Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1432

Experiment: MoYLS4 with Polyethylene glycol 5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1431 and DVU1432 are separated by 226 nucleotidesDVU1432 and DVU1434 are separated by 235 nucleotidesDVU1434 and DVU1435 are separated by 62 nucleotides DVU1431: DVU1431 - hpt domain protein/STAS domain protein (TIGR), at 1,508,049 to 1,510,244 DVU1431 DVU1432: DVU1432 - radical SAM domain protein (TIGR), at 1,510,471 to 1,513,065 DVU1432 DVU1434: DVU1434 - hypothetical protein (TIGR), at 1,513,301 to 1,513,666 DVU1434 DVU1435: DVU1435 - membrane protein, putative (TIGR), at 1,513,729 to 1,514,913 DVU1435 Position (kb) 1510 1511 1512 1513 1514Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1509.494 kb on - strand, within DVU1431at 1509.494 kb on - strand, within DVU1431at 1509.564 kb on - strand, within DVU1431at 1509.750 kb on - strand, within DVU1431at 1509.913 kb on + strand, within DVU1431at 1509.923 kb on + strand, within DVU1431at 1509.946 kb on + strand, within DVU1431at 1510.013 kb on - strand, within DVU1431at 1510.112 kb on + strandat 1510.115 kb on - strandat 1510.120 kb on - strandat 1510.128 kb on + strandat 1510.154 kb on - strandat 1510.232 kb on - strandat 1510.238 kb on + strandat 1510.238 kb on + strandat 1510.246 kb on - strandat 1510.246 kb on - strandat 1510.246 kb on - strandat 1510.298 kb on + strandat 1510.306 kb on - strandat 1510.306 kb on - strandat 1510.306 kb on - strandat 1510.306 kb on - strandat 1510.331 kb on + strandat 1510.344 kb on + strandat 1510.344 kb on + strandat 1510.346 kb on + strandat 1510.352 kb on - strandat 1510.625 kb on + strandat 1510.633 kb on - strandat 1510.637 kb on + strandat 1510.831 kb on - strand, within DVU1432at 1510.862 kb on - strand, within DVU1432at 1510.907 kb on - strand, within DVU1432at 1510.917 kb on - strand, within DVU1432at 1510.932 kb on + strand, within DVU1432at 1510.940 kb on - strand, within DVU1432at 1511.012 kb on + strand, within DVU1432at 1511.095 kb on + strand, within DVU1432at 1511.151 kb on - strand, within DVU1432at 1511.315 kb on + strand, within DVU1432at 1511.504 kb on - strand, within DVU1432at 1511.628 kb on + strand, within DVU1432at 1511.713 kb on + strand, within DVU1432at 1511.761 kb on + strand, within DVU1432at 1511.822 kb on - strand, within DVU1432at 1511.964 kb on + strand, within DVU1432at 1511.997 kb on + strand, within DVU1432at 1512.082 kb on - strand, within DVU1432at 1512.087 kb on + strand, within DVU1432at 1512.095 kb on - strand, within DVU1432at 1512.107 kb on - strand, within DVU1432at 1512.154 kb on - strand, within DVU1432at 1512.489 kb on - strand, within DVU1432at 1512.537 kb on - strand, within DVU1432at 1512.678 kb on + strand, within DVU1432at 1512.683 kb on + strand, within DVU1432at 1512.683 kb on + strand, within DVU1432at 1512.686 kb on - strand, within DVU1432at 1512.696 kb on - strand, within DVU1432at 1512.872 kb on + strandat 1512.872 kb on + strandat 1512.880 kb on - strandat 1512.968 kb on + strandat 1513.001 kb on + strandat 1513.137 kb on - strandat 1513.512 kb on - strand, within DVU1434at 1513.570 kb on - strand, within DVU1434at 1513.659 kb on - strandat 1513.676 kb on + strandat 1513.768 kb on + strandat 1513.768 kb on + strandat 1513.776 kb on - strandat 1513.776 kb on - strandat 1513.776 kb on - strandat 1513.776 kb on - strandat 1513.946 kb on + strand, within DVU1435at 1513.946 kb on + strand, within DVU1435at 1513.954 kb on - strand, within DVU1435at 1513.954 kb on - strand, within DVU1435at 1513.984 kb on + strand, within DVU1435at 1513.984 kb on + strand, within DVU1435at 1513.985 kb on + strand, within DVU1435at 1513.992 kb on - strand, within DVU1435at 1514.018 kb on + strand, within DVU1435at 1514.051 kb on - strand, within DVU1435

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polyethylene glycol 5%
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1,509,494 - DVU1431 0.66 -0.6
1,509,494 - DVU1431 0.66 -0.1
1,509,564 - DVU1431 0.69 +0.1
1,509,750 - DVU1431 0.77 +0.3
1,509,913 + DVU1431 0.85 -0.1
1,509,923 + DVU1431 0.85 +0.6
1,509,946 + DVU1431 0.86 +0.3
1,510,013 - DVU1431 0.89 +3.2
1,510,112 + +0.0
1,510,115 - -0.1
1,510,120 - +2.4
1,510,128 + -0.5
1,510,154 - -0.4
1,510,232 - +0.2
1,510,238 + -0.1
1,510,238 + -0.2
1,510,246 - -2.0
1,510,246 - -0.1
1,510,246 - +0.0
1,510,298 + -0.0
1,510,306 - -0.5
1,510,306 - +0.1
1,510,306 - +0.8
1,510,306 - +0.7
1,510,331 + -1.8
1,510,344 + +0.2
1,510,344 + +0.1
1,510,346 + -0.1
1,510,352 - -0.3
1,510,625 + -0.3
1,510,633 - +1.6
1,510,637 + +1.4
1,510,831 - DVU1432 0.14 -0.1
1,510,862 - DVU1432 0.15 -1.1
1,510,907 - DVU1432 0.17 -0.6
1,510,917 - DVU1432 0.17 -1.1
1,510,932 + DVU1432 0.18 -0.5
1,510,940 - DVU1432 0.18 -0.9
1,511,012 + DVU1432 0.21 -0.5
1,511,095 + DVU1432 0.24 -1.2
1,511,151 - DVU1432 0.26 -0.5
1,511,315 + DVU1432 0.33 -0.9
1,511,504 - DVU1432 0.40 -0.8
1,511,628 + DVU1432 0.45 -1.5
1,511,713 + DVU1432 0.48 -0.6
1,511,761 + DVU1432 0.50 -0.5
1,511,822 - DVU1432 0.52 -0.1
1,511,964 + DVU1432 0.58 -0.8
1,511,997 + DVU1432 0.59 -1.1
1,512,082 - DVU1432 0.62 -0.7
1,512,087 + DVU1432 0.62 +0.3
1,512,095 - DVU1432 0.63 -0.0
1,512,107 - DVU1432 0.63 +0.1
1,512,154 - DVU1432 0.65 -2.2
1,512,489 - DVU1432 0.78 -0.6
1,512,537 - DVU1432 0.80 -0.4
1,512,678 + DVU1432 0.85 -0.0
1,512,683 + DVU1432 0.85 +0.8
1,512,683 + DVU1432 0.85 -1.5
1,512,686 - DVU1432 0.85 -0.6
1,512,696 - DVU1432 0.86 +0.6
1,512,872 + -1.4
1,512,872 + -0.6
1,512,880 - -0.3
1,512,968 + +0.6
1,513,001 + +0.7
1,513,137 - -0.1
1,513,512 - DVU1434 0.58 -0.9
1,513,570 - DVU1434 0.73 -1.9
1,513,659 - -0.6
1,513,676 + +0.2
1,513,768 + -0.1
1,513,768 + -0.2
1,513,776 - -0.1
1,513,776 - +0.3
1,513,776 - -0.7
1,513,776 - +0.2
1,513,946 + DVU1435 0.18 -0.6
1,513,946 + DVU1435 0.18 -0.1
1,513,954 - DVU1435 0.19 +0.4
1,513,954 - DVU1435 0.19 -0.8
1,513,984 + DVU1435 0.22 +2.6
1,513,984 + DVU1435 0.22 +0.1
1,513,985 + DVU1435 0.22 +1.8
1,513,992 - DVU1435 0.22 +0.1
1,514,018 + DVU1435 0.24 -1.3
1,514,051 - DVU1435 0.27 -0.5

Or see this region's nucleotide sequence