Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00720

Experiment: Ra3_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00715 and ABZR87_RS00720 are separated by 28 nucleotidesABZR87_RS00720 and ABZR87_RS00725 are separated by 27 nucleotides ABZR87_RS00715: ABZR87_RS00715 - MotA/TolQ/ExbB proton channel family protein, at 145,974 to 146,594 _RS00715 ABZR87_RS00720: ABZR87_RS00720 - biopolymer transporter ExbD, at 146,623 to 147,051 _RS00720 ABZR87_RS00725: ABZR87_RS00725 - tetraacyldisaccharide 4'-kinase, at 147,079 to 148,128 _RS00725 Position (kb) 146 147 148Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 145.700 kb on - strandat 145.710 kb on + strandat 145.710 kb on + strandat 145.710 kb on + strandat 145.710 kb on + strandat 145.710 kb on + strandat 145.711 kb on - strandat 145.711 kb on - strandat 145.711 kb on - strandat 145.868 kb on - strandat 146.103 kb on + strand, within ABZR87_RS00715at 146.103 kb on + strand, within ABZR87_RS00715at 146.432 kb on + strand, within ABZR87_RS00715at 146.448 kb on + strand, within ABZR87_RS00715at 146.448 kb on + strand, within ABZR87_RS00715at 146.502 kb on + strand, within ABZR87_RS00715at 146.502 kb on + strand, within ABZR87_RS00715at 146.526 kb on + strand, within ABZR87_RS00715at 146.526 kb on + strand, within ABZR87_RS00715at 146.526 kb on + strand, within ABZR87_RS00715at 146.526 kb on + strand, within ABZR87_RS00715at 146.526 kb on + strand, within ABZR87_RS00715at 146.526 kb on + strand, within ABZR87_RS00715at 146.526 kb on + strand, within ABZR87_RS00715at 146.526 kb on + strand, within ABZR87_RS00715at 146.526 kb on + strand, within ABZR87_RS00715at 146.559 kb on + strandat 146.559 kb on + strandat 146.559 kb on + strandat 146.559 kb on + strandat 146.559 kb on + strandat 146.559 kb on + strandat 146.610 kb on - strandat 146.728 kb on + strand, within ABZR87_RS00720at 146.728 kb on + strand, within ABZR87_RS00720at 146.728 kb on + strand, within ABZR87_RS00720at 146.728 kb on + strand, within ABZR87_RS00720at 146.728 kb on + strand, within ABZR87_RS00720at 146.728 kb on + strand, within ABZR87_RS00720at 146.737 kb on + strand, within ABZR87_RS00720at 146.737 kb on + strand, within ABZR87_RS00720at 146.833 kb on + strand, within ABZR87_RS00720at 146.833 kb on + strand, within ABZR87_RS00720at 146.833 kb on + strand, within ABZR87_RS00720at 146.833 kb on + strand, within ABZR87_RS00720at 146.834 kb on - strand, within ABZR87_RS00720at 146.834 kb on - strand, within ABZR87_RS00720at 146.834 kb on - strand, within ABZR87_RS00720at 147.049 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_1
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145,700 - -0.2
145,710 + +0.5
145,710 + +1.5
145,710 + +0.1
145,710 + +1.7
145,710 + +1.3
145,711 - +0.2
145,711 - +0.1
145,711 - +0.0
145,868 - +3.1
146,103 + ABZR87_RS00715 0.21 +4.2
146,103 + ABZR87_RS00715 0.21 +3.8
146,432 + ABZR87_RS00715 0.74 +3.9
146,448 + ABZR87_RS00715 0.76 +3.8
146,448 + ABZR87_RS00715 0.76 +4.3
146,502 + ABZR87_RS00715 0.85 +3.0
146,502 + ABZR87_RS00715 0.85 +4.5
146,526 + ABZR87_RS00715 0.89 +4.2
146,526 + ABZR87_RS00715 0.89 +3.4
146,526 + ABZR87_RS00715 0.89 +4.6
146,526 + ABZR87_RS00715 0.89 +4.7
146,526 + ABZR87_RS00715 0.89 +5.0
146,526 + ABZR87_RS00715 0.89 +3.6
146,526 + ABZR87_RS00715 0.89 +4.2
146,526 + ABZR87_RS00715 0.89 +4.6
146,526 + ABZR87_RS00715 0.89 +4.2
146,559 + +4.1
146,559 + +4.1
146,559 + +4.1
146,559 + +3.9
146,559 + +4.4
146,559 + +3.5
146,610 - +0.2
146,728 + ABZR87_RS00720 0.24 +3.6
146,728 + ABZR87_RS00720 0.24 +4.6
146,728 + ABZR87_RS00720 0.24 +4.0
146,728 + ABZR87_RS00720 0.24 +4.1
146,728 + ABZR87_RS00720 0.24 +3.9
146,728 + ABZR87_RS00720 0.24 +3.9
146,737 + ABZR87_RS00720 0.27 +4.2
146,737 + ABZR87_RS00720 0.27 +4.1
146,833 + ABZR87_RS00720 0.49 +4.1
146,833 + ABZR87_RS00720 0.49 +2.5
146,833 + ABZR87_RS00720 0.49 +3.9
146,833 + ABZR87_RS00720 0.49 +4.9
146,834 - ABZR87_RS00720 0.49 +4.3
146,834 - ABZR87_RS00720 0.49 +4.6
146,834 - ABZR87_RS00720 0.49 +3.7
147,049 + -0.6

Or see this region's nucleotide sequence