Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001254

Experiment: RCH2_defined_glucose_5mM with Epiandrosterone 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Epiandrosterone 5 mM
1,398,299	-		ABIE53_001253	0.17	-0.8
1,398,300	+		ABIE53_001253	0.17	+0.4
1,398,300	+		ABIE53_001253	0.17	+2.1
1,398,300	+		ABIE53_001253	0.17	+1.6
1,398,301	-		ABIE53_001253	0.17	-0.4
1,398,439	-		ABIE53_001253	0.32	-0.5
1,398,439	-		ABIE53_001253	0.32	+0.4
1,398,439	-		ABIE53_001253	0.32	-1.6
1,398,517	-		ABIE53_001253	0.40	-1.9
1,398,517	-		ABIE53_001253	0.40	-0.3
1,398,948	+		ABIE53_001253	0.86	-1.5
1,398,948	+		ABIE53_001253	0.86	+1.4
1,398,948	+		ABIE53_001253	0.86	+0.4
1,398,948	+		ABIE53_001253	0.86	-1.9
1,398,948	+		ABIE53_001253	0.86	-0.2
1,398,949	-		ABIE53_001253	0.86	-0.3
1,398,949	-		ABIE53_001253	0.86	+0.2
1,398,949	-		ABIE53_001253	0.86	+0.9
1,399,155	+		ABIE53_001254	0.14	+1.2
1,399,187	+		ABIE53_001254	0.20	-0.1
1,399,187	+		ABIE53_001254	0.20	+0.8
1,399,187	+		ABIE53_001254	0.20	+0.4
1,399,187	+		ABIE53_001254	0.20	-0.5
1,399,187	+		ABIE53_001254	0.20	+0.4
1,399,187	+		ABIE53_001254	0.20	-0.2
1,399,187	+		ABIE53_001254	0.20	+1.7
1,399,187	+		ABIE53_001254	0.20	-0.2
1,399,188	-		ABIE53_001254	0.20	+0.3
1,399,188	-		ABIE53_001254	0.20	-0.4
1,399,188	-		ABIE53_001254	0.20	-0.6
1,399,188	-		ABIE53_001254	0.20	+0.7
1,399,188	-		ABIE53_001254	0.20	+0.2
1,399,188	-		ABIE53_001254	0.20	+0.0
1,399,188	-		ABIE53_001254	0.20	-0.9
1,399,188	-		ABIE53_001254	0.20	+0.0
1,399,188	-		ABIE53_001254	0.20	+1.1
1,399,188	-		ABIE53_001254	0.20	+1.6
1,399,189	+		ABIE53_001254	0.20	-0.3
1,399,189	+		ABIE53_001254	0.20	+0.6
1,399,342	+		ABIE53_001254	0.48	-0.4
1,399,342	+		ABIE53_001254	0.48	+0.3
1,399,342	+		ABIE53_001254	0.48	-1.0
1,399,342	+		ABIE53_001254	0.48	+0.0
1,399,342	+		ABIE53_001254	0.48	-0.6
1,399,342	+		ABIE53_001254	0.48	+0.3
1,399,342	+		ABIE53_001254	0.48	+0.7
1,399,342	+		ABIE53_001254	0.48	+1.6
1,399,342	+		ABIE53_001254	0.48	-1.2
1,399,342	+		ABIE53_001254	0.48	+0.0
1,399,342	+		ABIE53_001254	0.48	+0.8
1,399,343	-		ABIE53_001254	0.48	-0.7
1,399,343	-		ABIE53_001254	0.48	+0.3
1,399,343	-		ABIE53_001254	0.48	+0.0
1,399,343	-		ABIE53_001254	0.48	+1.6
1,399,343	-		ABIE53_001254	0.48	+0.1
1,399,343	-		ABIE53_001254	0.48	+1.3
1,399,343	-		ABIE53_001254	0.48	-0.9
1,399,343	-		ABIE53_001254	0.48	-0.7
1,399,343	-		ABIE53_001254	0.48	+2.8
1,399,532	+		ABIE53_001254	0.82	-1.6
1,399,532	+		ABIE53_001254	0.82	-0.3
1,399,532	+		ABIE53_001254	0.82	+1.2
1,399,532	+		ABIE53_001254	0.82	-0.4
1,399,532	+		ABIE53_001254	0.82	+0.6
1,399,532	+		ABIE53_001254	0.82	-1.4
1,399,532	+		ABIE53_001254	0.82	-0.2
1,399,533	-		ABIE53_001254	0.82	-2.2
1,399,533	-		ABIE53_001254	0.82	-0.1
1,399,533	-		ABIE53_001254	0.82	+0.2
1,399,533	-		ABIE53_001254	0.82	-0.3
1,399,643	+				-1.0
1,399,643	+				-0.3
1,399,676	+				+0.8
1,399,676	+				-0.3
1,399,676	+				+1.2
1,399,676	+				+0.6
1,399,676	+				+0.6
1,399,677	-				+1.3
1,400,057	-		ABIE53_001255	0.25	-1.1
1,400,065	+		ABIE53_001255	0.25	-0.6
1,400,065	+		ABIE53_001255	0.25	+0.3
1,400,065	+		ABIE53_001255	0.25	+0.6
1,400,065	+		ABIE53_001255	0.25	+0.8
1,400,065	+		ABIE53_001255	0.25	+0.3
1,400,065	+		ABIE53_001255	0.25	-0.3
1,400,065	+		ABIE53_001255	0.25	-1.0
1,400,065	+		ABIE53_001255	0.25	+0.0
1,400,066	-		ABIE53_001255	0.25	-0.8
1,400,066	-		ABIE53_001255	0.25	+0.8
1,400,066	-		ABIE53_001255	0.25	+1.6
1,400,066	-		ABIE53_001255	0.25	-1.0
1,400,101	+		ABIE53_001255	0.27	-1.4
1,400,101	+		ABIE53_001255	0.27	-0.3
1,400,101	+		ABIE53_001255	0.27	-0.9
1,400,101	+		ABIE53_001255	0.27	+0.3
1,400,101	+		ABIE53_001255	0.27	+1.6
1,400,101	+		ABIE53_001255	0.27	-1.6
1,400,102	-		ABIE53_001255	0.27	+0.3
1,400,102	-		ABIE53_001255	0.27	+2.3
1,400,122	+		ABIE53_001255	0.29	+0.3
1,400,122	+		ABIE53_001255	0.29	-0.4
1,400,122	+		ABIE53_001255	0.29	+0.4
1,400,123	-		ABIE53_001255	0.29	-2.1
1,400,422	+		ABIE53_001255	0.48	+1.0
1,400,423	-		ABIE53_001255	0.48	-0.9
1,400,535	+		ABIE53_001255	0.55	-1.6
1,400,535	+		ABIE53_001255	0.55	+2.0
1,400,593	+		ABIE53_001255	0.59	+0.6
1,400,593	+		ABIE53_001255	0.59	+0.3
1,400,593	+		ABIE53_001255	0.59	+0.0
1,400,594	-		ABIE53_001255	0.59	-0.3
1,400,594	-		ABIE53_001255	0.59	+0.0
1,400,594	-		ABIE53_001255	0.59	+1.6
1,400,594	-		ABIE53_001255	0.59	-0.2
1,400,594	-		ABIE53_001255	0.59	+0.2