Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2001

Experiment: MoYLS4 with Polyethylene glycol 5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2000 and DVU2001 are separated by 34 nucleotidesDVU2001 and DORF14945 are separated by 621 nucleotidesDORF14945 and DVU2003 are separated by 121 nucleotides DVU2000: DVU2000 - hypothetical protein (TIGR), at 2,082,654 to 2,082,743 DVU2000 DVU2001: DVU2001 - site-specific recombinase, phage integrase family, authentic frameshift (TIGR), at 2,082,778 to 2,084,039 DVU2001 DORF14945: DORF14945 - no description, at 2,084,661 to 2,084,855 DORF14945 DVU2003: DVU2003 - transposase, IS5 family, truncation (TIGR), at 2,084,977 to 2,086,239 DVU2003 Position (kb) 2082 2083 2084 2085Strain fitness (log2 ratio) -2 -1 0 1at 2081.894 kb on + strandat 2081.903 kb on - strandat 2081.916 kb on + strandat 2081.972 kb on + strandat 2081.980 kb on - strandat 2081.980 kb on - strandat 2081.985 kb on + strandat 2082.021 kb on + strandat 2082.151 kb on - strandat 2082.151 kb on - strandat 2082.198 kb on + strandat 2082.256 kb on - strandat 2082.329 kb on + strandat 2082.443 kb on - strandat 2082.561 kb on + strandat 2082.834 kb on + strandat 2083.030 kb on - strand, within DVU2001at 2083.058 kb on + strand, within DVU2001at 2083.066 kb on - strand, within DVU2001at 2083.209 kb on + strand, within DVU2001at 2083.209 kb on + strand, within DVU2001at 2083.217 kb on - strand, within DVU2001at 2083.270 kb on + strand, within DVU2001at 2083.273 kb on - strand, within DVU2001at 2083.303 kb on - strand, within DVU2001at 2083.391 kb on + strand, within DVU2001at 2083.439 kb on - strand, within DVU2001at 2083.490 kb on - strand, within DVU2001at 2083.625 kb on - strand, within DVU2001at 2083.641 kb on + strand, within DVU2001at 2083.783 kb on - strand, within DVU2001at 2083.916 kb on + strandat 2083.916 kb on + strandat 2083.961 kb on + strandat 2084.357 kb on - strandat 2084.376 kb on + strandat 2084.545 kb on + strandat 2084.692 kb on - strand, within DORF14945at 2084.692 kb on - strand, within DORF14945at 2084.846 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polyethylene glycol 5%
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2,081,894 + +0.0
2,081,903 - -0.7
2,081,916 + -0.5
2,081,972 + +0.1
2,081,980 - -0.5
2,081,980 - -0.4
2,081,985 + -1.1
2,082,021 + -0.3
2,082,151 - -1.8
2,082,151 - -0.0
2,082,198 + -1.4
2,082,256 - +0.5
2,082,329 + -0.2
2,082,443 - -0.4
2,082,561 + -0.3
2,082,834 + -1.0
2,083,030 - DVU2001 0.20 +0.8
2,083,058 + DVU2001 0.22 +0.2
2,083,066 - DVU2001 0.23 +1.4
2,083,209 + DVU2001 0.34 -0.7
2,083,209 + DVU2001 0.34 -0.7
2,083,217 - DVU2001 0.35 -0.1
2,083,270 + DVU2001 0.39 -0.1
2,083,273 - DVU2001 0.39 +0.1
2,083,303 - DVU2001 0.42 -0.1
2,083,391 + DVU2001 0.49 +0.5
2,083,439 - DVU2001 0.52 -0.2
2,083,490 - DVU2001 0.56 -0.5
2,083,625 - DVU2001 0.67 -0.2
2,083,641 + DVU2001 0.68 -0.6
2,083,783 - DVU2001 0.80 -0.1
2,083,916 + +0.1
2,083,916 + +0.8
2,083,961 + +0.2
2,084,357 - -1.8
2,084,376 + -0.5
2,084,545 + +0.1
2,084,692 - DORF14945 0.16 -1.1
2,084,692 - DORF14945 0.16 -0.8
2,084,846 - -0.2

Or see this region's nucleotide sequence