Experiment: RCH2_defined_glucose_5mM with Sucrose 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004568 and ABIE53_004569 are separated by 230 nucleotides ABIE53_004569 and ABIE53_004570 overlap by 94 nucleotides ABIE53_004570 and ABIE53_004571 are separated by 67 nucleotides ABIE53_004571 and ABIE53_004572 are separated by 199 nucleotides
ABIE53_004568: ABIE53_004568 - hypothetical protein, at 755,427 to 756,455
_004568
ABIE53_004569: ABIE53_004569 - GNAT superfamily N-acetyltransferase, at 756,686 to 757,387
_004569
ABIE53_004570: ABIE53_004570 - flavin reductase (DIM6/NTAB) family NADH-FMN oxidoreductase RutF, at 757,294 to 757,893
_004570
ABIE53_004571: ABIE53_004571 - hypothetical protein, at 757,961 to 758,362
_004571
ABIE53_004572: ABIE53_004572 - GntR family transcriptional regulator/MocR family aminotransferase, at 758,562 to 760,076
_004572
Position (kb) 757
758 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 756.312 kb on + strand, within ABIE53_004568 at 756.312 kb on + strand, within ABIE53_004568 at 756.313 kb on - strand, within ABIE53_004568 at 756.358 kb on + strand at 756.359 kb on - strand at 756.366 kb on + strand at 756.366 kb on + strand at 756.367 kb on - strand at 756.367 kb on - strand at 756.423 kb on + strand at 756.423 kb on + strand at 756.423 kb on + strand at 756.424 kb on - strand at 756.458 kb on - strand at 756.465 kb on + strand at 756.510 kb on + strand at 756.557 kb on + strand at 756.557 kb on + strand at 756.557 kb on + strand at 756.557 kb on + strand at 756.557 kb on + strand at 756.557 kb on + strand at 756.558 kb on - strand at 756.558 kb on - strand at 756.558 kb on - strand at 756.558 kb on - strand at 756.558 kb on - strand at 756.558 kb on - strand at 756.558 kb on - strand at 756.558 kb on - strand at 756.558 kb on - strand at 756.580 kb on + strand at 756.580 kb on + strand at 756.580 kb on + strand at 756.580 kb on + strand at 756.581 kb on - strand at 756.581 kb on - strand at 756.581 kb on - strand at 756.581 kb on - strand at 756.581 kb on - strand at 756.581 kb on - strand at 756.671 kb on + strand at 756.671 kb on + strand at 756.671 kb on + strand at 756.671 kb on + strand at 756.671 kb on + strand at 756.671 kb on + strand at 756.671 kb on + strand at 756.671 kb on + strand at 756.671 kb on + strand at 756.671 kb on + strand at 756.672 kb on - strand at 756.672 kb on - strand at 756.672 kb on - strand at 756.672 kb on - strand at 756.672 kb on - strand at 756.672 kb on - strand at 756.673 kb on + strand at 756.673 kb on + strand at 756.674 kb on - strand at 756.796 kb on - strand, within ABIE53_004569 at 756.828 kb on - strand, within ABIE53_004569 at 756.828 kb on - strand, within ABIE53_004569 at 756.828 kb on - strand, within ABIE53_004569 at 756.828 kb on - strand, within ABIE53_004569 at 756.828 kb on - strand, within ABIE53_004569 at 756.828 kb on - strand, within ABIE53_004569 at 756.828 kb on - strand, within ABIE53_004569 at 756.828 kb on - strand, within ABIE53_004569 at 756.828 kb on - strand, within ABIE53_004569 at 756.835 kb on - strand, within ABIE53_004569 at 756.835 kb on - strand, within ABIE53_004569 at 756.851 kb on + strand, within ABIE53_004569 at 756.851 kb on + strand, within ABIE53_004569 at 756.852 kb on - strand, within ABIE53_004569 at 756.852 kb on - strand, within ABIE53_004569 at 756.852 kb on - strand, within ABIE53_004569 at 756.852 kb on - strand, within ABIE53_004569 at 756.852 kb on - strand, within ABIE53_004569 at 756.852 kb on - strand, within ABIE53_004569 at 756.852 kb on - strand, within ABIE53_004569 at 757.061 kb on + strand, within ABIE53_004569 at 757.061 kb on + strand, within ABIE53_004569 at 757.061 kb on + strand, within ABIE53_004569 at 757.062 kb on - strand, within ABIE53_004569 at 757.062 kb on - strand, within ABIE53_004569 at 757.062 kb on - strand, within ABIE53_004569 at 757.073 kb on + strand, within ABIE53_004569 at 757.074 kb on - strand, within ABIE53_004569 at 757.074 kb on - strand, within ABIE53_004569 at 757.074 kb on - strand, within ABIE53_004569 at 757.103 kb on + strand, within ABIE53_004569 at 757.103 kb on + strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.104 kb on - strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.118 kb on + strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.119 kb on - strand, within ABIE53_004569 at 757.253 kb on + strand, within ABIE53_004569 at 757.253 kb on + strand, within ABIE53_004569 at 757.254 kb on - strand, within ABIE53_004569 at 757.254 kb on - strand, within ABIE53_004569 at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.385 kb on + strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.386 kb on - strand at 757.440 kb on - strand, within ABIE53_004570 at 757.440 kb on - strand, within ABIE53_004570 at 757.440 kb on - strand, within ABIE53_004570 at 757.846 kb on + strand at 757.847 kb on - strand at 757.847 kb on - strand at 757.884 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.893 kb on + strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 757.894 kb on - strand at 758.002 kb on + strand, within ABIE53_004571 at 758.002 kb on + strand, within ABIE53_004571 at 758.002 kb on + strand, within ABIE53_004571 at 758.003 kb on - strand, within ABIE53_004571 at 758.003 kb on - strand, within ABIE53_004571 at 758.003 kb on - strand, within ABIE53_004571 at 758.003 kb on - strand, within ABIE53_004571 at 758.296 kb on - strand, within ABIE53_004571 at 758.379 kb on + strand at 758.390 kb on - strand at 758.390 kb on - strand at 758.514 kb on + strand at 758.514 kb on + strand at 758.514 kb on + strand at 758.514 kb on + strand at 758.526 kb on + strand at 758.563 kb on + strand at 758.564 kb on - strand at 758.844 kb on - strand, within ABIE53_004572 at 758.844 kb on - strand, within ABIE53_004572 at 758.844 kb on - strand, within ABIE53_004572 at 758.844 kb on - strand, within ABIE53_004572 at 758.878 kb on + strand, within ABIE53_004572
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Sucrose 5 mM remove 756,312 + ABIE53_004568 0.86 -0.9 756,312 + ABIE53_004568 0.86 +4.1 756,313 - ABIE53_004568 0.86 -0.4 756,358 + -0.8 756,359 - +0.3 756,366 + -1.2 756,366 + +0.1 756,367 - -0.5 756,367 - -1.5 756,423 + +1.1 756,423 + -0.5 756,423 + +0.1 756,424 - -1.3 756,458 - -2.4 756,465 + -2.4 756,510 + -1.3 756,557 + -0.2 756,557 + -0.1 756,557 + -0.2 756,557 + -0.2 756,557 + -2.1 756,557 + +0.1 756,558 - -0.2 756,558 - -2.5 756,558 - +0.1 756,558 - +2.1 756,558 - -0.2 756,558 - +0.1 756,558 - +1.1 756,558 - -0.9 756,558 - +0.5 756,580 + +0.9 756,580 + -0.6 756,580 + -1.3 756,580 + +0.5 756,581 - +0.2 756,581 - -1.3 756,581 - -2.7 756,581 - +0.5 756,581 - -1.2 756,581 - -0.7 756,671 + +2.2 756,671 + -0.7 756,671 + +0.8 756,671 + +0.1 756,671 + -1.3 756,671 + +2.1 756,671 + -1.5 756,671 + +2.5 756,671 + -0.1 756,671 + +0.5 756,672 - -0.2 756,672 - +0.6 756,672 - -1.2 756,672 - +1.8 756,672 - -0.2 756,672 - +0.1 756,673 + -0.7 756,673 + -1.3 756,674 - -0.8 756,796 - ABIE53_004569 0.16 +0.8 756,828 - ABIE53_004569 0.20 +0.5 756,828 - ABIE53_004569 0.20 -0.9 756,828 - ABIE53_004569 0.20 -3.3 756,828 - ABIE53_004569 0.20 +1.3 756,828 - ABIE53_004569 0.20 -1.5 756,828 - ABIE53_004569 0.20 +2.1 756,828 - ABIE53_004569 0.20 -3.0 756,828 - ABIE53_004569 0.20 -0.5 756,828 - ABIE53_004569 0.20 +0.1 756,835 - ABIE53_004569 0.21 +0.1 756,835 - ABIE53_004569 0.21 -2.1 756,851 + ABIE53_004569 0.24 +0.1 756,851 + ABIE53_004569 0.24 -1.3 756,852 - ABIE53_004569 0.24 +2.1 756,852 - ABIE53_004569 0.24 -0.2 756,852 - ABIE53_004569 0.24 +4.4 756,852 - ABIE53_004569 0.24 -2.2 756,852 - ABIE53_004569 0.24 +0.5 756,852 - ABIE53_004569 0.24 -1.9 756,852 - ABIE53_004569 0.24 -0.2 757,061 + ABIE53_004569 0.53 +1.1 757,061 + ABIE53_004569 0.53 -0.2 757,061 + ABIE53_004569 0.53 -0.2 757,062 - ABIE53_004569 0.54 -1.5 757,062 - ABIE53_004569 0.54 +0.0 757,062 - ABIE53_004569 0.54 -0.9 757,073 + ABIE53_004569 0.55 -1.2 757,074 - ABIE53_004569 0.55 -0.2 757,074 - ABIE53_004569 0.55 +0.1 757,074 - ABIE53_004569 0.55 +2.0 757,103 + ABIE53_004569 0.59 -0.5 757,103 + ABIE53_004569 0.59 +2.1 757,104 - ABIE53_004569 0.60 +1.4 757,104 - ABIE53_004569 0.60 -3.5 757,104 - ABIE53_004569 0.60 +0.7 757,104 - ABIE53_004569 0.60 -0.5 757,104 - ABIE53_004569 0.60 +0.4 757,118 + ABIE53_004569 0.62 -1.5 757,118 + ABIE53_004569 0.62 -2.0 757,118 + ABIE53_004569 0.62 +0.1 757,118 + ABIE53_004569 0.62 +1.1 757,118 + ABIE53_004569 0.62 -0.1 757,118 + ABIE53_004569 0.62 +0.9 757,118 + ABIE53_004569 0.62 -1.2 757,118 + ABIE53_004569 0.62 +2.5 757,119 - ABIE53_004569 0.62 -0.9 757,119 - ABIE53_004569 0.62 -1.3 757,119 - ABIE53_004569 0.62 +0.3 757,119 - ABIE53_004569 0.62 -1.1 757,119 - ABIE53_004569 0.62 +0.1 757,119 - ABIE53_004569 0.62 -0.2 757,119 - ABIE53_004569 0.62 +0.2 757,119 - ABIE53_004569 0.62 +1.0 757,253 + ABIE53_004569 0.81 -0.2 757,253 + ABIE53_004569 0.81 -2.3 757,254 - ABIE53_004569 0.81 -0.2 757,254 - ABIE53_004569 0.81 -2.1 757,385 + +1.6 757,385 + -0.1 757,385 + +1.3 757,385 + -0.7 757,385 + -0.6 757,385 + -0.1 757,385 + +0.5 757,385 + -1.0 757,386 - -2.2 757,386 - +0.1 757,386 - -1.2 757,386 - -0.1 757,386 - +2.9 757,386 - +1.8 757,386 - +0.1 757,386 - +1.6 757,386 - -0.7 757,386 - -0.9 757,440 - ABIE53_004570 0.24 -0.9 757,440 - ABIE53_004570 0.24 -0.9 757,440 - ABIE53_004570 0.24 -0.5 757,846 + -0.2 757,847 - -3.1 757,847 - -2.0 757,884 + -0.2 757,893 + +0.1 757,893 + +0.1 757,893 + +0.1 757,893 + +0.5 757,893 + +0.8 757,893 + +1.4 757,893 + -1.0 757,893 + -1.5 757,894 - +0.1 757,894 - -0.2 757,894 - +0.1 757,894 - +0.9 757,894 - +0.6 757,894 - -1.9 757,894 - -2.0 757,894 - -0.2 757,894 - +2.4 757,894 - -0.3 757,894 - +0.4 757,894 - +0.4 757,894 - -0.9 758,002 + ABIE53_004571 0.10 -0.1 758,002 + ABIE53_004571 0.10 -0.3 758,002 + ABIE53_004571 0.10 -1.1 758,003 - ABIE53_004571 0.10 -1.3 758,003 - ABIE53_004571 0.10 -0.7 758,003 - ABIE53_004571 0.10 +0.6 758,003 - ABIE53_004571 0.10 -0.9 758,296 - ABIE53_004571 0.83 -1.6 758,379 + -1.2 758,390 - -1.0 758,390 - -1.3 758,514 + -2.1 758,514 + -1.2 758,514 + -2.2 758,514 + +0.5 758,526 + +0.1 758,563 + +2.1 758,564 - -1.2 758,844 - ABIE53_004572 0.19 -1.1 758,844 - ABIE53_004572 0.19 +0.1 758,844 - ABIE53_004572 0.19 -1.7 758,844 - ABIE53_004572 0.19 +1.1 758,878 + ABIE53_004572 0.21 -2.6
Or see this region's nucleotide sequence