Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01775 and ABZR87_RS01780 are separated by 65 nucleotides ABZR87_RS01780 and ABZR87_RS01785 are separated by 12 nucleotides ABZR87_RS01785 and ABZR87_RS01790 are separated by 66 nucleotides ABZR87_RS01790 and ABZR87_RS01795 are separated by 22 nucleotides
ABZR87_RS01775: ABZR87_RS01775 - hypoxanthine-guanine phosphoribosyltransferase, at 378,620 to 379,168
_RS01775
ABZR87_RS01780: ABZR87_RS01780 - MarC family protein, at 379,234 to 379,827
_RS01780
ABZR87_RS01785: ABZR87_RS01785 - 2OG-Fe(II) oxygenase, at 379,840 to 380,706
_RS01785
ABZR87_RS01790: ABZR87_RS01790 - lytic transglycosylase domain-containing protein, at 380,773 to 381,534
_RS01790
ABZR87_RS01795: ABZR87_RS01795 - proline--tRNA ligase, at 381,557 to 383,281
_RS01795
Position (kb) 379
380
381 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7
8 at 378.916 kb on + strand, within ABZR87_RS01775 at 378.917 kb on - strand, within ABZR87_RS01775 at 379.008 kb on - strand, within ABZR87_RS01775 at 379.055 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.091 kb on + strand, within ABZR87_RS01775 at 379.092 kb on - strand, within ABZR87_RS01775 at 379.124 kb on + strand at 379.125 kb on - strand at 379.125 kb on - strand at 379.405 kb on + strand, within ABZR87_RS01780 at 379.405 kb on + strand, within ABZR87_RS01780 at 379.821 kb on - strand at 379.821 kb on - strand at 379.856 kb on + strand at 379.857 kb on - strand at 379.857 kb on - strand at 379.961 kb on + strand, within ABZR87_RS01785 at 379.962 kb on - strand, within ABZR87_RS01785 at 379.962 kb on - strand, within ABZR87_RS01785 at 379.962 kb on - strand, within ABZR87_RS01785 at 380.054 kb on + strand, within ABZR87_RS01785 at 380.054 kb on + strand, within ABZR87_RS01785 at 380.054 kb on + strand, within ABZR87_RS01785 at 380.055 kb on - strand, within ABZR87_RS01785 at 380.055 kb on - strand, within ABZR87_RS01785 at 380.148 kb on - strand, within ABZR87_RS01785 at 380.165 kb on + strand, within ABZR87_RS01785 at 380.165 kb on + strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.166 kb on - strand, within ABZR87_RS01785 at 380.316 kb on + strand, within ABZR87_RS01785 at 380.463 kb on + strand, within ABZR87_RS01785 at 380.463 kb on + strand, within ABZR87_RS01785 at 380.464 kb on - strand, within ABZR87_RS01785 at 380.589 kb on - strand, within ABZR87_RS01785 at 380.589 kb on - strand, within ABZR87_RS01785 at 380.742 kb on + strand at 380.742 kb on + strand at 380.742 kb on + strand at 380.743 kb on - strand at 380.743 kb on - strand at 380.743 kb on - strand at 380.743 kb on - strand at 380.747 kb on + strand at 380.748 kb on - strand at 380.748 kb on - strand at 380.748 kb on - strand at 380.802 kb on + strand at 380.802 kb on + strand at 380.802 kb on + strand at 380.803 kb on - strand at 380.803 kb on - strand at 380.803 kb on - strand at 380.803 kb on - strand at 380.921 kb on + strand, within ABZR87_RS01790 at 380.922 kb on - strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.987 kb on + strand, within ABZR87_RS01790 at 380.988 kb on - strand, within ABZR87_RS01790 at 380.988 kb on - strand, within ABZR87_RS01790 at 380.988 kb on - strand, within ABZR87_RS01790 at 381.005 kb on + strand, within ABZR87_RS01790 at 381.005 kb on + strand, within ABZR87_RS01790 at 381.006 kb on - strand, within ABZR87_RS01790 at 381.032 kb on + strand, within ABZR87_RS01790 at 381.032 kb on + strand, within ABZR87_RS01790 at 381.033 kb on - strand, within ABZR87_RS01790 at 381.033 kb on - strand, within ABZR87_RS01790 at 381.033 kb on - strand, within ABZR87_RS01790 at 381.056 kb on + strand, within ABZR87_RS01790 at 381.057 kb on - strand, within ABZR87_RS01790 at 381.170 kb on + strand, within ABZR87_RS01790 at 381.170 kb on + strand, within ABZR87_RS01790 at 381.170 kb on + strand, within ABZR87_RS01790 at 381.170 kb on + strand, within ABZR87_RS01790 at 381.171 kb on - strand, within ABZR87_RS01790 at 381.171 kb on - strand, within ABZR87_RS01790 at 381.171 kb on - strand, within ABZR87_RS01790 at 381.245 kb on + strand, within ABZR87_RS01790 at 381.246 kb on - strand, within ABZR87_RS01790 at 381.246 kb on - strand, within ABZR87_RS01790 at 381.248 kb on + strand, within ABZR87_RS01790 at 381.248 kb on + strand, within ABZR87_RS01790 at 381.249 kb on - strand, within ABZR87_RS01790 at 381.249 kb on - strand, within ABZR87_RS01790 at 381.249 kb on - strand, within ABZR87_RS01790 at 381.275 kb on - strand, within ABZR87_RS01790 at 381.275 kb on - strand, within ABZR87_RS01790 at 381.335 kb on + strand, within ABZR87_RS01790 at 381.364 kb on + strand, within ABZR87_RS01790 at 381.364 kb on + strand, within ABZR87_RS01790 at 381.365 kb on - strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.431 kb on + strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.432 kb on - strand, within ABZR87_RS01790 at 381.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 378,916 + ABZR87_RS01775 0.54 +0.7 378,917 - ABZR87_RS01775 0.54 +0.3 379,008 - ABZR87_RS01775 0.71 +0.0 379,055 + ABZR87_RS01775 0.79 +0.9 379,091 + ABZR87_RS01775 0.86 -0.1 379,091 + ABZR87_RS01775 0.86 -0.4 379,091 + ABZR87_RS01775 0.86 -0.7 379,092 - ABZR87_RS01775 0.86 -2.1 379,124 + -1.2 379,125 - -0.9 379,125 - -1.9 379,405 + ABZR87_RS01780 0.29 +0.3 379,405 + ABZR87_RS01780 0.29 +0.8 379,821 - -0.6 379,821 - -0.1 379,856 + -2.0 379,857 - -2.7 379,857 - +0.6 379,961 + ABZR87_RS01785 0.14 -2.4 379,962 - ABZR87_RS01785 0.14 -0.1 379,962 - ABZR87_RS01785 0.14 -0.0 379,962 - ABZR87_RS01785 0.14 -1.2 380,054 + ABZR87_RS01785 0.25 -2.1 380,054 + ABZR87_RS01785 0.25 +1.8 380,054 + ABZR87_RS01785 0.25 +0.7 380,055 - ABZR87_RS01785 0.25 -0.7 380,055 - ABZR87_RS01785 0.25 +1.4 380,148 - ABZR87_RS01785 0.36 -2.4 380,165 + ABZR87_RS01785 0.37 -0.2 380,165 + ABZR87_RS01785 0.37 -0.5 380,166 - ABZR87_RS01785 0.38 +0.1 380,166 - ABZR87_RS01785 0.38 -1.0 380,166 - ABZR87_RS01785 0.38 -0.8 380,166 - ABZR87_RS01785 0.38 -0.3 380,316 + ABZR87_RS01785 0.55 -2.1 380,463 + ABZR87_RS01785 0.72 -0.3 380,463 + ABZR87_RS01785 0.72 +0.1 380,464 - ABZR87_RS01785 0.72 -1.5 380,589 - ABZR87_RS01785 0.86 -1.8 380,589 - ABZR87_RS01785 0.86 -2.1 380,742 + +0.3 380,742 + -0.1 380,742 + -0.4 380,743 - +0.6 380,743 - +0.7 380,743 - -1.3 380,743 - -0.4 380,747 + +0.3 380,748 - +0.8 380,748 - +0.2 380,748 - +0.6 380,802 + +1.7 380,802 + +3.2 380,802 + +1.5 380,803 - +1.9 380,803 - +1.5 380,803 - +2.3 380,803 - +0.9 380,921 + ABZR87_RS01790 0.19 -0.2 380,922 - ABZR87_RS01790 0.20 +0.8 380,987 + ABZR87_RS01790 0.28 +5.6 380,987 + ABZR87_RS01790 0.28 +5.9 380,987 + ABZR87_RS01790 0.28 +5.6 380,987 + ABZR87_RS01790 0.28 +4.9 380,987 + ABZR87_RS01790 0.28 +5.6 380,987 + ABZR87_RS01790 0.28 +6.0 380,988 - ABZR87_RS01790 0.28 +5.7 380,988 - ABZR87_RS01790 0.28 +5.7 380,988 - ABZR87_RS01790 0.28 +5.5 381,005 + ABZR87_RS01790 0.30 +6.3 381,005 + ABZR87_RS01790 0.30 +6.3 381,006 - ABZR87_RS01790 0.31 +4.9 381,032 + ABZR87_RS01790 0.34 +5.8 381,032 + ABZR87_RS01790 0.34 +5.7 381,033 - ABZR87_RS01790 0.34 +5.9 381,033 - ABZR87_RS01790 0.34 +5.6 381,033 - ABZR87_RS01790 0.34 +4.9 381,056 + ABZR87_RS01790 0.37 +5.2 381,057 - ABZR87_RS01790 0.37 +5.7 381,170 + ABZR87_RS01790 0.52 +6.0 381,170 + ABZR87_RS01790 0.52 +6.0 381,170 + ABZR87_RS01790 0.52 +5.5 381,170 + ABZR87_RS01790 0.52 +5.7 381,171 - ABZR87_RS01790 0.52 +6.0 381,171 - ABZR87_RS01790 0.52 +6.7 381,171 - ABZR87_RS01790 0.52 +5.5 381,245 + ABZR87_RS01790 0.62 +5.3 381,246 - ABZR87_RS01790 0.62 +6.1 381,246 - ABZR87_RS01790 0.62 +5.6 381,248 + ABZR87_RS01790 0.62 +5.0 381,248 + ABZR87_RS01790 0.62 +5.9 381,249 - ABZR87_RS01790 0.62 +5.1 381,249 - ABZR87_RS01790 0.62 +5.8 381,249 - ABZR87_RS01790 0.62 +5.2 381,275 - ABZR87_RS01790 0.66 +5.5 381,275 - ABZR87_RS01790 0.66 +6.2 381,335 + ABZR87_RS01790 0.74 +5.8 381,364 + ABZR87_RS01790 0.78 +5.9 381,364 + ABZR87_RS01790 0.78 +5.9 381,365 - ABZR87_RS01790 0.78 +5.8 381,431 + ABZR87_RS01790 0.86 +6.0 381,431 + ABZR87_RS01790 0.86 +6.3 381,431 + ABZR87_RS01790 0.86 +6.1 381,431 + ABZR87_RS01790 0.86 +6.0 381,431 + ABZR87_RS01790 0.86 +5.0 381,431 + ABZR87_RS01790 0.86 +6.5 381,431 + ABZR87_RS01790 0.86 +4.9 381,432 - ABZR87_RS01790 0.86 +5.7 381,432 - ABZR87_RS01790 0.86 +5.9 381,432 - ABZR87_RS01790 0.86 +5.5 381,432 - ABZR87_RS01790 0.86 +6.0 381,432 - ABZR87_RS01790 0.86 +5.7 381,558 + +8.1
Or see this region's nucleotide sequence