Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0446

Experiment: MoYLS4 with Polyethylene glycol 5%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0445 and DVU0446 are separated by 148 nucleotidesDVU0446 and DVU0447 overlap by 8 nucleotidesDVU0447 and gmd are separated by 393 nucleotides DVU0445: DVU0445 - CBS domain protein (TIGR), at 504,169 to 505,893 DVU0445 DVU0446: DVU0446 - sodium/solute symporter family protein (TIGR), at 506,042 to 507,589 DVU0446 DVU0447: DVU0447 - membrane protein, putative (TIGR), at 507,582 to 507,899 DVU0447 DVU0448: gmd - GDP-mannose 4,6-dehydratase (TIGR), at 508,293 to 509,438 gmd Position (kb) 506 507 508Strain fitness (log2 ratio) -2 -1 0 1 2at 505.156 kb on - strand, within DVU0445at 505.176 kb on + strand, within DVU0445at 505.195 kb on + strand, within DVU0445at 505.230 kb on + strand, within DVU0445at 505.240 kb on + strand, within DVU0445at 505.267 kb on + strand, within DVU0445at 505.334 kb on - strand, within DVU0445at 505.363 kb on + strand, within DVU0445at 505.371 kb on - strand, within DVU0445at 505.492 kb on + strand, within DVU0445at 505.519 kb on + strand, within DVU0445at 505.527 kb on - strand, within DVU0445at 505.565 kb on - strand, within DVU0445at 505.585 kb on - strand, within DVU0445at 505.615 kb on + strand, within DVU0445at 505.627 kb on + strand, within DVU0445at 505.724 kb on - strandat 505.754 kb on - strandat 505.777 kb on + strandat 505.846 kb on - strandat 505.897 kb on + strandat 505.995 kb on - strandat 506.039 kb on + strandat 506.109 kb on - strandat 506.207 kb on + strand, within DVU0446at 506.207 kb on + strand, within DVU0446at 506.215 kb on - strand, within DVU0446at 506.216 kb on + strand, within DVU0446at 506.276 kb on + strand, within DVU0446at 506.284 kb on - strand, within DVU0446at 506.284 kb on - strand, within DVU0446at 506.284 kb on - strand, within DVU0446at 506.338 kb on + strand, within DVU0446at 506.346 kb on - strand, within DVU0446at 506.406 kb on + strand, within DVU0446at 506.475 kb on + strand, within DVU0446at 506.475 kb on - strand, within DVU0446at 506.490 kb on + strand, within DVU0446at 506.543 kb on + strand, within DVU0446at 506.551 kb on - strand, within DVU0446at 506.558 kb on - strand, within DVU0446at 506.693 kb on + strand, within DVU0446at 506.736 kb on - strand, within DVU0446at 506.796 kb on + strand, within DVU0446at 506.804 kb on - strand, within DVU0446at 506.804 kb on - strand, within DVU0446at 506.804 kb on - strand, within DVU0446at 506.848 kb on - strand, within DVU0446at 506.887 kb on - strand, within DVU0446at 507.205 kb on - strand, within DVU0446at 507.209 kb on + strand, within DVU0446at 507.237 kb on - strand, within DVU0446at 507.330 kb on + strand, within DVU0446at 507.415 kb on + strand, within DVU0446at 507.446 kb on + strandat 507.451 kb on - strandat 507.477 kb on + strandat 507.535 kb on - strandat 507.560 kb on - strandat 507.560 kb on - strandat 507.562 kb on + strandat 507.562 kb on + strandat 507.570 kb on - strandat 507.570 kb on - strandat 507.570 kb on - strandat 507.607 kb on - strandat 507.685 kb on + strand, within DVU0447at 507.719 kb on + strand, within DVU0447at 507.782 kb on + strand, within DVU0447at 507.800 kb on + strand, within DVU0447at 507.811 kb on + strand, within DVU0447at 507.819 kb on - strand, within DVU0447at 507.863 kb on - strand, within DVU0447at 507.898 kb on - strandat 507.907 kb on + strandat 507.915 kb on - strandat 507.917 kb on - strandat 507.998 kb on - strandat 507.998 kb on - strandat 508.016 kb on + strandat 508.024 kb on - strandat 508.024 kb on - strandat 508.048 kb on - strandat 508.053 kb on - strandat 508.080 kb on + strandat 508.088 kb on - strandat 508.374 kb on - strandat 508.536 kb on + strand, within gmdat 508.544 kb on - strand, within gmd

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polyethylene glycol 5%
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505,156 - DVU0445 0.57 +0.2
505,176 + DVU0445 0.58 -0.9
505,195 + DVU0445 0.59 +0.0
505,230 + DVU0445 0.62 -0.5
505,240 + DVU0445 0.62 -0.3
505,267 + DVU0445 0.64 -0.0
505,334 - DVU0445 0.68 +0.6
505,363 + DVU0445 0.69 -0.9
505,371 - DVU0445 0.70 -0.3
505,492 + DVU0445 0.77 +1.5
505,519 + DVU0445 0.78 +0.8
505,527 - DVU0445 0.79 -1.5
505,565 - DVU0445 0.81 -0.4
505,585 - DVU0445 0.82 -0.1
505,615 + DVU0445 0.84 +0.4
505,627 + DVU0445 0.85 -0.1
505,724 - -0.3
505,754 - -1.9
505,777 + +0.1
505,846 - +0.2
505,897 + -0.3
505,995 - -1.1
506,039 + -0.1
506,109 - +0.3
506,207 + DVU0446 0.11 +2.1
506,207 + DVU0446 0.11 -0.1
506,215 - DVU0446 0.11 +0.4
506,216 + DVU0446 0.11 +0.4
506,276 + DVU0446 0.15 +1.8
506,284 - DVU0446 0.16 -0.3
506,284 - DVU0446 0.16 -0.5
506,284 - DVU0446 0.16 -0.3
506,338 + DVU0446 0.19 -0.2
506,346 - DVU0446 0.20 -0.1
506,406 + DVU0446 0.24 +0.6
506,475 + DVU0446 0.28 +0.4
506,475 - DVU0446 0.28 +0.5
506,490 + DVU0446 0.29 +0.6
506,543 + DVU0446 0.32 -0.5
506,551 - DVU0446 0.33 -0.5
506,558 - DVU0446 0.33 +0.5
506,693 + DVU0446 0.42 +0.3
506,736 - DVU0446 0.45 -0.3
506,796 + DVU0446 0.49 -0.7
506,804 - DVU0446 0.49 -0.2
506,804 - DVU0446 0.49 -0.3
506,804 - DVU0446 0.49 +0.7
506,848 - DVU0446 0.52 +0.8
506,887 - DVU0446 0.55 -0.2
507,205 - DVU0446 0.75 +0.9
507,209 + DVU0446 0.75 +0.0
507,237 - DVU0446 0.77 +0.2
507,330 + DVU0446 0.83 -0.3
507,415 + DVU0446 0.89 +0.5
507,446 + -0.3
507,451 - +0.4
507,477 + +0.3
507,535 - +1.3
507,560 - +0.8
507,560 - +0.9
507,562 + -1.0
507,562 + -0.2
507,570 - +0.5
507,570 - -0.3
507,570 - -0.6
507,607 - -0.2
507,685 + DVU0447 0.32 -1.1
507,719 + DVU0447 0.43 -0.1
507,782 + DVU0447 0.63 -0.9
507,800 + DVU0447 0.69 +0.5
507,811 + DVU0447 0.72 -1.2
507,819 - DVU0447 0.75 -0.5
507,863 - DVU0447 0.88 -0.4
507,898 - -0.1
507,907 + -2.1
507,915 - +2.1
507,917 - +0.1
507,998 - +0.2
507,998 - -0.7
508,016 + +1.1
508,024 - +0.1
508,024 - -0.2
508,048 - -0.4
508,053 - +0.3
508,080 + -0.5
508,088 - -0.5
508,374 - +2.1
508,536 + gmd DVU0448 0.21 +0.5
508,544 - gmd DVU0448 0.22 +2.1

Or see this region's nucleotide sequence