Experiment: RCH2_defined_glucose_5mM with Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_005170 and ABIE53_005171 are separated by 74 nucleotides ABIE53_005171 and ABIE53_005172 are separated by 15 nucleotides ABIE53_005172 and ABIE53_005173 overlap by 1 nucleotides ABIE53_005173 and ABIE53_005174 are separated by 73 nucleotides
ABIE53_005170: ABIE53_005170 - GntR family transcriptional repressor for pyruvate dehydrogenase complex, at 1,425,100 to 1,425,804
_005170
ABIE53_005171: ABIE53_005171 - putative dehydrogenase, at 1,425,879 to 1,426,769
_005171
ABIE53_005172: ABIE53_005172 - uncharacterized protein YgbK (DUF1537 family), at 1,426,785 to 1,428,092
_005172
ABIE53_005173: ABIE53_005173 - ribulose-5-phosphate 4-epimerase/fuculose-1-phosphate aldolase, at 1,428,092 to 1,428,802
_005173
ABIE53_005174: ABIE53_005174 - D-galactonate transporter, at 1,428,876 to 1,430,210
_005174
Position (kb) 1426
1427
1428
1429 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1425.854 kb on + strand at 1425.855 kb on - strand at 1425.855 kb on - strand at 1426.311 kb on + strand, within ABIE53_005171 at 1426.311 kb on + strand, within ABIE53_005171 at 1426.492 kb on - strand, within ABIE53_005171 at 1426.553 kb on - strand, within ABIE53_005171 at 1426.553 kb on - strand, within ABIE53_005171 at 1426.553 kb on - strand, within ABIE53_005171 at 1426.793 kb on + strand at 1426.859 kb on + strand at 1426.860 kb on - strand at 1427.328 kb on + strand, within ABIE53_005172 at 1427.434 kb on + strand, within ABIE53_005172 at 1427.434 kb on + strand, within ABIE53_005172 at 1427.436 kb on + strand, within ABIE53_005172 at 1427.437 kb on - strand, within ABIE53_005172 at 1427.727 kb on + strand, within ABIE53_005172 at 1427.757 kb on + strand, within ABIE53_005172 at 1427.758 kb on - strand, within ABIE53_005172 at 1427.758 kb on - strand, within ABIE53_005172 at 1428.022 kb on + strand at 1428.097 kb on + strand at 1428.098 kb on - strand at 1428.230 kb on + strand, within ABIE53_005173 at 1428.230 kb on + strand, within ABIE53_005173 at 1428.233 kb on - strand, within ABIE53_005173 at 1428.407 kb on + strand, within ABIE53_005173 at 1428.407 kb on + strand, within ABIE53_005173 at 1428.408 kb on - strand, within ABIE53_005173 at 1428.442 kb on + strand, within ABIE53_005173 at 1428.501 kb on + strand, within ABIE53_005173 at 1428.501 kb on + strand, within ABIE53_005173 at 1428.502 kb on - strand, within ABIE53_005173 at 1428.524 kb on + strand, within ABIE53_005173 at 1428.524 kb on + strand, within ABIE53_005173 at 1428.525 kb on - strand, within ABIE53_005173 at 1428.683 kb on + strand, within ABIE53_005173 at 1428.684 kb on - strand, within ABIE53_005173 at 1428.684 kb on - strand, within ABIE53_005173 at 1428.828 kb on + strand at 1428.885 kb on + strand at 1428.885 kb on + strand at 1428.886 kb on - strand at 1428.953 kb on + strand at 1428.953 kb on + strand at 1428.954 kb on - strand at 1428.954 kb on - strand at 1429.002 kb on + strand at 1429.015 kb on - strand, within ABIE53_005174
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Sucrose 5 mM remove 1,425,854 + -0.3 1,425,855 - -0.1 1,425,855 - -1.4 1,426,311 + ABIE53_005171 0.48 -0.0 1,426,311 + ABIE53_005171 0.48 -0.2 1,426,492 - ABIE53_005171 0.69 -0.8 1,426,553 - ABIE53_005171 0.76 -2.2 1,426,553 - ABIE53_005171 0.76 +1.4 1,426,553 - ABIE53_005171 0.76 -1.8 1,426,793 + +0.1 1,426,859 + +0.4 1,426,860 - +1.1 1,427,328 + ABIE53_005172 0.42 -0.6 1,427,434 + ABIE53_005172 0.50 +0.3 1,427,434 + ABIE53_005172 0.50 -0.0 1,427,436 + ABIE53_005172 0.50 -1.1 1,427,437 - ABIE53_005172 0.50 +0.4 1,427,727 + ABIE53_005172 0.72 +1.0 1,427,757 + ABIE53_005172 0.74 +0.9 1,427,758 - ABIE53_005172 0.74 -0.0 1,427,758 - ABIE53_005172 0.74 -0.2 1,428,022 + -1.0 1,428,097 + +0.5 1,428,098 - -0.3 1,428,230 + ABIE53_005173 0.19 -0.3 1,428,230 + ABIE53_005173 0.19 -0.0 1,428,233 - ABIE53_005173 0.20 +0.0 1,428,407 + ABIE53_005173 0.44 -0.3 1,428,407 + ABIE53_005173 0.44 -1.6 1,428,408 - ABIE53_005173 0.44 +0.8 1,428,442 + ABIE53_005173 0.49 -0.8 1,428,501 + ABIE53_005173 0.58 -0.0 1,428,501 + ABIE53_005173 0.58 -4.7 1,428,502 - ABIE53_005173 0.58 +1.5 1,428,524 + ABIE53_005173 0.61 -2.5 1,428,524 + ABIE53_005173 0.61 -0.8 1,428,525 - ABIE53_005173 0.61 -1.5 1,428,683 + ABIE53_005173 0.83 -0.0 1,428,684 - ABIE53_005173 0.83 -0.0 1,428,684 - ABIE53_005173 0.83 +0.4 1,428,828 + -2.1 1,428,885 + -2.2 1,428,885 + -0.3 1,428,886 - -1.0 1,428,953 + -1.3 1,428,953 + -0.1 1,428,954 - +0.3 1,428,954 - -0.3 1,429,002 + -0.7 1,429,015 - ABIE53_005174 0.10 -0.6
Or see this region's nucleotide sequence