Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001919

Experiment: RCH2_defined_glucose_5mM with Sucrose 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	RCH2_defined_glucose_5mM with Sucrose 5 mM
2,170,192	+		ABIE53_001918	0.71	-1.3
2,170,192	+		ABIE53_001918	0.71	-0.0
2,170,192	+		ABIE53_001918	0.71	-1.3
2,170,327	+		ABIE53_001918	0.79	+1.0
2,170,356	+		ABIE53_001918	0.81	+0.8
2,170,380	+		ABIE53_001918	0.82	-0.8
2,170,381	-		ABIE53_001918	0.82	-1.7
2,170,381	-		ABIE53_001918	0.82	+0.3
2,170,436	+		ABIE53_001918	0.85	-0.9
2,170,437	-		ABIE53_001918	0.85	-0.6
2,170,598	-				-0.8
2,170,627	+				-0.6
2,170,627	+				-1.6
2,170,663	+				+2.0
2,170,663	+				-0.3
2,170,663	+				+1.3
2,170,687	+				-1.6
2,170,687	+				+1.6
2,170,688	-				-0.3
2,170,688	-				-0.6
2,170,703	+				-2.0
2,170,704	-				+0.7
2,170,704	-				-1.1
2,170,704	-				+0.4
2,170,705	+				-0.8
2,170,715	-				-1.0
2,170,715	-				-0.6
2,170,760	+				-1.3
2,170,767	+				+0.3
2,170,768	-				+0.1
2,170,810	+				+1.2
2,170,904	+				-0.8
2,170,934	+				-2.8
2,170,934	+				+3.0
2,170,934	+				-0.3
2,170,935	-				+1.4
2,170,996	+				-0.0
2,170,996	+				+0.4
2,170,996	+				+2.3
2,170,996	+				-0.6
2,170,996	+				-0.0
2,170,996	+				-1.0
2,170,996	+				+1.6
2,170,997	-				+0.4
2,170,997	-				+1.0
2,170,997	-				+2.0
2,170,997	-				-0.3
2,171,106	+		ABIE53_001919	0.25	-0.6
2,171,109	+		ABIE53_001919	0.26	+1.2
2,171,110	-		ABIE53_001919	0.26	+1.2
2,171,118	+		ABIE53_001919	0.28	+0.2
2,171,143	+		ABIE53_001919	0.34	-0.9
2,171,156	+		ABIE53_001919	0.38	+1.0
2,171,156	+		ABIE53_001919	0.38	+2.8
2,171,157	-		ABIE53_001919	0.38	-0.0
2,171,213	+		ABIE53_001919	0.51	+1.0
2,171,213	+		ABIE53_001919	0.51	-1.5
2,171,214	-		ABIE53_001919	0.52	+0.3
2,171,350	+		ABIE53_001919	0.85	-1.0
2,171,350	+		ABIE53_001919	0.85	+3.3
2,171,351	-		ABIE53_001919	0.85	-0.6
2,171,384	-				-1.3
2,171,423	+				-1.0
2,171,427	+				+0.1
2,171,427	+				-0.6
2,171,427	+				+0.9
2,171,427	+				+2.0
2,171,539	-		ABIE53_001920	0.24	+1.5
2,171,586	-		ABIE53_001920	0.32	-1.3
2,171,586	-		ABIE53_001920	0.32	-0.6
2,171,616	+		ABIE53_001920	0.37	+0.4
2,171,616	+		ABIE53_001920	0.37	-0.0
2,171,617	-		ABIE53_001920	0.37	+0.2
2,171,617	-		ABIE53_001920	0.37	-2.1
2,171,617	-		ABIE53_001920	0.37	-0.5
2,171,907	+		ABIE53_001920	0.85	-1.9
2,171,907	+		ABIE53_001920	0.85	-0.6
2,171,926	-		ABIE53_001920	0.89	-1.3
2,171,940	-				+0.1
2,171,957	+				-0.0
2,171,958	-				-1.0
2,171,966	-				-0.8
2,171,966	-				-2.3
2,172,082	-				+0.4
2,172,082	-				-1.2
2,172,109	+				+0.7
2,172,187	+				-1.3
2,172,188	-				+1.3
2,172,188	-				-0.0
2,172,267	+		ABIE53_001921	0.12	+0.0
2,172,267	+		ABIE53_001921	0.12	-0.6
2,172,267	+		ABIE53_001921	0.12	+0.4
2,172,319	+		ABIE53_001921	0.15	-3.4
2,172,320	-		ABIE53_001921	0.16	-3.5