Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00140

Experiment: Ra3_1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS00135 and ABZR87_RS00140 are separated by 55 nucleotidesABZR87_RS00140 and ABZR87_RS00145 overlap by 4 nucleotidesABZR87_RS00145 and ABZR87_RS00150 are separated by 22 nucleotides ABZR87_RS00135: ABZR87_RS00135 - dihydroxy-acid dehydratase, at 26,837 to 28,510 _RS00135 ABZR87_RS00140: ABZR87_RS00140 - DUF2486 family protein, at 28,566 to 28,991 _RS00140 ABZR87_RS00145: ABZR87_RS00145 - DNA polymerase III subunit chi, at 28,988 to 29,416 _RS00145 ABZR87_RS00150: ABZR87_RS00150 - leucyl aminopeptidase, at 29,439 to 30,947 _RS00150 Position (kb) 28 29Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 27.668 kb on + strand, within ABZR87_RS00135at 27.668 kb on + strand, within ABZR87_RS00135at 27.668 kb on + strand, within ABZR87_RS00135at 27.669 kb on - strand, within ABZR87_RS00135at 27.669 kb on - strand, within ABZR87_RS00135at 27.669 kb on - strand, within ABZR87_RS00135at 27.669 kb on - strand, within ABZR87_RS00135at 27.669 kb on - strand, within ABZR87_RS00135at 27.773 kb on + strand, within ABZR87_RS00135at 27.773 kb on + strand, within ABZR87_RS00135at 27.773 kb on + strand, within ABZR87_RS00135at 27.773 kb on + strand, within ABZR87_RS00135at 27.773 kb on + strand, within ABZR87_RS00135at 27.774 kb on - strand, within ABZR87_RS00135at 27.774 kb on - strand, within ABZR87_RS00135at 27.774 kb on - strand, within ABZR87_RS00135at 27.774 kb on - strand, within ABZR87_RS00135at 27.774 kb on - strand, within ABZR87_RS00135at 27.774 kb on - strand, within ABZR87_RS00135at 27.959 kb on + strand, within ABZR87_RS00135at 27.959 kb on + strand, within ABZR87_RS00135at 27.960 kb on - strand, within ABZR87_RS00135at 28.134 kb on + strand, within ABZR87_RS00135at 28.135 kb on - strand, within ABZR87_RS00135at 28.135 kb on - strand, within ABZR87_RS00135at 28.142 kb on + strand, within ABZR87_RS00135at 28.143 kb on - strand, within ABZR87_RS00135at 28.143 kb on - strand, within ABZR87_RS00135at 28.234 kb on + strand, within ABZR87_RS00135at 28.261 kb on + strand, within ABZR87_RS00135at 28.301 kb on + strand, within ABZR87_RS00135at 28.301 kb on + strand, within ABZR87_RS00135at 28.301 kb on + strand, within ABZR87_RS00135at 28.301 kb on + strand, within ABZR87_RS00135at 28.301 kb on + strand, within ABZR87_RS00135at 28.301 kb on + strand, within ABZR87_RS00135at 28.302 kb on - strand, within ABZR87_RS00135at 28.302 kb on - strand, within ABZR87_RS00135at 28.439 kb on + strandat 28.439 kb on + strandat 28.439 kb on + strandat 28.440 kb on - strandat 28.441 kb on + strandat 28.441 kb on + strandat 28.442 kb on - strandat 28.442 kb on - strandat 28.442 kb on - strandat 28.442 kb on - strandat 28.899 kb on + strand, within ABZR87_RS00140at 28.899 kb on + strand, within ABZR87_RS00140at 28.899 kb on + strand, within ABZR87_RS00140at 28.900 kb on - strand, within ABZR87_RS00140at 28.900 kb on - strand, within ABZR87_RS00140at 28.975 kb on + strandat 29.371 kb on - strand, within ABZR87_RS00145at 29.416 kb on + strandat 29.416 kb on + strandat 29.416 kb on + strandat 29.416 kb on + strandat 29.416 kb on + strandat 29.416 kb on + strandat 29.417 kb on - strandat 29.417 kb on - strandat 29.417 kb on - strandat 29.417 kb on - strandat 29.551 kb on + strandat 29.656 kb on + strand, within ABZR87_RS00150at 29.657 kb on - strand, within ABZR87_RS00150at 29.657 kb on - strand, within ABZR87_RS00150at 29.657 kb on - strand, within ABZR87_RS00150at 29.746 kb on + strand, within ABZR87_RS00150at 29.746 kb on + strand, within ABZR87_RS00150at 29.746 kb on + strand, within ABZR87_RS00150at 29.747 kb on - strand, within ABZR87_RS00150at 29.747 kb on - strand, within ABZR87_RS00150at 29.747 kb on - strand, within ABZR87_RS00150at 29.747 kb on - strand, within ABZR87_RS00150at 29.839 kb on + strand, within ABZR87_RS00150at 29.839 kb on + strand, within ABZR87_RS00150at 29.839 kb on + strand, within ABZR87_RS00150at 29.840 kb on - strand, within ABZR87_RS00150at 29.840 kb on - strand, within ABZR87_RS00150at 29.840 kb on - strand, within ABZR87_RS00150at 29.840 kb on - strand, within ABZR87_RS00150at 29.840 kb on - strand, within ABZR87_RS00150at 29.840 kb on - strand, within ABZR87_RS00150at 29.840 kb on - strand, within ABZR87_RS00150at 29.840 kb on - strand, within ABZR87_RS00150at 29.840 kb on - strand, within ABZR87_RS00150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Ra3_1
remove
27,668 + ABZR87_RS00135 0.50 +0.5
27,668 + ABZR87_RS00135 0.50 +0.3
27,668 + ABZR87_RS00135 0.50 +0.2
27,669 - ABZR87_RS00135 0.50 +0.6
27,669 - ABZR87_RS00135 0.50 +0.3
27,669 - ABZR87_RS00135 0.50 +0.6
27,669 - ABZR87_RS00135 0.50 +0.5
27,669 - ABZR87_RS00135 0.50 +0.1
27,773 + ABZR87_RS00135 0.56 +0.0
27,773 + ABZR87_RS00135 0.56 -0.5
27,773 + ABZR87_RS00135 0.56 -0.9
27,773 + ABZR87_RS00135 0.56 -0.6
27,773 + ABZR87_RS00135 0.56 +0.7
27,774 - ABZR87_RS00135 0.56 -0.5
27,774 - ABZR87_RS00135 0.56 +0.5
27,774 - ABZR87_RS00135 0.56 -1.1
27,774 - ABZR87_RS00135 0.56 -0.4
27,774 - ABZR87_RS00135 0.56 +0.4
27,774 - ABZR87_RS00135 0.56 -0.4
27,959 + ABZR87_RS00135 0.67 -0.2
27,959 + ABZR87_RS00135 0.67 +0.6
27,960 - ABZR87_RS00135 0.67 +0.4
28,134 + ABZR87_RS00135 0.77 +0.0
28,135 - ABZR87_RS00135 0.78 -0.2
28,135 - ABZR87_RS00135 0.78 +0.6
28,142 + ABZR87_RS00135 0.78 +0.1
28,143 - ABZR87_RS00135 0.78 +0.9
28,143 - ABZR87_RS00135 0.78 -0.1
28,234 + ABZR87_RS00135 0.83 +0.4
28,261 + ABZR87_RS00135 0.85 +1.1
28,301 + ABZR87_RS00135 0.87 +0.1
28,301 + ABZR87_RS00135 0.87 -1.2
28,301 + ABZR87_RS00135 0.87 +0.2
28,301 + ABZR87_RS00135 0.87 -0.4
28,301 + ABZR87_RS00135 0.87 -0.6
28,301 + ABZR87_RS00135 0.87 -0.3
28,302 - ABZR87_RS00135 0.88 +0.6
28,302 - ABZR87_RS00135 0.88 +1.1
28,439 + -1.3
28,439 + +0.8
28,439 + +0.1
28,440 - +0.3
28,441 + +1.2
28,441 + +0.8
28,442 - +0.4
28,442 - -0.0
28,442 - -1.1
28,442 - -2.0
28,899 + ABZR87_RS00140 0.78 +3.1
28,899 + ABZR87_RS00140 0.78 +2.1
28,899 + ABZR87_RS00140 0.78 +2.7
28,900 - ABZR87_RS00140 0.78 +4.0
28,900 - ABZR87_RS00140 0.78 +3.3
28,975 + +3.5
29,371 - ABZR87_RS00145 0.89 +0.3
29,416 + +0.8
29,416 + +1.7
29,416 + +0.4
29,416 + +2.9
29,416 + +2.0
29,416 + +2.4
29,417 - -0.9
29,417 - -0.0
29,417 - -0.6
29,417 - -1.5
29,551 + +2.6
29,656 + ABZR87_RS00150 0.14 +1.6
29,657 - ABZR87_RS00150 0.14 +1.5
29,657 - ABZR87_RS00150 0.14 +0.5
29,657 - ABZR87_RS00150 0.14 +1.0
29,746 + ABZR87_RS00150 0.20 +2.6
29,746 + ABZR87_RS00150 0.20 +2.0
29,746 + ABZR87_RS00150 0.20 +1.7
29,747 - ABZR87_RS00150 0.20 +1.2
29,747 - ABZR87_RS00150 0.20 +0.7
29,747 - ABZR87_RS00150 0.20 -0.1
29,747 - ABZR87_RS00150 0.20 +1.2
29,839 + ABZR87_RS00150 0.27 +2.3
29,839 + ABZR87_RS00150 0.27 +2.1
29,839 + ABZR87_RS00150 0.27 +1.7
29,840 - ABZR87_RS00150 0.27 +0.5
29,840 - ABZR87_RS00150 0.27 +0.7
29,840 - ABZR87_RS00150 0.27 +0.0
29,840 - ABZR87_RS00150 0.27 +1.6
29,840 - ABZR87_RS00150 0.27 +1.5
29,840 - ABZR87_RS00150 0.27 +2.3
29,840 - ABZR87_RS00150 0.27 +1.2
29,840 - ABZR87_RS00150 0.27 +0.4
29,840 - ABZR87_RS00150 0.27 +0.4

Or see this region's nucleotide sequence