Experiment: MoYLS4 with Polyethylene glycol 5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0197 and DVU0198 overlap by 17 nucleotides DVU0198 and DVU0199 are separated by 9 nucleotides DVU0199 and DVU0200 are separated by 11 nucleotides
DVU0197: DVU0197 - phage portal protein, lambda family (TIGR), at 242,590 to 244,290
DVU0197
DVU0198: DVU0198 - minor capsid protein C, degenerate (TIGR), at 244,274 to 245,593
DVU0198
DVU0199: DVU0199 - conserved hypothetical protein (TIGR), at 245,603 to 245,986
DVU0199
DVU0200: DVU0200 - major head protein (TIGR), at 245,998 to 247,002
DVU0200
Position (kb) 244
245
246 Strain fitness (log2 ratio) -1
0
1
2 at 243.396 kb on + strand, within DVU0197 at 243.399 kb on - strand, within DVU0197 at 243.399 kb on - strand, within DVU0197 at 243.407 kb on + strand, within DVU0197 at 243.931 kb on - strand, within DVU0197 at 243.962 kb on - strand, within DVU0197 at 244.162 kb on + strand at 244.225 kb on - strand at 244.264 kb on - strand at 244.349 kb on + strand at 244.349 kb on + strand at 244.485 kb on - strand, within DVU0198 at 244.568 kb on + strand, within DVU0198 at 244.885 kb on + strand, within DVU0198 at 245.056 kb on + strand, within DVU0198 at 245.056 kb on + strand, within DVU0198 at 245.086 kb on - strand, within DVU0198 at 246.527 kb on - strand, within DVU0200
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polyethylene glycol 5% remove 243,396 + DVU0197 0.47 +0.2 243,399 - DVU0197 0.48 -0.0 243,399 - DVU0197 0.48 +0.2 243,407 + DVU0197 0.48 +0.1 243,931 - DVU0197 0.79 -0.7 243,962 - DVU0197 0.81 -0.1 244,162 + -0.4 244,225 - -0.1 244,264 - -0.7 244,349 + +2.2 244,349 + +0.2 244,485 - DVU0198 0.16 -0.4 244,568 + DVU0198 0.22 -0.7 244,885 + DVU0198 0.46 -1.4 245,056 + DVU0198 0.59 -0.7 245,056 + DVU0198 0.59 -0.4 245,086 - DVU0198 0.62 -0.1 246,527 - DVU0200 0.53 -0.4
Or see this region's nucleotide sequence