Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03210

Experiment: Ra3_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03205 and ABZR87_RS03210 are separated by 145 nucleotidesABZR87_RS03210 and ABZR87_RS03215 are separated by 28 nucleotidesABZR87_RS03215 and ABZR87_RS03220 are separated by 10 nucleotides ABZR87_RS03205: ABZR87_RS03205 - transporter substrate-binding domain-containing protein, at 672,628 to 676,935 _RS03205 ABZR87_RS03210: ABZR87_RS03210 - NAD(P)/FAD-dependent oxidoreductase, at 677,081 to 678,703 _RS03210 ABZR87_RS03215: ABZR87_RS03215 - SDR family NAD(P)-dependent oxidoreductase, at 678,732 to 679,622 _RS03215 ABZR87_RS03220: ABZR87_RS03220 - alpha/beta hydrolase, at 679,633 to 680,655 _RS03220 Position (kb) 677 678 679Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 676.167 kb on + strand, within ABZR87_RS03205at 676.167 kb on + strand, within ABZR87_RS03205at 676.167 kb on + strand, within ABZR87_RS03205at 676.167 kb on + strand, within ABZR87_RS03205at 676.167 kb on + strand, within ABZR87_RS03205at 676.167 kb on + strand, within ABZR87_RS03205at 676.167 kb on + strand, within ABZR87_RS03205at 676.167 kb on + strand, within ABZR87_RS03205at 676.167 kb on + strand, within ABZR87_RS03205at 676.167 kb on + strand, within ABZR87_RS03205at 676.168 kb on - strand, within ABZR87_RS03205at 676.168 kb on - strand, within ABZR87_RS03205at 676.168 kb on - strand, within ABZR87_RS03205at 676.168 kb on - strand, within ABZR87_RS03205at 676.168 kb on - strand, within ABZR87_RS03205at 676.168 kb on - strand, within ABZR87_RS03205at 676.168 kb on - strand, within ABZR87_RS03205at 676.168 kb on - strand, within ABZR87_RS03205at 676.356 kb on + strand, within ABZR87_RS03205at 676.357 kb on - strand, within ABZR87_RS03205at 676.357 kb on - strand, within ABZR87_RS03205at 676.874 kb on + strandat 676.874 kb on + strandat 676.875 kb on - strandat 676.934 kb on - strandat 676.971 kb on + strandat 677.045 kb on + strandat 677.324 kb on + strand, within ABZR87_RS03210at 677.325 kb on - strand, within ABZR87_RS03210at 677.325 kb on - strand, within ABZR87_RS03210at 677.366 kb on + strand, within ABZR87_RS03210at 677.366 kb on + strand, within ABZR87_RS03210at 677.366 kb on + strand, within ABZR87_RS03210at 677.366 kb on + strand, within ABZR87_RS03210at 677.366 kb on + strand, within ABZR87_RS03210at 677.366 kb on + strand, within ABZR87_RS03210at 677.366 kb on + strand, within ABZR87_RS03210at 677.367 kb on - strand, within ABZR87_RS03210at 677.367 kb on - strand, within ABZR87_RS03210at 677.367 kb on - strand, within ABZR87_RS03210at 677.367 kb on - strand, within ABZR87_RS03210at 677.367 kb on - strand, within ABZR87_RS03210at 677.367 kb on - strand, within ABZR87_RS03210at 677.367 kb on - strand, within ABZR87_RS03210at 677.393 kb on + strand, within ABZR87_RS03210at 677.394 kb on - strand, within ABZR87_RS03210at 677.397 kb on + strand, within ABZR87_RS03210at 677.397 kb on + strand, within ABZR87_RS03210at 677.398 kb on - strand, within ABZR87_RS03210at 677.398 kb on - strand, within ABZR87_RS03210at 677.398 kb on - strand, within ABZR87_RS03210at 677.496 kb on + strand, within ABZR87_RS03210at 677.496 kb on + strand, within ABZR87_RS03210at 677.496 kb on + strand, within ABZR87_RS03210at 677.496 kb on + strand, within ABZR87_RS03210at 677.496 kb on + strand, within ABZR87_RS03210at 677.497 kb on - strand, within ABZR87_RS03210at 677.497 kb on - strand, within ABZR87_RS03210at 677.639 kb on + strand, within ABZR87_RS03210at 677.639 kb on + strand, within ABZR87_RS03210at 677.639 kb on + strand, within ABZR87_RS03210at 677.639 kb on + strand, within ABZR87_RS03210at 677.639 kb on + strand, within ABZR87_RS03210at 677.640 kb on - strand, within ABZR87_RS03210at 677.640 kb on - strand, within ABZR87_RS03210at 677.640 kb on - strand, within ABZR87_RS03210at 677.738 kb on + strand, within ABZR87_RS03210at 677.738 kb on + strand, within ABZR87_RS03210at 677.739 kb on - strand, within ABZR87_RS03210at 677.739 kb on - strand, within ABZR87_RS03210at 677.739 kb on - strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.852 kb on + strand, within ABZR87_RS03210at 677.853 kb on - strand, within ABZR87_RS03210at 677.853 kb on - strand, within ABZR87_RS03210at 677.853 kb on - strand, within ABZR87_RS03210at 677.987 kb on + strand, within ABZR87_RS03210at 677.987 kb on + strand, within ABZR87_RS03210at 677.987 kb on + strand, within ABZR87_RS03210at 677.988 kb on - strand, within ABZR87_RS03210at 677.988 kb on - strand, within ABZR87_RS03210at 678.026 kb on + strand, within ABZR87_RS03210at 678.027 kb on - strand, within ABZR87_RS03210at 678.027 kb on - strand, within ABZR87_RS03210at 678.029 kb on + strand, within ABZR87_RS03210at 678.030 kb on - strand, within ABZR87_RS03210at 678.104 kb on - strand, within ABZR87_RS03210at 678.248 kb on + strand, within ABZR87_RS03210at 678.248 kb on + strand, within ABZR87_RS03210at 678.249 kb on - strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.356 kb on + strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.357 kb on - strand, within ABZR87_RS03210at 678.411 kb on + strand, within ABZR87_RS03210at 678.411 kb on + strand, within ABZR87_RS03210at 678.411 kb on + strand, within ABZR87_RS03210at 678.411 kb on + strand, within ABZR87_RS03210at 678.412 kb on - strand, within ABZR87_RS03210at 678.500 kb on + strand, within ABZR87_RS03210at 678.501 kb on - strand, within ABZR87_RS03210at 678.501 kb on - strand, within ABZR87_RS03210at 678.951 kb on + strand, within ABZR87_RS03215at 678.951 kb on + strand, within ABZR87_RS03215at 678.951 kb on + strand, within ABZR87_RS03215at 678.952 kb on - strand, within ABZR87_RS03215at 679.203 kb on + strand, within ABZR87_RS03215at 679.204 kb on - strand, within ABZR87_RS03215at 679.204 kb on - strand, within ABZR87_RS03215at 679.204 kb on - strand, within ABZR87_RS03215at 679.218 kb on + strand, within ABZR87_RS03215at 679.219 kb on - strand, within ABZR87_RS03215at 679.219 kb on - strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.321 kb on + strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.322 kb on - strand, within ABZR87_RS03215at 679.438 kb on + strand, within ABZR87_RS03215at 679.438 kb on + strand, within ABZR87_RS03215at 679.438 kb on + strand, within ABZR87_RS03215at 679.439 kb on - strand, within ABZR87_RS03215at 679.621 kb on - strandat 679.621 kb on - strandat 679.621 kb on - strandat 679.621 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_1
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676,167 + ABZR87_RS03205 0.82 +0.1
676,167 + ABZR87_RS03205 0.82 +1.6
676,167 + ABZR87_RS03205 0.82 +0.1
676,167 + ABZR87_RS03205 0.82 -0.8
676,167 + ABZR87_RS03205 0.82 +1.2
676,167 + ABZR87_RS03205 0.82 +0.1
676,167 + ABZR87_RS03205 0.82 +0.7
676,167 + ABZR87_RS03205 0.82 +0.1
676,167 + ABZR87_RS03205 0.82 -0.8
676,167 + ABZR87_RS03205 0.82 -0.6
676,168 - ABZR87_RS03205 0.82 -0.4
676,168 - ABZR87_RS03205 0.82 -1.0
676,168 - ABZR87_RS03205 0.82 -1.4
676,168 - ABZR87_RS03205 0.82 +0.3
676,168 - ABZR87_RS03205 0.82 -0.2
676,168 - ABZR87_RS03205 0.82 -0.0
676,168 - ABZR87_RS03205 0.82 +0.9
676,168 - ABZR87_RS03205 0.82 -0.7
676,356 + ABZR87_RS03205 0.87 +0.3
676,357 - ABZR87_RS03205 0.87 +0.6
676,357 - ABZR87_RS03205 0.87 -0.8
676,874 + +0.8
676,874 + +1.0
676,875 - -0.3
676,934 - +0.4
676,971 + +0.4
677,045 + -2.0
677,324 + ABZR87_RS03210 0.15 +0.4
677,325 - ABZR87_RS03210 0.15 -1.9
677,325 - ABZR87_RS03210 0.15 -0.2
677,366 + ABZR87_RS03210 0.18 +1.3
677,366 + ABZR87_RS03210 0.18 +0.2
677,366 + ABZR87_RS03210 0.18 -0.4
677,366 + ABZR87_RS03210 0.18 +0.4
677,366 + ABZR87_RS03210 0.18 +0.6
677,366 + ABZR87_RS03210 0.18 -1.1
677,366 + ABZR87_RS03210 0.18 +0.5
677,367 - ABZR87_RS03210 0.18 -0.1
677,367 - ABZR87_RS03210 0.18 -0.4
677,367 - ABZR87_RS03210 0.18 -1.1
677,367 - ABZR87_RS03210 0.18 -0.4
677,367 - ABZR87_RS03210 0.18 +2.4
677,367 - ABZR87_RS03210 0.18 +0.3
677,367 - ABZR87_RS03210 0.18 -1.2
677,393 + ABZR87_RS03210 0.19 -0.4
677,394 - ABZR87_RS03210 0.19 +1.8
677,397 + ABZR87_RS03210 0.19 -2.0
677,397 + ABZR87_RS03210 0.19 +0.4
677,398 - ABZR87_RS03210 0.20 +0.2
677,398 - ABZR87_RS03210 0.20 -0.7
677,398 - ABZR87_RS03210 0.20 +0.7
677,496 + ABZR87_RS03210 0.26 -0.7
677,496 + ABZR87_RS03210 0.26 -0.2
677,496 + ABZR87_RS03210 0.26 +0.7
677,496 + ABZR87_RS03210 0.26 +0.1
677,496 + ABZR87_RS03210 0.26 -0.9
677,497 - ABZR87_RS03210 0.26 -1.2
677,497 - ABZR87_RS03210 0.26 +0.4
677,639 + ABZR87_RS03210 0.34 +1.4
677,639 + ABZR87_RS03210 0.34 +0.8
677,639 + ABZR87_RS03210 0.34 -0.3
677,639 + ABZR87_RS03210 0.34 -1.1
677,639 + ABZR87_RS03210 0.34 +0.2
677,640 - ABZR87_RS03210 0.34 +1.0
677,640 - ABZR87_RS03210 0.34 +0.2
677,640 - ABZR87_RS03210 0.34 +0.8
677,738 + ABZR87_RS03210 0.40 +0.7
677,738 + ABZR87_RS03210 0.40 +0.6
677,739 - ABZR87_RS03210 0.41 +0.0
677,739 - ABZR87_RS03210 0.41 -0.5
677,739 - ABZR87_RS03210 0.41 +0.5
677,852 + ABZR87_RS03210 0.48 +1.3
677,852 + ABZR87_RS03210 0.48 +2.6
677,852 + ABZR87_RS03210 0.48 -0.1
677,852 + ABZR87_RS03210 0.48 -0.3
677,852 + ABZR87_RS03210 0.48 +0.7
677,853 - ABZR87_RS03210 0.48 -0.6
677,853 - ABZR87_RS03210 0.48 +0.2
677,853 - ABZR87_RS03210 0.48 +0.2
677,987 + ABZR87_RS03210 0.56 -0.9
677,987 + ABZR87_RS03210 0.56 -0.3
677,987 + ABZR87_RS03210 0.56 +1.1
677,988 - ABZR87_RS03210 0.56 -1.8
677,988 - ABZR87_RS03210 0.56 -0.0
678,026 + ABZR87_RS03210 0.58 +1.1
678,027 - ABZR87_RS03210 0.58 +0.5
678,027 - ABZR87_RS03210 0.58 -1.1
678,029 + ABZR87_RS03210 0.58 -1.0
678,030 - ABZR87_RS03210 0.58 -1.3
678,104 - ABZR87_RS03210 0.63 +0.2
678,248 + ABZR87_RS03210 0.72 -1.1
678,248 + ABZR87_RS03210 0.72 +1.3
678,249 - ABZR87_RS03210 0.72 +0.4
678,356 + ABZR87_RS03210 0.79 -0.4
678,356 + ABZR87_RS03210 0.79 +0.9
678,356 + ABZR87_RS03210 0.79 -0.2
678,356 + ABZR87_RS03210 0.79 +0.4
678,356 + ABZR87_RS03210 0.79 +0.9
678,356 + ABZR87_RS03210 0.79 -1.6
678,356 + ABZR87_RS03210 0.79 +0.4
678,356 + ABZR87_RS03210 0.79 -0.1
678,356 + ABZR87_RS03210 0.79 -1.4
678,356 + ABZR87_RS03210 0.79 +0.6
678,357 - ABZR87_RS03210 0.79 +1.0
678,357 - ABZR87_RS03210 0.79 -0.2
678,357 - ABZR87_RS03210 0.79 -3.0
678,357 - ABZR87_RS03210 0.79 -0.6
678,357 - ABZR87_RS03210 0.79 +0.2
678,411 + ABZR87_RS03210 0.82 +1.0
678,411 + ABZR87_RS03210 0.82 -0.9
678,411 + ABZR87_RS03210 0.82 -0.4
678,411 + ABZR87_RS03210 0.82 +0.1
678,412 - ABZR87_RS03210 0.82 -0.1
678,500 + ABZR87_RS03210 0.87 +2.0
678,501 - ABZR87_RS03210 0.87 -0.6
678,501 - ABZR87_RS03210 0.87 -1.5
678,951 + ABZR87_RS03215 0.25 -0.9
678,951 + ABZR87_RS03215 0.25 -0.1
678,951 + ABZR87_RS03215 0.25 +0.6
678,952 - ABZR87_RS03215 0.25 +0.4
679,203 + ABZR87_RS03215 0.53 -0.6
679,204 - ABZR87_RS03215 0.53 +0.2
679,204 - ABZR87_RS03215 0.53 -0.2
679,204 - ABZR87_RS03215 0.53 -0.3
679,218 + ABZR87_RS03215 0.55 -0.5
679,219 - ABZR87_RS03215 0.55 -1.5
679,219 - ABZR87_RS03215 0.55 -1.2
679,321 + ABZR87_RS03215 0.66 +0.9
679,321 + ABZR87_RS03215 0.66 -0.4
679,321 + ABZR87_RS03215 0.66 -0.4
679,321 + ABZR87_RS03215 0.66 -0.0
679,321 + ABZR87_RS03215 0.66 +0.3
679,321 + ABZR87_RS03215 0.66 -0.1
679,322 - ABZR87_RS03215 0.66 +0.5
679,322 - ABZR87_RS03215 0.66 -0.8
679,322 - ABZR87_RS03215 0.66 -0.3
679,322 - ABZR87_RS03215 0.66 +0.2
679,322 - ABZR87_RS03215 0.66 -1.4
679,322 - ABZR87_RS03215 0.66 -0.1
679,322 - ABZR87_RS03215 0.66 -0.3
679,438 + ABZR87_RS03215 0.79 +0.9
679,438 + ABZR87_RS03215 0.79 -0.4
679,438 + ABZR87_RS03215 0.79 -0.4
679,439 - ABZR87_RS03215 0.79 +0.6
679,621 - +0.1
679,621 - +0.9
679,621 - +0.8
679,621 - +0.6

Or see this region's nucleotide sequence