Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0906
Experiment: MoYLS4 with Polyethylene glycol 5%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | MoYLS4 with Polyethylene glycol 5% |
---|---|---|---|---|---|
remove | |||||
997,385 | + | -0.5 | |||
997,539 | + | -0.6 | |||
997,545 | + | +0.6 | |||
997,668 | - | lipA | DVU0905 | 0.21 | -0.1 |
997,795 | + | lipA | DVU0905 | 0.35 | +1.7 |
997,803 | - | lipA | DVU0905 | 0.36 | -1.2 |
997,813 | - | lipA | DVU0905 | 0.37 | +0.8 |
997,813 | - | lipA | DVU0905 | 0.37 | -0.1 |
997,879 | - | lipA | DVU0905 | 0.45 | +0.3 |
997,907 | - | lipA | DVU0905 | 0.48 | -0.5 |
997,968 | + | lipA | DVU0905 | 0.55 | +0.1 |
997,976 | - | lipA | DVU0905 | 0.55 | -1.2 |
997,986 | - | lipA | DVU0905 | 0.57 | +0.6 |
997,986 | - | lipA | DVU0905 | 0.57 | -1.3 |
998,021 | - | lipA | DVU0905 | 0.60 | -2.3 |
998,069 | + | lipA | DVU0905 | 0.66 | -0.5 |
998,252 | - | lipA | DVU0905 | 0.86 | +1.4 |
998,264 | - | lipA | DVU0905 | 0.88 | +0.2 |
998,277 | - | lipA | DVU0905 | 0.89 | -0.7 |
998,277 | - | lipA | DVU0905 | 0.89 | +1.8 |
998,277 | - | lipA | DVU0905 | 0.89 | -1.6 |
998,383 | - | lipB | DVU0906 | 0.12 | +0.5 |
998,554 | - | lipB | DVU0906 | 0.38 | -0.6 |
998,587 | + | lipB | DVU0906 | 0.43 | +0.3 |
998,601 | + | lipB | DVU0906 | 0.45 | -0.4 |
998,859 | + | lipB | DVU0906 | 0.84 | +0.7 |
998,923 | - | +0.3 | |||
998,927 | + | +0.1 | |||
999,021 | + | -0.6 | |||
999,039 | + | -0.3 | |||
999,051 | + | -0.2 | |||
999,116 | + | +0.8 | |||
999,124 | - | -0.3 | |||
999,182 | - | -0.8 |
Or see this region's nucleotide sequence