Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02160 and ABZR87_RS02165 are separated by 10 nucleotides ABZR87_RS02165 and ABZR87_RS02170 overlap by 4 nucleotides ABZR87_RS02170 and ABZR87_RS02175 are separated by 414 nucleotides
ABZR87_RS02160: ABZR87_RS02160 - indole-3-glycerol phosphate synthase TrpC, at 462,732 to 463,535
_RS02160
ABZR87_RS02165: ABZR87_RS02165 - CYTH domain-containing protein, at 463,546 to 464,205
_RS02165
ABZR87_RS02170: ABZR87_RS02170 - uracil-DNA glycosylase, at 464,202 to 464,993
_RS02170
ABZR87_RS02175: ABZR87_RS02175 - FUSC family protein, at 465,408 to 467,624
_RS02175
Position (kb) 464
465 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 463.577 kb on + strand at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.661 kb on - strand, within ABZR87_RS02165 at 463.663 kb on + strand, within ABZR87_RS02165 at 463.663 kb on + strand, within ABZR87_RS02165 at 463.664 kb on - strand, within ABZR87_RS02165 at 463.764 kb on + strand, within ABZR87_RS02165 at 463.764 kb on + strand, within ABZR87_RS02165 at 463.765 kb on - strand, within ABZR87_RS02165 at 463.765 kb on - strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.867 kb on + strand, within ABZR87_RS02165 at 463.868 kb on + strand, within ABZR87_RS02165 at 463.868 kb on - strand, within ABZR87_RS02165 at 463.868 kb on - strand, within ABZR87_RS02165 at 463.868 kb on - strand, within ABZR87_RS02165 at 465.324 kb on + strand at 465.325 kb on - strand at 465.409 kb on + strand at 465.409 kb on + strand at 465.410 kb on - strand at 465.410 kb on - strand at 465.410 kb on - strand at 465.422 kb on + strand at 465.422 kb on + strand at 465.422 kb on + strand at 465.423 kb on - strand at 465.790 kb on + strand, within ABZR87_RS02175 at 465.790 kb on + strand, within ABZR87_RS02175 at 465.790 kb on + strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175 at 465.791 kb on - strand, within ABZR87_RS02175
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 463,577 + +1.2 463,661 - ABZR87_RS02165 0.17 -0.9 463,661 - ABZR87_RS02165 0.17 -1.9 463,661 - ABZR87_RS02165 0.17 +0.1 463,661 - ABZR87_RS02165 0.17 -2.0 463,663 + ABZR87_RS02165 0.18 +0.7 463,663 + ABZR87_RS02165 0.18 -0.2 463,664 - ABZR87_RS02165 0.18 -0.7 463,764 + ABZR87_RS02165 0.33 +1.7 463,764 + ABZR87_RS02165 0.33 -0.8 463,765 - ABZR87_RS02165 0.33 +4.2 463,765 - ABZR87_RS02165 0.33 -1.2 463,867 + ABZR87_RS02165 0.49 +1.3 463,867 + ABZR87_RS02165 0.49 +1.3 463,867 + ABZR87_RS02165 0.49 -0.3 463,867 + ABZR87_RS02165 0.49 +0.8 463,868 + ABZR87_RS02165 0.49 -0.0 463,868 - ABZR87_RS02165 0.49 +0.4 463,868 - ABZR87_RS02165 0.49 -1.7 463,868 - ABZR87_RS02165 0.49 -1.1 465,324 + -0.2 465,325 - -1.4 465,409 + -0.7 465,409 + +0.1 465,410 - +0.1 465,410 - -0.3 465,410 - +1.1 465,422 + -0.8 465,422 + +1.4 465,422 + +0.5 465,423 - -0.3 465,790 + ABZR87_RS02175 0.17 +0.6 465,790 + ABZR87_RS02175 0.17 -0.5 465,790 + ABZR87_RS02175 0.17 +0.2 465,791 - ABZR87_RS02175 0.17 +0.7 465,791 - ABZR87_RS02175 0.17 -0.1 465,791 - ABZR87_RS02175 0.17 +1.1 465,791 - ABZR87_RS02175 0.17 +0.7 465,791 - ABZR87_RS02175 0.17 +0.3 465,791 - ABZR87_RS02175 0.17 -0.8
Or see this region's nucleotide sequence