Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01395 and ABZR87_RS01400 are separated by 74 nucleotides ABZR87_RS01400 and ABZR87_RS01405 are separated by 25 nucleotides ABZR87_RS01405 and ABZR87_RS01410 are separated by 30 nucleotides
ABZR87_RS01395: ABZR87_RS01395 - glutamate-5-semialdehyde dehydrogenase, at 291,784 to 293,064
_RS01395
ABZR87_RS01400: ABZR87_RS01400 - DNA polymerase III subunit delta, at 293,139 to 294,215
_RS01400
ABZR87_RS01405: ABZR87_RS01405 - LPS assembly lipoprotein LptE, at 294,241 to 294,765
_RS01405
ABZR87_RS01410: ABZR87_RS01410 - leucine--tRNA ligase, at 294,796 to 297,429
_RS01410
Position (kb) 293
294
295 Strain fitness (log2 ratio) -1
0
1
2
3 at 292.212 kb on - strand, within ABZR87_RS01395 at 292.212 kb on - strand, within ABZR87_RS01395 at 292.358 kb on + strand, within ABZR87_RS01395 at 292.463 kb on + strand, within ABZR87_RS01395 at 292.463 kb on + strand, within ABZR87_RS01395 at 292.464 kb on - strand, within ABZR87_RS01395 at 292.686 kb on - strand, within ABZR87_RS01395 at 292.686 kb on - strand, within ABZR87_RS01395 at 292.686 kb on - strand, within ABZR87_RS01395 at 292.686 kb on - strand, within ABZR87_RS01395 at 293.039 kb on + strand at 293.040 kb on - strand at 293.040 kb on - strand at 293.040 kb on - strand at 293.040 kb on - strand at 293.040 kb on - strand at 293.040 kb on - strand at 294.243 kb on - strand at 294.292 kb on - strand at 294.312 kb on - strand, within ABZR87_RS01405 at 294.766 kb on - strand at 294.766 kb on - strand at 294.766 kb on - strand at 294.766 kb on - strand at 294.766 kb on - strand at 294.766 kb on - strand at 294.766 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 292,212 - ABZR87_RS01395 0.33 -0.1 292,212 - ABZR87_RS01395 0.33 -0.8 292,358 + ABZR87_RS01395 0.45 +0.8 292,463 + ABZR87_RS01395 0.53 -0.6 292,463 + ABZR87_RS01395 0.53 +0.4 292,464 - ABZR87_RS01395 0.53 +0.1 292,686 - ABZR87_RS01395 0.70 +0.4 292,686 - ABZR87_RS01395 0.70 -0.3 292,686 - ABZR87_RS01395 0.70 +0.9 292,686 - ABZR87_RS01395 0.70 -0.0 293,039 + -0.9 293,040 - +0.2 293,040 - +0.5 293,040 - +0.1 293,040 - -0.1 293,040 - +0.2 293,040 - -0.7 294,243 - +0.2 294,292 - +3.0 294,312 - ABZR87_RS01405 0.14 +3.2 294,766 - +0.2 294,766 - +1.5 294,766 - +1.4 294,766 - +1.4 294,766 - +1.6 294,766 - +2.7 294,766 - +2.1
Or see this region's nucleotide sequence