandat 837.382 kb on + strandat 837.382 kb on + strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.383 kb on - strandat 837.429 kb on + strandat 837.429 kb on + strandat 837.429 kb on + strandat 837.429 kb on + strandat 837.430 kb on - strandat 837.430 kb on - strandat 837.431 kb on + strandat 837.431 kb on + strandat 837.432 kb on - strandat 837.432 kb on - strandat 837.432 kb on - strandat 837.488 kb on + strandat 837.488 kb on + strandat 837.488 kb on + strandat 837.489 kb on - strandat 837.489 kb on - strandat 837.489 kb on - strandat 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.651 kb on + strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.652 kb on - strand, within ABZR87_RS03990at 837.711 kb on + strand, within ABZR87_RS03990at 837.711 kb on + strand, within ABZR87_RS03990at 837.711 kb on + strand, within ABZR87_RS03990at 837.712 kb on - strand, within ABZR87_RS03990at 837.825 kb on + strandat 837.826 kb on - strandat 837.841 kb on + strandat 837.841 kb on + strandat 837.842 kb on - strandat 838.021 kb on + strand, within ABZR87_RS03995at 838.022 kb on - strand, within ABZR87_RS03995at 838.141 kb on + strand, within ABZR87_RS03995at 838.142 kb on - strand, within ABZR87_RS03995at 838.142 kb on - strand, within ABZR87_RS03995at 838.142 kb on - strand, within ABZR87_RS03995at 838.162 kb on + strand, within ABZR87_RS03995at 838.163 kb on - strand, within ABZR87_RS03995at 838.169 kb on - strand, within ABZR87_RS03995at 838.240 kb on - strand, within ABZR87_RS03995at 838.240 kb on - strand, within ABZR87_RS03995at 838.280 kb on - strand, within ABZR87_RS03995at 838.615 kb on - strand, within ABZR87_RS03995at 838.651 kb on + strand, within ABZR87_RS03995at 838.652 kb on - strand, within ABZR87_RS03995at 838.652 kb on - strand, within ABZR87_RS03995at 838.868 kb on + strandat 838.868 kb on + strandat 838.869 kb on - strandat 838.869 kb on - strandat 838.869 kb on - strandat 838.965 kb on + strandat 839.094 kb on + strand, within ABZR87_RS04000at 839.095 kb on - strand, within ABZR87_RS04000at 839.095 kb on - strand, within ABZR87_RS04000at 839.095 kb on - strand, within ABZR87_RS04000at 839.095 kb on - strand, within ABZR87_RS04000at 839.128 kb on - strand, within ABZR87_RS04000at 839.128 kb on - strand, within ABZR87_RS04000at 839.265 kb on + strand, within ABZR87_RS04000at 839.266 kb on - strand, within ABZR87_RS04000at 839.286 kb on + strand, within ABZR87_RS04000at 839.286 kb on + strand, within ABZR87_RS04000at 839.286 kb on + strand, within ABZR87_RS04000at 839.286 kb on + strand, within ABZR87_RS04000at 839.286 kb on + strand, within ABZR87_RS04000at 839.287 kb on - strand, within ABZR87_RS04000at 839.287 kb on - strand, within ABZR87_RS04000at 839.287 kb on - strand, within ABZR87_RS04000at 839.287 kb on - strand, within ABZR87_RS04000at 839.287 kb on - strand, within ABZR87_RS04000at 839.287 kb on - strand, within ABZR87_RS04000at 839.287 kb on - strand, within ABZR87_RS04000at 839.287 kb on - strand, within ABZR87_RS04000at 839.287 kb on - strand, within ABZR87_RS04000at 839.298 kb on + strand, within ABZR87_RS04000at 839.298 kb on + strand, within ABZR87_RS04000at 839.298 kb on + strand, within ABZR87_RS04000at 839.298 kb on + strand, within ABZR87_RS04000at 839.299 kb on - strand, within ABZR87_RS04000at 839.299 kb on - strand, within ABZR87_RS04000at 839.299 kb on - strand, within ABZR87_RS04000at 839.310 kb on + strand, within ABZR87_RS04000at 839.310 kb on + strand, within ABZR87_RS04000at 839.311 kb on - strand, within ABZR87_RS04000at 839.311 kb on - strand, within ABZR87_RS04000at 839.311 kb on - strand, within ABZR87_RS04000at 839.460 kb on + strand, within ABZR87_RS04000at 839.460 kb on + strand, within ABZR87_RS04000at 839.460 kb on + strand, within ABZR87_RS04000at 839.460 kb on + strand, within ABZR87_RS04000at 839.460 kb on + strand, within ABZR87_RS04000at 839.461 kb on - strand, within ABZR87_RS04000at 839.461 kb on - strand, within ABZR87_RS04000at 839.461 kb on - strand, within ABZR87_RS04000at 839.461 kb on - strand, within ABZR87_RS04000at 839.461 kb on - strand, within ABZR87_RS04000at 839.461 kb on - strand, within ABZR87_RS04000at 839.582 kb on + strand, within ABZR87_RS04000at 839.582 kb on + strand, within ABZR87_RS04000at 839.582 kb on + strand, within ABZR87_RS04000at 839.583 kb on - strand, within ABZR87_RS04000at 839.583 kb on - strand, within ABZR87_RS04000at 839.636 kb on - strand, within ABZR87_RS04000at 839.636 kb on - strand, within ABZR87_RS04000at 839.695 kb on + strand, within ABZR87_RS04000at 839.695 kb on + strand, within ABZR87_RS04000at 839.696 kb on - strand, within ABZR87_RS04000at 839.696 kb on - strand, within ABZR87_RS04000at 839.696 kb on - strand, within ABZR87_RS04000at 839.772 kb on + strand, within ABZR87_RS04000at 839.781 kb on + strand, within ABZR87_RS04000at 839.781 kb on + strand, within ABZR87_RS04000at 839.781 kb on + strand, within ABZR87_RS04000at 839.782 kb on - strand, within ABZR87_RS04000at 839.782 kb on - strand, within ABZR87_RS04000at 839.782 kb on - strand, within ABZR87_RS04000

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_1
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836,958 + ABZR87_RS03985 0.37 -1.0
836,958 + ABZR87_RS03985 0.37 -0.5
836,958 + ABZR87_RS03985 0.37 -0.1
836,958 + ABZR87_RS03985 0.37 +0.0
836,958 + ABZR87_RS03985 0.37 -1.3
836,958 + ABZR87_RS03985 0.37 -2.5
836,959 - ABZR87_RS03985 0.37 +0.7
836,959 - ABZR87_RS03985 0.37 +0.7
836,959 - ABZR87_RS03985 0.37 -0.5
836,959 - ABZR87_RS03985 0.37 +0.7
836,959 - ABZR87_RS03985 0.37 +0.2
836,959 - ABZR87_RS03985 0.37 +0.1
836,959 - ABZR87_RS03985 0.37 -0.4
836,976 + ABZR87_RS03985 0.41 -0.8
836,976 + ABZR87_RS03985 0.41 -0.0
836,977 - ABZR87_RS03985 0.41 +0.0
836,977 - ABZR87_RS03985 0.41 -1.3
836,977 - ABZR87_RS03985 0.41 -0.0
836,980 + ABZR87_RS03985 0.42 +0.5
836,980 + ABZR87_RS03985 0.42 +0.2
836,980 + ABZR87_RS03985 0.42 -0.5
836,980 + ABZR87_RS03985 0.42 +0.0
836,980 + ABZR87_RS03985 0.42 -0.3
836,980 + ABZR87_RS03985 0.42 +0.8
836,980 + ABZR87_RS03985 0.42 -0.6
836,980 + ABZR87_RS03985 0.42 +0.1
836,980 + ABZR87_RS03985 0.42 +0.8
836,980 + ABZR87_RS03985 0.42 +0.4
836,980 + ABZR87_RS03985 0.42 +0.4
836,980 + ABZR87_RS03985 0.42 +0.7
836,980 + ABZR87_RS03985 0.42 +0.4
836,980 + ABZR87_RS03985 0.42 +0.9
836,981 - ABZR87_RS03985 0.42 +1.8
836,981 - ABZR87_RS03985 0.42 -1.0
836,981 - ABZR87_RS03985 0.42 +0.4
836,981 - ABZR87_RS03985 0.42 +0.8
836,981 - ABZR87_RS03985 0.42 -0.9
836,981 - ABZR87_RS03985 0.42 -0.7
836,981 - ABZR87_RS03985 0.42 +0.4
836,981 - ABZR87_RS03985 0.42 -0.0
836,981 - ABZR87_RS03985 0.42 -0.9
836,981 - ABZR87_RS03985 0.42 -0.7
836,981 - ABZR87_RS03985 0.42 -0.2
836,981 - ABZR87_RS03985 0.42 +0.8
836,981 - ABZR87_RS03985 0.42 -0.1
836,981 - ABZR87_RS03985 0.42 -2.3
837,061 + ABZR87_RS03985 0.58 -0.7
837,061 + ABZR87_RS03985 0.58 +0.5
837,061 + ABZR87_RS03985 0.58 +0.4
837,061 + ABZR87_RS03985 0.58 -1.0
837,061 + ABZR87_RS03985 0.58 -2.4
837,061 + ABZR87_RS03985 0.58 -0.9
837,062 - ABZR87_RS03985 0.59 +0.6
837,062 - ABZR87_RS03985 0.59 +0.8
837,062 - ABZR87_RS03985 0.59 -2.3
837,062 - ABZR87_RS03985 0.59 -1.9
837,062 - ABZR87_RS03985 0.59 -0.2
837,062 - ABZR87_RS03985 0.59 +0.7
837,376 + -0.9
837,376 + +0.9
837,376 + +0.8
837,376 + -0.2
837,382 + +0.6
837,382 + +0.2
837,383 - -0.7
837,383 - +1.0
837,383 - -0.6
837,383 - +0.6
837,383 - -0.6
837,383 - +0.6
837,429 + +0.7
837,429 + -1.1
837,429 + +1.1
837,429 + -1.0
837,430 - +0.4
837,430 - -0.0
837,431 + -2.4
837,431 + -0.0
837,432 - -0.5
837,432 - +0.3
837,432 - +0.7
837,488 + +0.6
837,488 + -0.6
837,488 + +0.5
837,489 - -0.2
837,489 - -1.2
837,489 - -1.2
837,651 + ABZR87_RS03990 0.49 -0.0
837,651 + ABZR87_RS03990 0.49 -0.6
837,651 + ABZR87_RS03990 0.49 +0.9
837,651 + ABZR87_RS03990 0.49 +0.8
837,651 + ABZR87_RS03990 0.49 +0.5
837,651 + ABZR87_RS03990 0.49 +0.1
837,651 + ABZR87_RS03990 0.49 +1.0
837,651 + ABZR87_RS03990 0.49 +0.7
837,652 - ABZR87_RS03990 0.49 -1.1
837,652 - ABZR87_RS03990 0.49 +1.1
837,652 - ABZR87_RS03990 0.49 -0.3
837,652 - ABZR87_RS03990 0.49 -1.0
837,652 - ABZR87_RS03990 0.49 -0.3
837,711 + ABZR87_RS03990 0.66 +0.2
837,711 + ABZR87_RS03990 0.66 +0.7
837,711 + ABZR87_RS03990 0.66 +1.4
837,712 - ABZR87_RS03990 0.67 -0.1
837,825 + -0.8
837,826 - +0.4
837,841 + +1.1
837,841 + +0.3
837,842 - +0.5
838,021 + ABZR87_RS03995 0.18 +1.2
838,022 - ABZR87_RS03995 0.18 +0.2
838,141 + ABZR87_RS03995 0.29 +1.5
838,142 - ABZR87_RS03995 0.29 -0.7
838,142 - ABZR87_RS03995 0.29 -1.1
838,142 - ABZR87_RS03995 0.29 +0.7
838,162 + ABZR87_RS03995 0.31 +1.5
838,163 - ABZR87_RS03995 0.31 +1.0
838,169 - ABZR87_RS03995 0.32 -1.1
838,240 - ABZR87_RS03995 0.39 +0.9
838,240 - ABZR87_RS03995 0.39 -0.1
838,280 - ABZR87_RS03995 0.43 +0.2
838,615 - ABZR87_RS03995 0.75 +1.7
838,651 + ABZR87_RS03995 0.79 +0.2
838,652 - ABZR87_RS03995 0.79 +0.0
838,652 - ABZR87_RS03995 0.79 +0.8
838,868 + -0.4
838,868 + +1.2
838,869 - +0.5
838,869 - +0.5
838,869 - +0.6
838,965 + +0.9
839,094 + ABZR87_RS04000 0.20 -1.0
839,095 - ABZR87_RS04000 0.20 +2.7
839,095 - ABZR87_RS04000 0.20 +0.8
839,095 - ABZR87_RS04000 0.20 +1.0
839,095 - ABZR87_RS04000 0.20 +0.9
839,128 - ABZR87_RS04000 0.23 -0.7
839,128 - ABZR87_RS04000 0.23 -0.4
839,265 + ABZR87_RS04000 0.35 -0.5
839,266 - ABZR87_RS04000 0.35 +0.4
839,286 + ABZR87_RS04000 0.37 -0.1
839,286 + ABZR87_RS04000 0.37 +0.8
839,286 + ABZR87_RS04000 0.37 -0.3
839,286 + ABZR87_RS04000 0.37 +1.4
839,286 + ABZR87_RS04000 0.37 +0.6
839,287 - ABZR87_RS04000 0.37 -0.8
839,287 - ABZR87_RS04000 0.37 +0.1
839,287 - ABZR87_RS04000 0.37 +1.8
839,287 - ABZR87_RS04000 0.37 +0.3
839,287 - ABZR87_RS04000 0.37 -0.7
839,287 - ABZR87_RS04000 0.37 -0.4
839,287 - ABZR87_RS04000 0.37 -0.3
839,287 - ABZR87_RS04000 0.37 +0.9
839,287 - ABZR87_RS04000 0.37 -1.8
839,298 + ABZR87_RS04000 0.38 +0.6
839,298 + ABZR87_RS04000 0.38 +0.2
839,298 + ABZR87_RS04000 0.38 +0.7
839,298 + ABZR87_RS04000 0.38 -0.3
839,299 - ABZR87_RS04000 0.38 -0.1
839,299 - ABZR87_RS04000 0.38 +0.3
839,299 - ABZR87_RS04000 0.38 +0.7
839,310 + ABZR87_RS04000 0.39 -1.0
839,310 + ABZR87_RS04000 0.39 +0.2
839,311 - ABZR87_RS04000 0.39 -1.8
839,311 - ABZR87_RS04000 0.39 +0.5
839,311 - ABZR87_RS04000 0.39 +0.4
839,460 + ABZR87_RS04000 0.52 +1.0
839,460 + ABZR87_RS04000 0.52 -0.2
839,460 + ABZR87_RS04000 0.52 -1.6
839,460 + ABZR87_RS04000 0.52 +0.4
839,460 + ABZR87_RS04000 0.52 -0.4
839,461 - ABZR87_RS04000 0.52 +0.7
839,461 - ABZR87_RS04000 0.52 -0.2
839,461 - ABZR87_RS04000 0.52 +0.2
839,461 - ABZR87_RS04000 0.52 -0.2
839,461 - ABZR87_RS04000 0.52 -0.3
839,461 - ABZR87_RS04000 0.52 -0.7
839,582 + ABZR87_RS04000 0.63 -1.9
839,582 + ABZR87_RS04000 0.63 +0.0
839,582 + ABZR87_RS04000 0.63 -0.5
839,583 - ABZR87_RS04000 0.63 +3.0
839,583 - ABZR87_RS04000 0.63 +0.7
839,636 - ABZR87_RS04000 0.68 +1.1
839,636 - ABZR87_RS04000 0.68 -0.8
839,695 + ABZR87_RS04000 0.73 +1.3
839,695 + ABZR87_RS04000 0.73 -0.2
839,696 - ABZR87_RS04000 0.73 +0.5
839,696 - ABZR87_RS04000 0.73 -0.2
839,696 - ABZR87_RS04000 0.73 -1.9
839,772 + ABZR87_RS04000 0.80 -0.4
839,781 + ABZR87_RS04000 0.80 +0.7
839,781 + ABZR87_RS04000 0.80 +0.3
839,781 + ABZR87_RS04000 0.80 +0.2
839,782 - ABZR87_RS04000 0.80 +0.6
839,782 - ABZR87_RS04000 0.80 -1.4
839,782 - ABZR87_RS04000 0.80 +1.0

Or see this region's nucleotide sequence