Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0079

Experiment: MoYLS4 with Polyethylene glycol 5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0077 and DVU0078 are separated by 46 nucleotidesDVU0078 and gufA are separated by 372 nucleotidesgufA and fumC are separated by 37 nucleotides DVU0077: DVU0077 - conserved hypothetical protein (TIGR), at 94,316 to 95,398 DVU0077 DVU0078: DVU0078 - conserved hypothetical protein (TIGR), at 95,445 to 95,786 DVU0078 DVU0079: gufA - ZIP zinc transporter family protein (TIGR), at 96,159 to 96,962 gufA DVU0080: fumC - fumarate hydratase, class II (TIGR), at 97,000 to 98,406 fumC Position (kb) 96 97Strain fitness (log2 ratio) -2 -1 0 1 2 3at 95.269 kb on + strand, within DVU0077at 95.282 kb on - strand, within DVU0077at 95.309 kb on - strandat 95.311 kb on + strandat 95.311 kb on + strandat 95.318 kb on + strandat 95.319 kb on - strandat 95.319 kb on - strandat 95.319 kb on - strandat 95.319 kb on - strandat 95.361 kb on - strandat 95.388 kb on - strandat 95.417 kb on - strandat 95.441 kb on - strandat 95.449 kb on - strandat 95.481 kb on + strand, within DVU0078at 95.549 kb on - strand, within DVU0078at 95.563 kb on + strand, within DVU0078at 95.571 kb on - strand, within DVU0078at 95.571 kb on - strand, within DVU0078at 95.590 kb on + strand, within DVU0078at 95.666 kb on - strand, within DVU0078at 95.695 kb on - strand, within DVU0078at 95.727 kb on + strand, within DVU0078at 95.729 kb on - strand, within DVU0078at 95.735 kb on - strand, within DVU0078at 95.750 kb on + strand, within DVU0078at 95.779 kb on + strandat 95.786 kb on + strandat 95.786 kb on + strandat 95.787 kb on - strandat 95.794 kb on - strandat 95.794 kb on - strandat 95.794 kb on - strandat 95.794 kb on - strandat 95.810 kb on - strandat 95.829 kb on + strandat 95.847 kb on - strandat 95.866 kb on - strandat 95.872 kb on - strandat 95.904 kb on + strandat 95.918 kb on - strandat 95.974 kb on + strandat 95.976 kb on - strandat 96.004 kb on + strandat 96.004 kb on + strandat 96.035 kb on - strandat 96.076 kb on + strandat 96.081 kb on + strandat 96.089 kb on - strandat 96.092 kb on + strandat 96.092 kb on + strandat 96.100 kb on - strandat 96.102 kb on + strandat 96.102 kb on + strandat 96.102 kb on + strandat 96.102 kb on + strandat 96.102 kb on + strandat 96.102 kb on + strandat 96.102 kb on + strandat 96.102 kb on + strandat 96.102 kb on + strandat 96.110 kb on - strandat 96.110 kb on - strandat 96.110 kb on - strandat 96.110 kb on - strandat 96.202 kb on + strandat 96.221 kb on + strandat 96.221 kb on + strandat 96.221 kb on + strandat 96.221 kb on + strandat 96.229 kb on - strandat 96.229 kb on - strandat 96.231 kb on + strandat 96.243 kb on + strand, within gufAat 96.251 kb on - strand, within gufAat 96.251 kb on - strand, within gufAat 96.291 kb on + strand, within gufAat 96.354 kb on - strand, within gufAat 96.371 kb on + strand, within gufAat 96.399 kb on - strand, within gufAat 96.464 kb on - strand, within gufAat 96.549 kb on + strand, within gufAat 96.599 kb on + strand, within gufAat 96.611 kb on + strand, within gufAat 96.611 kb on + strand, within gufAat 96.638 kb on + strand, within gufAat 96.638 kb on + strand, within gufAat 96.646 kb on - strand, within gufAat 96.656 kb on - strand, within gufAat 96.679 kb on + strand, within gufAat 96.703 kb on - strand, within gufAat 96.747 kb on + strand, within gufAat 96.787 kb on + strand, within gufAat 96.806 kb on + strand, within gufAat 96.807 kb on + strand, within gufAat 96.821 kb on - strand, within gufAat 96.858 kb on - strand, within gufAat 96.886 kb on - strandat 96.912 kb on - strandat 96.966 kb on - strandat 97.053 kb on - strandat 97.073 kb on - strandat 97.145 kb on + strand, within fumCat 97.155 kb on + strand, within fumCat 97.155 kb on + strand, within fumCat 97.163 kb on - strand, within fumCat 97.163 kb on - strand, within fumCat 97.184 kb on - strand, within fumCat 97.280 kb on + strand, within fumCat 97.303 kb on + strand, within fumCat 97.335 kb on + strand, within fumCat 97.362 kb on - strand, within fumCat 97.364 kb on - strand, within fumCat 97.364 kb on - strand, within fumCat 97.364 kb on - strand, within fumCat 97.392 kb on + strand, within fumCat 97.478 kb on + strand, within fumCat 97.478 kb on + strand, within fumCat 97.543 kb on + strand, within fumCat 97.586 kb on + strand, within fumCat 97.671 kb on - strand, within fumCat 97.702 kb on - strand, within fumCat 97.720 kb on + strand, within fumCat 97.759 kb on + strand, within fumCat 97.788 kb on + strand, within fumCat 97.824 kb on - strand, within fumCat 97.828 kb on - strand, within fumCat 97.838 kb on + strand, within fumCat 97.935 kb on - strand, within fumC

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polyethylene glycol 5%
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95,269 + DVU0077 0.88 -0.1
95,282 - DVU0077 0.89 -0.2
95,309 - +0.5
95,311 + +3.2
95,311 + +0.3
95,318 + +1.8
95,319 - +0.9
95,319 - -0.2
95,319 - +0.0
95,319 - -0.6
95,361 - +0.4
95,388 - +0.2
95,417 - -0.3
95,441 - -0.1
95,449 - -0.1
95,481 + DVU0078 0.11 +0.5
95,549 - DVU0078 0.30 -0.4
95,563 + DVU0078 0.35 -0.3
95,571 - DVU0078 0.37 +0.9
95,571 - DVU0078 0.37 +0.4
95,590 + DVU0078 0.42 +2.8
95,666 - DVU0078 0.65 -0.5
95,695 - DVU0078 0.73 +2.2
95,727 + DVU0078 0.82 -0.6
95,729 - DVU0078 0.83 -1.6
95,735 - DVU0078 0.85 +1.2
95,750 + DVU0078 0.89 -0.3
95,779 + -0.3
95,786 + +1.2
95,786 + +0.6
95,787 - -1.1
95,794 - +0.0
95,794 - -0.2
95,794 - +0.7
95,794 - -1.0
95,810 - -0.1
95,829 + +0.1
95,847 - +0.2
95,866 - +1.6
95,872 - +0.4
95,904 + +0.6
95,918 - -0.6
95,974 + +1.1
95,976 - +0.6
96,004 + +1.2
96,004 + -0.3
96,035 - -0.9
96,076 + -0.7
96,081 + -0.1
96,089 - +0.6
96,092 + -0.2
96,092 + -1.1
96,100 - +0.2
96,102 + -0.4
96,102 + +1.5
96,102 + -0.5
96,102 + +0.3
96,102 + -2.5
96,102 + -2.2
96,102 + +0.5
96,102 + -0.6
96,102 + -0.2
96,110 - -0.5
96,110 - +0.2
96,110 - +1.1
96,110 - -0.2
96,202 + -0.4
96,221 + +0.6
96,221 + +0.4
96,221 + -0.6
96,221 + -0.1
96,229 - +0.0
96,229 - -0.2
96,231 + -0.8
96,243 + gufA DVU0079 0.10 +1.5
96,251 - gufA DVU0079 0.11 -0.7
96,251 - gufA DVU0079 0.11 -0.2
96,291 + gufA DVU0079 0.16 -0.1
96,354 - gufA DVU0079 0.24 +0.6
96,371 + gufA DVU0079 0.26 -0.7
96,399 - gufA DVU0079 0.30 -0.4
96,464 - gufA DVU0079 0.38 +1.0
96,549 + gufA DVU0079 0.49 -0.6
96,599 + gufA DVU0079 0.55 -0.3
96,611 + gufA DVU0079 0.56 +0.7
96,611 + gufA DVU0079 0.56 +1.2
96,638 + gufA DVU0079 0.60 +0.5
96,638 + gufA DVU0079 0.60 +0.9
96,646 - gufA DVU0079 0.61 +0.2
96,656 - gufA DVU0079 0.62 -0.1
96,679 + gufA DVU0079 0.65 +1.3
96,703 - gufA DVU0079 0.68 +0.2
96,747 + gufA DVU0079 0.73 -0.3
96,787 + gufA DVU0079 0.78 -0.2
96,806 + gufA DVU0079 0.80 +0.2
96,807 + gufA DVU0079 0.81 -0.1
96,821 - gufA DVU0079 0.82 +0.4
96,858 - gufA DVU0079 0.87 -1.4
96,886 - -0.0
96,912 - -1.7
96,966 - +2.2
97,053 - -0.3
97,073 - -0.5
97,145 + fumC DVU0080 0.10 +0.0
97,155 + fumC DVU0080 0.11 -0.6
97,155 + fumC DVU0080 0.11 -0.7
97,163 - fumC DVU0080 0.12 +0.9
97,163 - fumC DVU0080 0.12 -0.1
97,184 - fumC DVU0080 0.13 -0.4
97,280 + fumC DVU0080 0.20 -0.4
97,303 + fumC DVU0080 0.22 -0.9
97,335 + fumC DVU0080 0.24 -0.6
97,362 - fumC DVU0080 0.26 -1.0
97,364 - fumC DVU0080 0.26 -0.4
97,364 - fumC DVU0080 0.26 +0.2
97,364 - fumC DVU0080 0.26 -0.2
97,392 + fumC DVU0080 0.28 -0.8
97,478 + fumC DVU0080 0.34 +0.1
97,478 + fumC DVU0080 0.34 +0.2
97,543 + fumC DVU0080 0.39 -0.3
97,586 + fumC DVU0080 0.42 -0.5
97,671 - fumC DVU0080 0.48 +0.5
97,702 - fumC DVU0080 0.50 +0.0
97,720 + fumC DVU0080 0.51 +0.3
97,759 + fumC DVU0080 0.54 -0.9
97,788 + fumC DVU0080 0.56 -0.2
97,824 - fumC DVU0080 0.59 -0.0
97,828 - fumC DVU0080 0.59 -0.3
97,838 + fumC DVU0080 0.60 -1.0
97,935 - fumC DVU0080 0.66 -0.5

Or see this region's nucleotide sequence