Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004074

Experiment: RCH2_defined_glucose_5mM with Sucrose 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004072 and ABIE53_004073 are separated by 132 nucleotidesABIE53_004073 and ABIE53_004074 are separated by 117 nucleotidesABIE53_004074 and ABIE53_004075 are separated by 58 nucleotidesABIE53_004075 and ABIE53_004076 overlap by 4 nucleotides ABIE53_004072: ABIE53_004072 - gamma-glutamylputrescine oxidase, at 236,595 to 237,884 _004072 ABIE53_004073: ABIE53_004073 - AcrR family transcriptional regulator, at 238,017 to 238,727 _004073 ABIE53_004074: ABIE53_004074 - ACS family D-galactonate transporter-like MFS transporter, at 238,845 to 240,218 _004074 ABIE53_004075: ABIE53_004075 - shikimate dehydrogenase, at 240,277 to 241,167 _004075 ABIE53_004076: ABIE53_004076 - 3-dehydroquinate dehydratase-2, at 241,164 to 241,619 _004076 Position (kb) 238 239 240 241Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 237.984 kb on + strandat 237.984 kb on + strandat 237.984 kb on + strandat 237.984 kb on + strandat 237.985 kb on - strandat 237.985 kb on - strandat 237.985 kb on - strandat 237.985 kb on - strandat 238.114 kb on - strand, within ABIE53_004073at 238.239 kb on + strand, within ABIE53_004073at 238.239 kb on + strand, within ABIE53_004073at 238.239 kb on + strand, within ABIE53_004073at 238.239 kb on + strand, within ABIE53_004073at 238.239 kb on + strand, within ABIE53_004073at 238.240 kb on - strand, within ABIE53_004073at 238.240 kb on - strand, within ABIE53_004073at 238.240 kb on - strand, within ABIE53_004073at 238.242 kb on + strand, within ABIE53_004073at 238.242 kb on + strand, within ABIE53_004073at 238.242 kb on + strand, within ABIE53_004073at 238.243 kb on - strand, within ABIE53_004073at 238.243 kb on - strand, within ABIE53_004073at 238.245 kb on + strand, within ABIE53_004073at 238.245 kb on + strand, within ABIE53_004073at 238.269 kb on + strand, within ABIE53_004073at 238.269 kb on + strand, within ABIE53_004073at 238.293 kb on + strand, within ABIE53_004073at 238.293 kb on + strand, within ABIE53_004073at 238.294 kb on - strand, within ABIE53_004073at 238.294 kb on - strand, within ABIE53_004073at 238.449 kb on + strand, within ABIE53_004073at 238.450 kb on - strand, within ABIE53_004073at 238.472 kb on + strand, within ABIE53_004073at 238.472 kb on + strand, within ABIE53_004073at 238.504 kb on + strand, within ABIE53_004073at 238.504 kb on + strand, within ABIE53_004073at 238.504 kb on + strand, within ABIE53_004073at 238.504 kb on + strand, within ABIE53_004073at 238.619 kb on + strand, within ABIE53_004073at 238.620 kb on - strand, within ABIE53_004073at 238.883 kb on + strandat 238.884 kb on - strandat 238.884 kb on - strandat 238.891 kb on + strandat 238.892 kb on - strandat 238.892 kb on - strandat 238.967 kb on + strandat 238.968 kb on - strandat 239.152 kb on + strand, within ABIE53_004074at 239.152 kb on + strand, within ABIE53_004074at 239.152 kb on + strand, within ABIE53_004074at 239.152 kb on + strand, within ABIE53_004074at 239.152 kb on + strand, within ABIE53_004074at 239.152 kb on + strand, within ABIE53_004074at 239.153 kb on - strand, within ABIE53_004074at 239.333 kb on + strand, within ABIE53_004074at 239.333 kb on + strand, within ABIE53_004074at 239.333 kb on + strand, within ABIE53_004074at 239.353 kb on + strand, within ABIE53_004074at 239.354 kb on - strand, within ABIE53_004074at 239.507 kb on + strand, within ABIE53_004074at 239.508 kb on - strand, within ABIE53_004074at 239.508 kb on - strand, within ABIE53_004074at 239.508 kb on - strand, within ABIE53_004074at 239.508 kb on - strand, within ABIE53_004074at 239.540 kb on + strand, within ABIE53_004074at 239.541 kb on - strand, within ABIE53_004074at 239.541 kb on - strand, within ABIE53_004074at 239.541 kb on - strand, within ABIE53_004074at 239.616 kb on + strand, within ABIE53_004074at 239.617 kb on - strand, within ABIE53_004074at 239.641 kb on + strand, within ABIE53_004074at 239.642 kb on - strand, within ABIE53_004074at 239.642 kb on - strand, within ABIE53_004074at 239.712 kb on - strand, within ABIE53_004074at 239.712 kb on - strand, within ABIE53_004074at 239.728 kb on + strand, within ABIE53_004074at 239.728 kb on + strand, within ABIE53_004074at 239.729 kb on - strand, within ABIE53_004074at 239.971 kb on + strand, within ABIE53_004074at 239.971 kb on + strand, within ABIE53_004074at 240.077 kb on - strand, within ABIE53_004074at 240.112 kb on - strandat 240.218 kb on + strandat 240.218 kb on + strandat 240.239 kb on + strandat 240.240 kb on - strandat 240.243 kb on + strandat 240.243 kb on + strandat 240.244 kb on - strandat 240.244 kb on - strandat 240.309 kb on - strandat 240.346 kb on - strandat 240.369 kb on - strand, within ABIE53_004075at 240.449 kb on + strand, within ABIE53_004075at 240.920 kb on + strand, within ABIE53_004075at 240.941 kb on + strand, within ABIE53_004075at 241.028 kb on + strand, within ABIE53_004075at 241.028 kb on + strand, within ABIE53_004075at 241.028 kb on + strand, within ABIE53_004075at 241.028 kb on + strand, within ABIE53_004075at 241.029 kb on - strand, within ABIE53_004075at 241.029 kb on - strand, within ABIE53_004075at 241.116 kb on - strandat 241.161 kb on + strandat 241.184 kb on + strandat 241.185 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_glucose_5mM with Sucrose 5 mM
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237,984 + -1.2
237,984 + +1.0
237,984 + -0.6
237,984 + +0.4
237,985 - -0.0
237,985 - +0.6
237,985 - -0.2
237,985 - -1.0
238,114 - ABIE53_004073 0.14 -0.6
238,239 + ABIE53_004073 0.31 -0.8
238,239 + ABIE53_004073 0.31 -0.6
238,239 + ABIE53_004073 0.31 +1.0
238,239 + ABIE53_004073 0.31 -3.0
238,239 + ABIE53_004073 0.31 -0.6
238,240 - ABIE53_004073 0.31 +0.1
238,240 - ABIE53_004073 0.31 -1.5
238,240 - ABIE53_004073 0.31 -3.5
238,242 + ABIE53_004073 0.32 -0.4
238,242 + ABIE53_004073 0.32 -1.6
238,242 + ABIE53_004073 0.32 +2.0
238,243 - ABIE53_004073 0.32 -1.2
238,243 - ABIE53_004073 0.32 -1.8
238,245 + ABIE53_004073 0.32 +0.2
238,245 + ABIE53_004073 0.32 -0.8
238,269 + ABIE53_004073 0.35 -0.4
238,269 + ABIE53_004073 0.35 -1.0
238,293 + ABIE53_004073 0.39 -1.4
238,293 + ABIE53_004073 0.39 -2.3
238,294 - ABIE53_004073 0.39 -1.0
238,294 - ABIE53_004073 0.39 +0.2
238,449 + ABIE53_004073 0.61 +1.0
238,450 - ABIE53_004073 0.61 +0.4
238,472 + ABIE53_004073 0.64 -0.1
238,472 + ABIE53_004073 0.64 +1.1
238,504 + ABIE53_004073 0.68 -0.5
238,504 + ABIE53_004073 0.68 -2.8
238,504 + ABIE53_004073 0.68 -0.6
238,504 + ABIE53_004073 0.68 -3.0
238,619 + ABIE53_004073 0.85 -2.4
238,620 - ABIE53_004073 0.85 +0.3
238,883 + -1.2
238,884 - -0.6
238,884 - -0.5
238,891 + -1.0
238,892 - -1.6
238,892 - -1.2
238,967 + -0.4
238,968 - -1.0
239,152 + ABIE53_004074 0.22 -1.8
239,152 + ABIE53_004074 0.22 -1.2
239,152 + ABIE53_004074 0.22 +2.4
239,152 + ABIE53_004074 0.22 -1.4
239,152 + ABIE53_004074 0.22 +0.4
239,152 + ABIE53_004074 0.22 -1.5
239,153 - ABIE53_004074 0.22 -0.6
239,333 + ABIE53_004074 0.36 -0.6
239,333 + ABIE53_004074 0.36 -0.8
239,333 + ABIE53_004074 0.36 -1.7
239,353 + ABIE53_004074 0.37 -1.3
239,354 - ABIE53_004074 0.37 -1.7
239,507 + ABIE53_004074 0.48 -1.4
239,508 - ABIE53_004074 0.48 +1.8
239,508 - ABIE53_004074 0.48 -1.9
239,508 - ABIE53_004074 0.48 -0.0
239,508 - ABIE53_004074 0.48 +2.8
239,540 + ABIE53_004074 0.51 -1.2
239,541 - ABIE53_004074 0.51 -2.1
239,541 - ABIE53_004074 0.51 +0.3
239,541 - ABIE53_004074 0.51 -1.0
239,616 + ABIE53_004074 0.56 -1.0
239,617 - ABIE53_004074 0.56 +0.3
239,641 + ABIE53_004074 0.58 -0.0
239,642 - ABIE53_004074 0.58 +0.3
239,642 - ABIE53_004074 0.58 -0.4
239,712 - ABIE53_004074 0.63 -1.5
239,712 - ABIE53_004074 0.63 +1.0
239,728 + ABIE53_004074 0.64 +0.2
239,728 + ABIE53_004074 0.64 -4.2
239,729 - ABIE53_004074 0.64 -1.9
239,971 + ABIE53_004074 0.82 +1.6
239,971 + ABIE53_004074 0.82 +0.2
240,077 - ABIE53_004074 0.90 -0.7
240,112 - -2.2
240,218 + +2.2
240,218 + +0.4
240,239 + +1.6
240,240 - -0.0
240,243 + -1.2
240,243 + +0.5
240,244 - -0.4
240,244 - -2.6
240,309 - +0.4
240,346 - +1.2
240,369 - ABIE53_004075 0.10 +1.8
240,449 + ABIE53_004075 0.19 +0.2
240,920 + ABIE53_004075 0.72 -1.7
240,941 + ABIE53_004075 0.75 -0.0
241,028 + ABIE53_004075 0.84 +0.2
241,028 + ABIE53_004075 0.84 +0.4
241,028 + ABIE53_004075 0.84 +0.7
241,028 + ABIE53_004075 0.84 -0.3
241,029 - ABIE53_004075 0.84 +0.7
241,029 - ABIE53_004075 0.84 -0.7
241,116 - -0.0
241,161 + -3.0
241,184 + -1.0
241,185 - -1.0

Or see this region's nucleotide sequence