Experiment: Ra3_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01330 and ABZR87_RS01335 overlap by 4 nucleotides ABZR87_RS01335 and ABZR87_RS01340 are separated by 287 nucleotides
ABZR87_RS01330: ABZR87_RS01330 - tRNA 2-thiouridine(34) synthase MnmA, at 277,665 to 278,777
_RS01330
ABZR87_RS01335: ABZR87_RS01335 - NUDIX hydrolase, at 278,774 to 279,268
_RS01335
ABZR87_RS01340: ABZR87_RS01340 - Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha, at 279,556 to 280,695
_RS01340
Position (kb) 278
279
280 Strain fitness (log2 ratio) -2
-1
0
1 at 278.797 kb on - strand at 278.797 kb on - strand at 278.819 kb on - strand at 278.851 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.007 kb on - strand, within ABZR87_RS01335 at 279.049 kb on - strand, within ABZR87_RS01335 at 279.049 kb on - strand, within ABZR87_RS01335 at 279.049 kb on - strand, within ABZR87_RS01335 at 279.049 kb on - strand, within ABZR87_RS01335 at 279.302 kb on - strand at 279.302 kb on - strand at 279.474 kb on + strand at 279.475 kb on - strand at 279.475 kb on - strand at 279.528 kb on + strand at 279.529 kb on - strand at 279.534 kb on + strand at 279.534 kb on + strand at 279.534 kb on + strand at 279.534 kb on + strand at 279.535 kb on - strand at 279.631 kb on + strand at 279.631 kb on + strand at 279.631 kb on + strand at 279.632 kb on - strand at 279.703 kb on + strand, within ABZR87_RS01340 at 279.703 kb on + strand, within ABZR87_RS01340 at 279.703 kb on + strand, within ABZR87_RS01340 at 279.703 kb on + strand, within ABZR87_RS01340 at 279.967 kb on + strand, within ABZR87_RS01340 at 279.967 kb on + strand, within ABZR87_RS01340 at 279.969 kb on + strand, within ABZR87_RS01340 at 280.243 kb on + strand, within ABZR87_RS01340
Per-strain Table
Position Strand Gene LocusTag Fraction Ra3_1 remove 278,797 - +1.3 278,797 - -0.7 278,819 - -0.0 278,851 - ABZR87_RS01335 0.16 +0.2 279,007 - ABZR87_RS01335 0.47 -1.1 279,007 - ABZR87_RS01335 0.47 -0.6 279,007 - ABZR87_RS01335 0.47 -0.1 279,007 - ABZR87_RS01335 0.47 +0.0 279,007 - ABZR87_RS01335 0.47 +0.3 279,007 - ABZR87_RS01335 0.47 +0.1 279,007 - ABZR87_RS01335 0.47 -0.3 279,049 - ABZR87_RS01335 0.56 -0.9 279,049 - ABZR87_RS01335 0.56 -2.2 279,049 - ABZR87_RS01335 0.56 -0.4 279,049 - ABZR87_RS01335 0.56 -1.2 279,302 - -1.7 279,302 - -0.1 279,474 + +0.9 279,475 - +1.3 279,475 - -0.9 279,528 + -0.9 279,529 - +1.1 279,534 + -0.1 279,534 + +1.6 279,534 + +0.3 279,534 + +0.5 279,535 - -0.0 279,631 + +0.4 279,631 + -0.3 279,631 + +0.7 279,632 - -0.8 279,703 + ABZR87_RS01340 0.13 +0.5 279,703 + ABZR87_RS01340 0.13 -0.3 279,703 + ABZR87_RS01340 0.13 +1.1 279,703 + ABZR87_RS01340 0.13 -0.4 279,967 + ABZR87_RS01340 0.36 +0.2 279,967 + ABZR87_RS01340 0.36 -0.0 279,969 + ABZR87_RS01340 0.36 +0.7 280,243 + ABZR87_RS01340 0.60 +0.3
Or see this region's nucleotide sequence