Experiment: MoYLS4 with Polyethylene glycol 5%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU0077 and DVU0078 are separated by 46 nucleotides DVU0078 and gufA are separated by 372 nucleotides gufA and fumC are separated by 37 nucleotides
DVU0077: DVU0077 - conserved hypothetical protein (TIGR), at 94,316 to 95,398
DVU0077
DVU0078: DVU0078 - conserved hypothetical protein (TIGR), at 95,445 to 95,786
DVU0078
DVU0079: gufA - ZIP zinc transporter family protein (TIGR), at 96,159 to 96,962
gufA
DVU0080: fumC - fumarate hydratase, class II (TIGR), at 97,000 to 98,406
fumC
Position (kb)
96
97 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 95.269 kb on + strand, within DVU0077 at 95.282 kb on - strand, within DVU0077 at 95.309 kb on - strand at 95.311 kb on + strand at 95.311 kb on + strand at 95.318 kb on + strand at 95.319 kb on - strand at 95.319 kb on - strand at 95.319 kb on - strand at 95.319 kb on - strand at 95.361 kb on - strand at 95.388 kb on - strand at 95.417 kb on - strand at 95.441 kb on - strand at 95.449 kb on - strand at 95.481 kb on + strand, within DVU0078 at 95.549 kb on - strand, within DVU0078 at 95.563 kb on + strand, within DVU0078 at 95.571 kb on - strand, within DVU0078 at 95.571 kb on - strand, within DVU0078 at 95.590 kb on + strand, within DVU0078 at 95.666 kb on - strand, within DVU0078 at 95.695 kb on - strand, within DVU0078 at 95.727 kb on + strand, within DVU0078 at 95.729 kb on - strand, within DVU0078 at 95.735 kb on - strand, within DVU0078 at 95.750 kb on + strand, within DVU0078 at 95.779 kb on + strand at 95.786 kb on + strand at 95.786 kb on + strand at 95.787 kb on - strand at 95.794 kb on - strand at 95.794 kb on - strand at 95.794 kb on - strand at 95.794 kb on - strand at 95.810 kb on - strand at 95.829 kb on + strand at 95.847 kb on - strand at 95.866 kb on - strand at 95.872 kb on - strand at 95.904 kb on + strand at 95.918 kb on - strand at 95.974 kb on + strand at 95.976 kb on - strand at 96.004 kb on + strand at 96.004 kb on + strand at 96.035 kb on - strand at 96.076 kb on + strand at 96.081 kb on + strand at 96.089 kb on - strand at 96.092 kb on + strand at 96.092 kb on + strand at 96.100 kb on - strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.102 kb on + strand at 96.110 kb on - strand at 96.110 kb on - strand at 96.110 kb on - strand at 96.110 kb on - strand at 96.202 kb on + strand at 96.221 kb on + strand at 96.221 kb on + strand at 96.221 kb on + strand at 96.221 kb on + strand at 96.229 kb on - strand at 96.229 kb on - strand at 96.231 kb on + strand at 96.243 kb on + strand, within gufA at 96.251 kb on - strand, within gufA at 96.251 kb on - strand, within gufA at 96.291 kb on + strand, within gufA at 96.354 kb on - strand, within gufA at 96.371 kb on + strand, within gufA at 96.399 kb on - strand, within gufA at 96.464 kb on - strand, within gufA at 96.549 kb on + strand, within gufA at 96.599 kb on + strand, within gufA at 96.611 kb on + strand, within gufA at 96.611 kb on + strand, within gufA at 96.638 kb on + strand, within gufA at 96.638 kb on + strand, within gufA at 96.646 kb on - strand, within gufA at 96.656 kb on - strand, within gufA at 96.679 kb on + strand, within gufA at 96.703 kb on - strand, within gufA at 96.747 kb on + strand, within gufA at 96.787 kb on + strand, within gufA at 96.806 kb on + strand, within gufA at 96.807 kb on + strand, within gufA at 96.821 kb on - strand, within gufA at 96.858 kb on - strand, within gufA at 96.886 kb on - strand at 96.912 kb on - strand at 96.966 kb on - strand at 97.053 kb on - strand at 97.073 kb on - strand at 97.145 kb on + strand, within fumC at 97.155 kb on + strand, within fumC at 97.155 kb on + strand, within fumC at 97.163 kb on - strand, within fumC at 97.163 kb on - strand, within fumC at 97.184 kb on - strand, within fumC at 97.280 kb on + strand, within fumC at 97.303 kb on + strand, within fumC at 97.335 kb on + strand, within fumC at 97.362 kb on - strand, within fumC at 97.364 kb on - strand, within fumC at 97.364 kb on - strand, within fumC at 97.364 kb on - strand, within fumC at 97.392 kb on + strand, within fumC at 97.478 kb on + strand, within fumC at 97.478 kb on + strand, within fumC at 97.543 kb on + strand, within fumC at 97.586 kb on + strand, within fumC at 97.671 kb on - strand, within fumC at 97.702 kb on - strand, within fumC at 97.720 kb on + strand, within fumC at 97.759 kb on + strand, within fumC at 97.788 kb on + strand, within fumC at 97.824 kb on - strand, within fumC at 97.828 kb on - strand, within fumC at 97.838 kb on + strand, within fumC at 97.935 kb on - strand, within fumC
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polyethylene glycol 5% remove 95,269 + DVU0077 0.88 -0.1 95,282 - DVU0077 0.89 -0.2 95,309 - +0.5 95,311 + +3.2 95,311 + +0.3 95,318 + +1.8 95,319 - +0.9 95,319 - -0.2 95,319 - +0.0 95,319 - -0.6 95,361 - +0.4 95,388 - +0.2 95,417 - -0.3 95,441 - -0.1 95,449 - -0.1 95,481 + DVU0078 0.11 +0.5 95,549 - DVU0078 0.30 -0.4 95,563 + DVU0078 0.35 -0.3 95,571 - DVU0078 0.37 +0.9 95,571 - DVU0078 0.37 +0.4 95,590 + DVU0078 0.42 +2.8 95,666 - DVU0078 0.65 -0.5 95,695 - DVU0078 0.73 +2.2 95,727 + DVU0078 0.82 -0.6 95,729 - DVU0078 0.83 -1.6 95,735 - DVU0078 0.85 +1.2 95,750 + DVU0078 0.89 -0.3 95,779 + -0.3 95,786 + +1.2 95,786 + +0.6 95,787 - -1.1 95,794 - +0.0 95,794 - -0.2 95,794 - +0.7 95,794 - -1.0 95,810 - -0.1 95,829 + +0.1 95,847 - +0.2 95,866 - +1.6 95,872 - +0.4 95,904 + +0.6 95,918 - -0.6 95,974 + +1.1 95,976 - +0.6 96,004 + +1.2 96,004 + -0.3 96,035 - -0.9 96,076 + -0.7 96,081 + -0.1 96,089 - +0.6 96,092 + -0.2 96,092 + -1.1 96,100 - +0.2 96,102 + -0.4 96,102 + +1.5 96,102 + -0.5 96,102 + +0.3 96,102 + -2.5 96,102 + -2.2 96,102 + +0.5 96,102 + -0.6 96,102 + -0.2 96,110 - -0.5 96,110 - +0.2 96,110 - +1.1 96,110 - -0.2 96,202 + -0.4 96,221 + +0.6 96,221 + +0.4 96,221 + -0.6 96,221 + -0.1 96,229 - +0.0 96,229 - -0.2 96,231 + -0.8 96,243 + gufA DVU0079 0.10 +1.5 96,251 - gufA DVU0079 0.11 -0.7 96,251 - gufA DVU0079 0.11 -0.2 96,291 + gufA DVU0079 0.16 -0.1 96,354 - gufA DVU0079 0.24 +0.6 96,371 + gufA DVU0079 0.26 -0.7 96,399 - gufA DVU0079 0.30 -0.4 96,464 - gufA DVU0079 0.38 +1.0 96,549 + gufA DVU0079 0.49 -0.6 96,599 + gufA DVU0079 0.55 -0.3 96,611 + gufA DVU0079 0.56 +0.7 96,611 + gufA DVU0079 0.56 +1.2 96,638 + gufA DVU0079 0.60 +0.5 96,638 + gufA DVU0079 0.60 +0.9 96,646 - gufA DVU0079 0.61 +0.2 96,656 - gufA DVU0079 0.62 -0.1 96,679 + gufA DVU0079 0.65 +1.3 96,703 - gufA DVU0079 0.68 +0.2 96,747 + gufA DVU0079 0.73 -0.3 96,787 + gufA DVU0079 0.78 -0.2 96,806 + gufA DVU0079 0.80 +0.2 96,807 + gufA DVU0079 0.81 -0.1 96,821 - gufA DVU0079 0.82 +0.4 96,858 - gufA DVU0079 0.87 -1.4 96,886 - -0.0 96,912 - -1.7 96,966 - +2.2 97,053 - -0.3 97,073 - -0.5 97,145 + fumC DVU0080 0.10 +0.0 97,155 + fumC DVU0080 0.11 -0.6 97,155 + fumC DVU0080 0.11 -0.7 97,163 - fumC DVU0080 0.12 +0.9 97,163 - fumC DVU0080 0.12 -0.1 97,184 - fumC DVU0080 0.13 -0.4 97,280 + fumC DVU0080 0.20 -0.4 97,303 + fumC DVU0080 0.22 -0.9 97,335 + fumC DVU0080 0.24 -0.6 97,362 - fumC DVU0080 0.26 -1.0 97,364 - fumC DVU0080 0.26 -0.4 97,364 - fumC DVU0080 0.26 +0.2 97,364 - fumC DVU0080 0.26 -0.2 97,392 + fumC DVU0080 0.28 -0.8 97,478 + fumC DVU0080 0.34 +0.1 97,478 + fumC DVU0080 0.34 +0.2 97,543 + fumC DVU0080 0.39 -0.3 97,586 + fumC DVU0080 0.42 -0.5 97,671 - fumC DVU0080 0.48 +0.5 97,702 - fumC DVU0080 0.50 +0.0 97,720 + fumC DVU0080 0.51 +0.3 97,759 + fumC DVU0080 0.54 -0.9 97,788 + fumC DVU0080 0.56 -0.2 97,824 - fumC DVU0080 0.59 -0.0 97,828 - fumC DVU0080 0.59 -0.3 97,838 + fumC DVU0080 0.60 -1.0 97,935 - fumC DVU0080 0.66 -0.5
Or see this region's nucleotide sequence