Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1233

Experiment: MoYLS4 with Polyethylene glycol 5%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MoYLS4 with Polyethylene glycol 5%
1,319,361	+	amt	DVU1231	0.63	-0.3
1,319,368	+	amt	DVU1231	0.63	-1.5
1,319,564	-	amt	DVU1231	0.80	-0.2
1,319,597	+	amt	DVU1231	0.82	-0.1
1,319,605	-	amt	DVU1231	0.83	+0.5
1,319,615	+	amt	DVU1231	0.84	+0.5
1,319,653	+	amt	DVU1231	0.87	+1.2
1,319,670	+	amt	DVU1231	0.88	-0.1
1,319,683	+	amt	DVU1231	0.89	+1.2
1,319,707	+				-0.1
1,319,715	-				-0.4
1,319,820	-				-0.3
1,319,883	-				+0.1
1,319,902	+				+3.2
1,319,924	-				-0.3
1,319,980	+	glnB-1	DVU1232	0.14	-0.9
1,320,057	+	glnB-1	DVU1232	0.37	-0.1
1,320,105	+	glnB-1	DVU1232	0.51	-0.8
1,320,105	+	glnB-1	DVU1232	0.51	-0.2
1,320,138	+	glnB-1	DVU1232	0.61	-0.7
1,320,146	-	glnB-1	DVU1232	0.63	-0.2
1,320,146	-	glnB-1	DVU1232	0.63	-0.6
1,320,162	+	glnB-1	DVU1232	0.68	-0.4
1,320,168	-	glnB-1	DVU1232	0.70	-0.8
1,320,379	+				-1.1
1,320,483	-				-0.1
1,320,506	-				-0.2
1,320,508	+				+1.2
1,320,518	+				-0.3
1,320,518	+				-0.3
1,320,518	+				-0.2
1,320,526	-				-1.3
1,320,568	+				-0.8
1,320,568	+				-0.2
1,320,568	+				-0.3
1,320,660	-	glnD	DVU1233	0.12	+0.2
1,320,728	+	glnD	DVU1233	0.15	-0.5
1,320,743	+	glnD	DVU1233	0.15	+1.2
1,320,791	-	glnD	DVU1233	0.17	+0.9
1,320,813	-	glnD	DVU1233	0.18	+0.0
1,320,814	-	glnD	DVU1233	0.18	+0.0
1,320,821	-	glnD	DVU1233	0.18	-0.3
1,320,929	+	glnD	DVU1233	0.22	+0.3
1,320,938	+	glnD	DVU1233	0.22	-0.2
1,320,938	+	glnD	DVU1233	0.22	-0.5
1,321,016	-	glnD	DVU1233	0.25	+0.2
1,321,060	-	glnD	DVU1233	0.27	+0.6
1,321,266	+	glnD	DVU1233	0.35	-0.1
1,321,365	-	glnD	DVU1233	0.38	+0.0
1,321,497	+	glnD	DVU1233	0.43	+0.2
1,321,497	+	glnD	DVU1233	0.43	-0.3
1,321,505	-	glnD	DVU1233	0.43	-0.0
1,321,577	-	glnD	DVU1233	0.46	-0.4
1,321,587	-	glnD	DVU1233	0.46	-2.1
1,321,597	+	glnD	DVU1233	0.47	-0.0
1,321,628	+	glnD	DVU1233	0.48	-0.1
1,321,636	-	glnD	DVU1233	0.48	+2.2
1,321,779	+	glnD	DVU1233	0.53	+1.2
1,321,829	-	glnD	DVU1233	0.55	+0.2
1,321,858	-	glnD	DVU1233	0.56	-2.5
1,321,884	+	glnD	DVU1233	0.57	-0.2
1,321,892	-	glnD	DVU1233	0.58	+0.1
1,321,921	+	glnD	DVU1233	0.59	-0.8
1,322,047	+	glnD	DVU1233	0.63	-1.8
1,322,102	+	glnD	DVU1233	0.65	-2.0
1,322,117	+	glnD	DVU1233	0.66	-0.1
1,322,201	+	glnD	DVU1233	0.69	-0.2
1,322,232	+	glnD	DVU1233	0.70	-1.3
1,322,267	+	glnD	DVU1233	0.71	-0.9
1,322,268	-	glnD	DVU1233	0.71	-0.0
1,322,318	-	glnD	DVU1233	0.73	+0.0
1,322,323	+	glnD	DVU1233	0.73	-1.7
1,322,376	-	glnD	DVU1233	0.75	-1.0
1,322,423	-	glnD	DVU1233	0.77	-1.7
1,322,462	-	glnD	DVU1233	0.79	+0.6
1,322,673	+	glnD	DVU1233	0.86	-0.3
1,322,732	+	glnD	DVU1233	0.88	+0.1
1,322,759	-	glnD	DVU1233	0.89	-1.6
1,322,800	-				-1.3
1,322,815	+				-0.1
1,322,815	+				+0.9
1,322,823	-				+0.4
1,322,860	+				-0.2
1,322,860	+				+0.2
1,322,860	+				+0.4
1,322,860	+				-0.3
1,322,868	-				+0.3
1,322,868	-				-1.8
1,322,868	-				+0.8
1,322,868	-				-1.1
1,322,888	-				-0.1
1,322,917	+				-0.2
1,322,925	-				+0.7
1,322,966	+				-0.6
1,322,966	+				+0.4
1,322,973	+				+2.2
1,322,974	-				-0.3
1,322,983	-				+0.0
1,323,015	-				+0.8
1,323,060	+				+0.9
1,323,087	+				+0.3
1,323,098	-				+0.1
1,323,170	-				-0.4
1,323,278	-		DVU1234	0.22	+0.1
1,323,313	+		DVU1234	0.27	+0.1
1,323,397	+		DVU1234	0.38	-1.1
1,323,405	-		DVU1234	0.39	-0.3
1,323,405	-		DVU1234	0.39	-1.3
1,323,405	-		DVU1234	0.39	-0.4
1,323,410	-		DVU1234	0.40	-0.4
1,323,410	-		DVU1234	0.40	-0.6
1,323,438	-		DVU1234	0.44	-0.3
1,323,471	+		DVU1234	0.48	+0.5
1,323,486	+		DVU1234	0.50	-0.7
1,323,486	+		DVU1234	0.50	-1.1
1,323,486	+		DVU1234	0.50	-0.6
1,323,519	-		DVU1234	0.55	-0.0
1,323,573	-		DVU1234	0.62	-0.4
1,323,645	-		DVU1234	0.72	+0.1
1,323,684	-		DVU1234	0.77	-0.4
1,323,741	-		DVU1234	0.85	-0.3
1,323,819	+				-0.8
1,323,847	-				+0.3
1,323,937	-				-0.4